Gene Symbol | Tmem55b |
Entrez Gene ID | 364298 |
Full Name | phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1 |
Synonyms | RGD1307475,Tmem55b |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
ORF » Species Summary » Rattus norvegicus » Tmem55b cDNA ORF clone
Gene Symbol | Tmem55b |
Entrez Gene ID | 364298 |
Full Name | phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1 |
Synonyms | RGD1307475,Tmem55b |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_006251889.3 | XP_006251951.1 | type 1 phosphatidylinositol 4,5-bisphosphate 4-phosphatase isoform X2 |
XM_017599760.1 | XP_017455249.1 | type 1 phosphatidylinositol 4,5-bisphosphate 4-phosphatase isoform X3 |
NM_001014233.2 | NP_001014255.1 | type 1 phosphatidylinositol 4,5-bisphosphate 4-phosphatase |
XM_006251888.2 | XP_006251950.1 | type 1 phosphatidylinositol 4,5-bisphosphate 4-phosphatase isoform X1 |
Bos taurus (cattle) | TMEM55B | NP_001069827.1 |
Xenopus tropicalis (tropical clawed frog) | tmem55b | NP_001123847.1 |
Drosophila melanogaster (fruit fly) | CG6707 | NP_648372.1 |
Caenorhabditis elegans (roundworm) | Y71H2AM.2 | NP_497624.3 |
Canis lupus familiaris (dog) | TMEM55B | XP_539676.3 |
Mus musculus (house mouse) | Tmem55b | NP_001028443.1 |
Rattus norvegicus (Norway rat) | Tmem55b | NP_001014255.1 |
Danio rerio (zebrafish) | zgc:123304 | NP_001032453.1 |
Danio rerio (zebrafish) | si:ch211-243g6.4 | NP_001153393.1 |
Homo sapiens (human) | TMEM55B | NP_001094284.1 |
Pan troglodytes (chimpanzee) | TMEM55B | XP_520669.3 |
TMEM55B | XP_002805012.1 | |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP006243 | XP_316310.4 |
TFEB regulates lysosomal positioning by modulating TMEM55B expression and JIP4 recruitment to lysosomes.
Willett R, Martina JA, Zewe JP, Wills R, Hammond GRV, Puertollano R
Nature communications8(1)1580(2017 Nov)
Transmembrane protein 55B is a novel regulator of cellular cholesterol metabolism.
Medina MW, Bauzon F, Naidoo D, Theusch E, Stevens K, Schilde J, Schubert C, Mangravite LM, Rudel LL, Temel RE, Runz H, Krauss RM
Arteriosclerosis, thrombosis, and vascular biology34(9)1917-23(2014 Sep)
The identification and characterization of two phosphatidylinositol-4,5-bisphosphate 4-phosphatases.
Ungewickell A, Hugge C, Kisseleva M, Chang SC, Zou J, Feng Y, Galyov EE, Wilson M, Majerus PW
Proceedings of the National Academy of Sciences of the United States of America102(52)18854-9(2005 Dec)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Tmem55b gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Tmem55b cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ORa05466 | |
Clone ID Related Accession (Same CDS sequence) | NM_001014233.2 | |
Accession Version | NM_001014233.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 855bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-10-10 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | type 1 phosphatidylinositol 4,5-bisphosphate 4-phosphatase | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC087604.1. On Aug 30, 2012 this sequence version replaced NM_001014233.1. ##Evidence-Data-START## Transcript exon combination :: BC087604.1, EX492614.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMD00052296, SAMD00052297 [ECO:0000350] ##Evidence-Data-END## |
1 | ATGGCGGCAG ACGGAGAGCG CTCCCCGCTG CTCTCCGAGG CCGGCGATGG CGGCGCTGGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001014255.1 |
CDS | 103..957 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001014233.2 |
1 | ATGGCGGCAG ACGGAGAGCG CTCCCCGCTG CTCTCCGAGG CCGGCGATGG CGGCGCTGGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa36623 | |
Clone ID Related Accession (Same CDS sequence) | XM_006251888.2 | |
Accession Version | XM_006251888.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 834bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | type 1 phosphatidylinositol 4,5-bisphosphate 4-phosphatase isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005114.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_006251888.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCGGCAG ACGGAGAGCG CTCCCCGCTG CTCTCCGAGG CCGGCGATGG CGGCGCTGGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006251950.1 |
CDS | 102..935 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006251888.2 |
1 | ATGGCGGCAG ACGGAGAGCG CTCCCCGCTG CTCTCCGAGG CCGGCGATGG CGGCGCTGGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa36624 | |
Clone ID Related Accession (Same CDS sequence) | XM_006251889.3 | |
Accession Version | XM_006251889.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 717bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | type 1 phosphatidylinositol 4,5-bisphosphate 4-phosphatase isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005114.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_006251889.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCGGCAG ACGGAGAGCG CTCCCCGCTG CTCTCCGAGG CCGGCGATGG CGGCGCTGGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006251951.1 |
CDS | 102..818 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006251889.3 |
1 | ATGGCGGCAG ACGGAGAGCG CTCCCCGCTG CTCTCCGAGG CCGGCGATGG CGGCGCTGGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa58628 | |
Clone ID Related Accession (Same CDS sequence) | XM_017599760.1 | |
Accession Version | XM_017599760.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 696bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | type 1 phosphatidylinositol 4,5-bisphosphate 4-phosphatase isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005114.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCGGCAG ACGGAGAGCG CTCCCCGCTG CTCTCCGAGG CCGGCGATGG CGGCGCTGGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017455249.1 |
CDS | 102..797 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017599760.1 |
1 | ATGGCGGCAG ACGGAGAGCG CTCCCCGCTG CTCTCCGAGG CCGGCGATGG CGGCGCTGGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
TFEB regulates lysosomal positioning by modulating TMEM55B expression and JIP4 recruitment to lysosomes. |
Transmembrane protein 55B is a novel regulator of cellular cholesterol metabolism. |
The identification and characterization of two phosphatidylinositol-4,5-bisphosphate 4-phosphatases. |