Gene Symbol
Slit1
Entrez Gene ID
65047
Full Name
slit guidance ligand 1
Synonyms
MEGF4
General protein information
Preferred Namesslit guidance ligand 1
Namesslit homolog 1 protein multiple EGF-like domains protein 4 multiple epidermal growth factor-like domains 4 multiple epidermal growth factor-like domains protein 4 slit-1
Gene Type
protein-coding
Organism
Rattus norvegicus(Norway rat)
Genome
Chromosome: 1
Map Location: 1q54
Summary
homolog of Drosophila slit; may play a role in protein-protein interactions during midline formation in the central nervous system; specifically expressed in fetal and adult forebrain neurons [RGD, Feb 2006].
mRNA and Protein(s)
mRNA
Protein
Name
XM_017589694.1
XP_017445183.1
slit homolog 1 protein isoform X1
NM_022953.2
NP_075242.1
slit homolog 1 protein precursor
Pan troglodytes (chimpanzee)
SLIT1
XP_003312806.1
Homo sapiens (human)
SLIT1
NP_003052.2
Bos taurus (cattle)
SLIT1
XP_002698459.1
Xenopus tropicalis (tropical clawed frog)
slit1
NP_001090702.1
SLIT1
XP_001094231.2
Canis lupus familiaris (dog)
SLIT1
XP_005637640.1
Mus musculus (house mouse)
Slit1
NP_056563.2
Rattus norvegicus (Norway rat)
Slit1
NP_075242.1
Gallus gallus (chicken)
SLIT1
NP_001264265.1
Danio rerio (zebrafish)
slit1a
NP_001030140.1
Related articles in PubMed
Slit1 promotes regenerative neurite outgrowth of adult dorsal root ganglion neurons in vitro via binding to the Robo receptor.
Zhang HY, Zheng LF, Yi XN, Chen ZB, He ZP, Zhao D, Zhang XF, Ma ZJ Journal of chemical neuroanatomy39(4)256-61(2010 Jul)
mRNA expression changes of slit proteins following peripheral nerve injury in the rat model.
Fujiwara T, Kubo T, Koyama Y, Tomita K, Yano K, Tohyama M, Hosokawa K Journal of chemical neuroanatomy36(3-4)170-6(2008 Dec)
Axonal growth regulation of fetal and embryonic stem cell-derived dopaminergic neurons by Netrin-1 and Slits.
Lin L, Isacson O Stem cells (Dayton, Ohio)24(11)2504-13(2006 Nov)
Slit proteins regulate distinct aspects of retinal ganglion cell axon guidance within dorsal and ventral retina.
Thompson H, Camand O, Barker D, Erskine L The Journal of neuroscience : the official journal of the Society for Neuroscience26(31)8082-91(2006 Aug)
Slits contribute to the guidance of retinal ganglion cell axons in the mammalian optic tract.
Thompson H, Barker D, Camand O, Erskine L Developmental biology296(2)476-84(2006 Aug)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Slit1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Slit1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+ /C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID
ORa56831
Clone ID Related Accession (Same CDS sequence)
XM_017589694.1
Accession Version
XM_017589694.1 Latest version!
Documents for ORF clone product in default vector
