Gene Symbol | Pan2 |
Entrez Gene ID | 408200 |
Full Name | PAN2 poly(A) specific ribonuclease subunit |
Synonyms | Usp52 |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
ORF » Species Summary » Rattus norvegicus » Pan2 cDNA ORF clone
gRNAs
Gene Symbol | Pan2 |
Entrez Gene ID | 408200 |
Full Name | PAN2 poly(A) specific ribonuclease subunit |
Synonyms | Usp52 |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_006240785.3 | XP_006240847.1 | PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X3 |
XM_006240787.3 | XP_006240849.1 | PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X5 |
XM_006240784.3 | XP_006240846.1 | PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X2 |
XM_006240786.3 | XP_006240848.1 | PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X4 |
XM_006240788.3 | XP_006240850.1 | PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X6 |
XM_006240789.3 | XP_006240851.1 | PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X7 |
NM_001008862.1 | NP_001008862.1 | PAN2-PAN3 deadenylation complex catalytic subunit Pan2 |
XM_006240783.3 | XP_006240845.1 | PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X1 |
Rattus norvegicus (Norway rat) | Pan2 | NP_001008862.1 |
Kluyveromyces lactis | KLLA0E18877g | XP_454804.1 |
Magnaporthe oryzae (rice blast fungus) | MGG_17449 | XP_003718602.1 |
Neurospora crassa | NCU10733 | XP_001728299.1 |
Pan troglodytes (chimpanzee) | LOC451995 | XP_003952222.1 |
Saccharomyces cerevisiae (baker's yeast) | PAN2 | NP_011421.1 |
PAN2 | XP_001114990.2 | |
Canis lupus familiaris (dog) | PAN2 | XP_531635.3 |
Danio rerio (zebrafish) | LOC792831 | XP_001920000.4 |
Homo sapiens (human) | PAN2 | NP_001159751.1 |
Bos taurus (cattle) | PAN2 | NP_001073078.2 |
Gallus gallus (chicken) | PAN2 | NP_001012972.1 |
Drosophila melanogaster (fruit fly) | CG8232 | NP_610427.2 |
Schizosaccharomyces pombe (fission yeast) | ubp13 | NP_593053.2 |
Xenopus tropicalis (tropical clawed frog) | pan2 | XP_002934576.2 |
Mus musculus (house mouse) | Pan2 | NP_598753.1 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP010626 | XP_310122.4 |
Eremothecium gossypii | AGOS_AFL055W | NP_985493.2 |
RNA decay machines: deadenylation by the Ccr4-not and Pan2-Pan3 complexes.
Wahle E, Winkler GS
Biochimica et biophysica acta1829(6-7)561-70(2013 Jun-Jul)
Deadenylation is prerequisite for P-body formation and mRNA decay in mammalian cells.
Zheng D, Ezzeddine N, Chen CY, Zhu W, He X, Shyu AB
The Journal of cell biology182(1)89-101(2008 Jul)
A genomic analysis of rat proteases and protease inhibitors.
Puente XS, L?pez-Ot?n C
Genome research14(4)609-22(2004 Apr)
Identification of a human cytoplasmic poly(A) nuclease complex stimulated by poly(A)-binding protein.