Sequence Information
ORF Nucleotide Sequence (Length: 3984bp)
Protein sequence
SNP
Vector
pcDNA3.1-C-(k)DYK or customized vector
User Manual
Clone information
Clone Map
MSDS
Tag on pcDNA3.1+ /C-(K)DYK
C terminal DYKDDDDK tags
ORF Insert Method
CloneEZ™ Seamless cloning technology
Insert Structure
linear
Update Date
2016-07-25
Organism
Rattus norvegicus(Norway rat)
Product
slit homolog 1 protein isoform X1
Comment
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005100.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Rattus norvegicus Annotation Release 106
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 7.1
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 2101 2161 2221 2281 2341 2401 2461 2521 2581 2641 2701 2761 2821 2881 2941 3001 3061 3121 3181 3241 3301 3361 3421 3481 3541 3601 3661 3721 3781 3841 3901 3961 ATGCCCAAGC TTCGGACCTT CCGGCTGCAC TCCAACCACC TGTTCTGTGA CTGTCACCTG GCCTGGCTCT CGCAGTGGCT GAGACAGAGG CCCACCATCG GGCTCTTCAC CCAGTGCTCT GGGCCCGCCA GCCTTCGGGG CCTCAATGTG GCAGAGGTGC AAAAGAGTGA GTTCAGCTGC TCAGGCCAGG GGGAGGCTGC ACAAGTACCT GCCTGCACCC TCTCATCCGG TTCCTGCCCA GCCATGTGCA GCTGTAGCAA TGGCATCGTG GACTGCCGTG GCAAAGGCCT CACTGCCATC CCTGCTAACC TTCCGGAGAC GATGACCGAG ATCCGCCTGG AGCTGAACGG TATCAAATCC ATCCCACCAG GAGCCTTCTC TCCCTACAGA AAGCTGCGCA GGATAGACCT GAGTAACAAC CAGATTGCTG AGATTGCACC CGATGCCTTC CAAGGCCTCC GCTCCTTGAA TTCCCTGGTC CTCTATGGCA ACAAGATCAC AGACTTGCCC CGAGGTGTAT TTGGAGGCCT GTACACCCTC CAGCTGCTGC TTCTGAATGC CAACAAGATC AACTGCATCC GGCCTGATGC CTTCCAGGAC CTGCAGAACC TCTCTCTGCT CTCCCTATAT GACAACAAGA TCCAGAGTCT CGCCAAGGGC ACCTTCACCT CCCTGCGGGC CATCCAGACA CTGCATCTGG CCCAGAACCC TTTCATCTGT GACTGTAACC TCAAGTGGCT AGCAGACTTC TTACGTACCA ACCCCATTGA GACAACTGGG GCCCGCTGTG CCAGCCCCCG GCGCCTTGCC AACAAGCGTA TCGGGCAGAT CAAAAGCAAG AAGTTCCGGT GCTCAGCCAA AGAGCAGTAC TTCATTCCAG GGACGGAGGA TTACCACCTG AACAGCGAGT GTACGAGTGA CGTGGCCTGT CCCCACAAGT GCCGCTGTGA GGCCAGTGTG GTGGAGTGCT CTGGCCTGAA GCTCTCTAAG ATCCCTGAGC GAATCCCCCA GTCCACGACT GAGCTACGAC TGAACAACAA TGAGATTTCA ATCCTAGAGG CCACTGGGTT GTTTAAGAAG CTCTCACATC TGAAGAAAAT AAACCTGAGC AACAACAAGG TGTCAGAGAT TGAAGACGGG ACGTTTGAAG GCGCCACCTC CGTCAGCGAG CTGCACCTGA CCGCCAACCA GCTGGAGTCT GTCAGAAGCG GCATGTTCCG GGGTCTAGAT GGCTTGCGGA CCCTGATGCT GAGGAACAAC CGTATCAGCT GCATCCACAA TGACAGCTTC ACTGGGCTGC GTAACGTGCG GCTCCTGTCT CTTTACGACA ACCACATCAC CACCATCTCC CCTGGAGCCT TCGACACCCT CCAGGCCCTG TCCACACTAA ACCTCCTGGC CAACCCATTC AACTGCAACT GCCAGTTGGC CTGGCTGGGG GACTGGCTTC GGAAGAGGAA AATTGTGACA GGGAACCCTC GCTGTCAGAA CCCAGACTTC CTGCGGCAGA TTCCTCTGCA AGATGTGGCC TTCCCTGACT TCAGGTGTGA GGAAGGCCAG GAGGAGGTGG GCTGCCTGCC CCGCCCACAG TGCCCCCAAG AGTGCGCCTG CCTGGACACC GTGGTCCGGT GTAGCAACAA GCACCTCCAG GCTCTGCCCA AGGGCATCCC CAAGAATGTC ACAGAACTCT ACTTAGATGG GAACCAGTTC ACACTGGTTC CGGGACAGCT GTCTACCTTC AAGTATCTGC AGCTTGTCGA CCTGAGCAAC AACAAGATCA GCTCCTTAAG CAACTCTTCC TTCACCAACA TGAGTCAGCT GACCACACTG ATCCTCAGCT ACAACGCCCT CCAGTGCATC CCCCCTCTGG CCTTCCAAGG ACTTCGTTCA CTGCGCTTGC TGTCTTTGCA TGGCAATGAT GTCTCCACCC TCCAAGAGGG AATCTTTGCA GACGTGACGT CTCTGTCTCA CCTGGCCATT GGTGCCAACC CCCTGTACGA CTGCCACCTC CGATGGCTCT CCAGCTGGGT GAAGACTGGC TACAAGGAAC CTGGCATTGC CCGCTGTGCT GGACCCCCAG AGATGGAGGG CAAACTGTTG CTCACCACAC CTGCCAAGAA GTTTGAATGC CAAGGTCCCC CCAGCCTGGC GGTTCAGGCC AAGTGTGATC CCTGCTTGTC CAGCCCATGC CAGAATCAGG GCACTTGTCA CAATGACCCT CTTGAGGTAT ACAGGTGTAC CTGCCCCAGT GGCTACAAGG GCCGAAACTG TGAGGTGTCT CTGGACAGCT GTTCCAGCAA CCCATGTGGA AATGGGGGAA CCTGCCATGC CCAGGAGGGC GAGGATGCTG GCTTCACGTG CTCCTGTCCT TCCGGCTTTG AAGGGCTGAC GTGTGGAATG AACACAGATG ATTGTGTGAA GCACGACTGT GTCAATGGGG GTGTCTGTGT GGATGGCATA GGGAATTACA CATGTCAGTG CCCCCTGCAG TACACAGGAA GGGCCTGTGA ACAGCTAGTG GACTTCTGCT CTCCGGATCT GAACCCATGT CAGCATGAGG CCCAATGTGT TGGCACCCCA GAGGGGCCCA GGTGTGAGTG TGTGCCAGGC TACACGGGTG ACAATTGCAG CAAAAACCAG GACGACTGCA AGGACCACCA GTGTCAGAAC GGGGCTCAGT GTGTGGATGA GATCAACAGC TACGCCTGTC TCTGTGCTGA GGGCTACAGC GGACAGCTCT GTGAGATCCC ACCTGCCCCC AGGAACTCCT GTGAAGGGAC TGAGTGCCAG AATGGAGCCA ACTGTGTAGA CCAGGGCAGC CGGCCCGTAT GCCAGTGCCT ACCAGGCTTT GGAGGTCCCG AATGTGAGAA GTTGCTCAGT GTCAACTTTG TGGACCGGGA CACTTACCTG CAGTTCACTG ACCTGCAGAA CTGGCCTCGG GCCAACATCA CTCTTCAGGT CTCCACAGCA GAGGACAATG GGATCCTCCT CTACAATGGG GATAATGACC ACATTGCAGT TGAGCTGTAC CAGGGCCATG TCCGTGTTAG CTACGACCCA GGCAGCTACC CCAGCTCTGC TATCTACAGT GCTGAAACAA TCAACGATGG GCAGTTCCAC ACAGTTGAGC TGGTGACCTT TGACCAGATG GTGAACCTCT CCATTGATGG TGGCAGCCCC ATGACCATGG ACAACTTTGG AAAGCACTAC ACACTCAACA GTGAGGCCCC CCTCTATGTG GGAGGGATGC CCGTGGATGT GAACTCAGCT GCCTTCCGCC TGTGGCAGAT CCTCAATGGC ACCAGCTTCC ACGGTTGCAT CCGGAATCTA TACATCAACA ACGAACTGCA GGACTTCACC AAGACACAGA TGAAGCCGGG CGTGGTGCCC GGCTGCGAGC CCTGCCGAAA ACTCTACTGT CTACATGGCA TTTGCCAGCC CAACGCCACC CCAGGGCCCG TGTGCCACTG CGAGGCTGGC TGGGGGGGCC TGCACTGTGA CCAGCCAGTG GACGGCCCCT GCCATGGCCA CAAGTGTGTC CATGGGAAAT GCGTGCCCCT CGATGCACTT GCCTACAGCT GCCAATGCCA GGATGGATAC TCGGGGGCTC TGTGCAACCA GGTCGGGGCT GTGGCAGAGC CCTGTGGGGG CTTACAGTGC CTGCATGGTC ACTGCCAGGC CTCGGCCACC AGAGGGGCAC ACTGTGTGTG CAGCCCAGGT TTTTCAGGCG AGCTGTGTGA GCAAGAGTCC GAGTGCCGGG GGGACCCTGT CCGGGACTTT CACCGGGTCC AGAGGGGCTA TGCCATCTGC CAGACCACGC GCCCACTGTC ATGGGTGGAA TGCCGGGGCG CGTGCCCGGG CCAGGGCTGC TGCCAGGGCC TGCGGCTGAA GCGGAGGAAG CTCACCTTCG AGTGCAGCGA TGGGACCTCG TTTGCTGAGG AGGTGGAGAA GCCCACCAAG TGCGGCTGTG CCCCGTGTGC GTAA
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
RefSeq
XP_017445183.1
CDS 564..4547
Translation
Target ORF information:
RefSeq Version XM_017589694.1
Organism Rattus norvegicus(Norway rat)
Definition Rattus norvegicus slit guidance ligand 1 (Slit1), transcript variant X1, mRNA.