Uchida N, Hoshino S, Katada T
The Journal of biological chemistry279(2)1383-91(2004 Jan)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Pan2 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Pan2 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ORa13780 | |
Clone ID Related Accession (Same CDS sequence) | NM_001008862.1 | |
Accession Version | NM_001008862.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3618bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-15 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | PAN2-PAN3 deadenylation complex catalytic subunit Pan2 | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BN000323.1. On Apr 19, 2005 this sequence version replaced XM_579254.1. ##Evidence-Data-START## Transcript exon combination :: BN000323.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMD00052296, SAMD00052297 [ECO:0000350] ##Evidence-Data-END## |
1 | ATGAACTTTG AGGGTCTGGA TCCTGGACTG GCCGAATTCT CCCCAGCTAT GCATTCTACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001008862.1 |
CDS | 1..3618 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAACTTTG AGGGTCTGGA TCCTGGACTG GCCGAATTCT CCCCAGCTAT GCATTCTACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa29755 | |
Clone ID Related Accession (Same CDS sequence) | XM_006240783.3 | |
Accession Version | XM_006240783.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3624bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005106.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_006240783.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAACTTTG AGGGTCTGGA TCCTGGACTG GCCGAATTCT CCCCAGCTAT GCATTCTACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006240845.1 |
CDS | 1179..4802 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAACTTTG AGGGTCTGGA TCCTGGACTG GCCGAATTCT CCCCAGCTAT GCATTCTACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa29756 | |
Clone ID Related Accession (Same CDS sequence) | XM_006240784.3 | |
Accession Version | XM_006240784.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3621bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005106.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_006240784.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAACTTTG AGGGTCTGGA TCCTGGACTG GCCGAATTCT CCCCAGCTAT GCATTCTACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006240846.1 |
CDS | 1179..4799 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAACTTTG AGGGTCTGGA TCCTGGACTG GCCGAATTCT CCCCAGCTAT GCATTCTACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa29757 | |
Clone ID Related Accession (Same CDS sequence) | XM_006240785.3 | |
Accession Version | XM_006240785.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3618bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005106.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_006240785.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAACTTTG AGGGTCTGGA TCCTGGACTG GCCGAATTCT CCCCAGCTAT GCATTCTACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006240847.1 |
CDS | 1179..4796 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAACTTTG AGGGTCTGGA TCCTGGACTG GCCGAATTCT CCCCAGCTAT GCATTCTACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa29758 | |
Clone ID Related Accession (Same CDS sequence) | XM_006240786.3 | |
Accession Version | XM_006240786.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3612bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X4 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005106.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_006240786.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAACTTTG AGGGTCTGGA TCCTGGACTG GCCGAATTCT CCCCAGCTAT GCATTCTACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006240848.1 |
CDS | 1179..4790 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAACTTTG AGGGTCTGGA TCCTGGACTG GCCGAATTCT CCCCAGCTAT GCATTCTACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa29759 | |
Clone ID Related Accession (Same CDS sequence) | XM_006240787.3 | |
Accession Version | XM_006240787.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3609bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X5 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005106.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_006240787.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAACTTTG AGGGTCTGGA TCCTGGACTG GCCGAATTCT CCCCAGCTAT GCATTCTACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006240849.1 |
CDS | 1179..4787 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAACTTTG AGGGTCTGGA TCCTGGACTG GCCGAATTCT CCCCAGCTAT GCATTCTACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa29760 | |
Clone ID Related Accession (Same CDS sequence) | XM_006240788.3 | |
Accession Version | XM_006240788.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3597bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X6 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005106.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_006240788.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAACTTTG AGGGTCTGGA TCCTGGACTG GCCGAATTCT CCCCAGCTAT GCATTCTACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006240850.1 |
CDS | 1179..4775 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAACTTTG AGGGTCTGGA TCCTGGACTG GCCGAATTCT CCCCAGCTAT GCATTCTACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa29761 | |
Clone ID Related Accession (Same CDS sequence) | XM_006240789.3 | |
Accession Version | XM_006240789.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3582bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X7 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005106.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_006240789.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAACTTTG AGGGTCTGGA TCCTGGACTG GCCGAATTCT CCCCAGCTAT GCATTCTACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006240851.1 |
CDS | 1179..4760 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAACTTTG AGGGTCTGGA TCCTGGACTG GCCGAATTCT CCCCAGCTAT GCATTCTACC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RNA decay machines: deadenylation by the Ccr4-not and Pan2-Pan3 complexes. |
Deadenylation is prerequisite for P-body formation and mRNA decay in mammalian cells. |
A genomic analysis of rat proteases and protease inhibitors. |
Identification of a human cytoplasmic poly(A) nuclease complex stimulated by poly(A)-binding protein. |