Target ORF information:
Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+ /C-(K)DYK
XM_017589694.1
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 2101 2161 2221 2281 2341 2401 2461 2521 2581 2641 2701 2761 2821 2881 2941 3001 3061 3121 3181 3241 3301 3361 3421 3481 3541 3601 3661 3721 3781 3841 3901 3961 ATGCCCAAGC TTCGGACCTT CCGGCTGCAC TCCAACCACC TGTTCTGTGA CTGTCACCTG GCCTGGCTCT CGCAGTGGCT GAGACAGAGG CCCACCATCG GGCTCTTCAC CCAGTGCTCT GGGCCCGCCA GCCTTCGGGG CCTCAATGTG GCAGAGGTGC AAAAGAGTGA GTTCAGCTGC TCAGGCCAGG GGGAGGCTGC ACAAGTACCT GCCTGCACCC TCTCATCCGG TTCCTGCCCA GCCATGTGCA GCTGTAGCAA TGGCATCGTG GACTGCCGTG GCAAAGGCCT CACTGCCATC CCTGCTAACC TTCCGGAGAC GATGACCGAG ATCCGCCTGG AGCTGAACGG TATCAAATCC ATCCCACCAG GAGCCTTCTC TCCCTACAGA AAGCTGCGCA GGATAGACCT GAGTAACAAC CAGATTGCTG AGATTGCACC CGATGCCTTC CAAGGCCTCC GCTCCTTGAA TTCCCTGGTC CTCTATGGCA ACAAGATCAC AGACTTGCCC CGAGGTGTAT TTGGAGGCCT GTACACCCTC CAGCTGCTGC TTCTGAATGC CAACAAGATC AACTGCATCC GGCCTGATGC CTTCCAGGAC CTGCAGAACC TCTCTCTGCT CTCCCTATAT GACAACAAGA TCCAGAGTCT CGCCAAGGGC ACCTTCACCT CCCTGCGGGC CATCCAGACA CTGCATCTGG CCCAGAACCC TTTCATCTGT GACTGTAACC TCAAGTGGCT AGCAGACTTC TTACGTACCA ACCCCATTGA GACAACTGGG GCCCGCTGTG CCAGCCCCCG GCGCCTTGCC AACAAGCGTA TCGGGCAGAT CAAAAGCAAG AAGTTCCGGT GCTCAGCCAA AGAGCAGTAC TTCATTCCAG GGACGGAGGA TTACCACCTG AACAGCGAGT GTACGAGTGA CGTGGCCTGT CCCCACAAGT GCCGCTGTGA GGCCAGTGTG GTGGAGTGCT CTGGCCTGAA GCTCTCTAAG ATCCCTGAGC GAATCCCCCA GTCCACGACT GAGCTACGAC TGAACAACAA TGAGATTTCA ATCCTAGAGG CCACTGGGTT GTTTAAGAAG CTCTCACATC TGAAGAAAAT AAACCTGAGC AACAACAAGG TGTCAGAGAT TGAAGACGGG ACGTTTGAAG GCGCCACCTC CGTCAGCGAG CTGCACCTGA CCGCCAACCA GCTGGAGTCT GTCAGAAGCG GCATGTTCCG GGGTCTAGAT GGCTTGCGGA CCCTGATGCT GAGGAACAAC CGTATCAGCT GCATCCACAA TGACAGCTTC ACTGGGCTGC GTAACGTGCG GCTCCTGTCT CTTTACGACA ACCACATCAC CACCATCTCC CCTGGAGCCT TCGACACCCT CCAGGCCCTG TCCACACTAA ACCTCCTGGC CAACCCATTC AACTGCAACT GCCAGTTGGC CTGGCTGGGG GACTGGCTTC GGAAGAGGAA AATTGTGACA GGGAACCCTC GCTGTCAGAA CCCAGACTTC CTGCGGCAGA TTCCTCTGCA AGATGTGGCC TTCCCTGACT TCAGGTGTGA GGAAGGCCAG GAGGAGGTGG GCTGCCTGCC CCGCCCACAG TGCCCCCAAG AGTGCGCCTG CCTGGACACC GTGGTCCGGT GTAGCAACAA GCACCTCCAG GCTCTGCCCA AGGGCATCCC CAAGAATGTC ACAGAACTCT ACTTAGATGG GAACCAGTTC ACACTGGTTC CGGGACAGCT GTCTACCTTC AAGTATCTGC AGCTTGTCGA CCTGAGCAAC AACAAGATCA GCTCCTTAAG CAACTCTTCC TTCACCAACA TGAGTCAGCT GACCACACTG ATCCTCAGCT ACAACGCCCT CCAGTGCATC CCCCCTCTGG CCTTCCAAGG ACTTCGTTCA CTGCGCTTGC TGTCTTTGCA TGGCAATGAT GTCTCCACCC TCCAAGAGGG AATCTTTGCA GACGTGACGT CTCTGTCTCA CCTGGCCATT GGTGCCAACC CCCTGTACGA CTGCCACCTC CGATGGCTCT CCAGCTGGGT GAAGACTGGC TACAAGGAAC CTGGCATTGC CCGCTGTGCT GGACCCCCAG AGATGGAGGG CAAACTGTTG CTCACCACAC CTGCCAAGAA GTTTGAATGC CAAGGTCCCC CCAGCCTGGC GGTTCAGGCC AAGTGTGATC CCTGCTTGTC CAGCCCATGC CAGAATCAGG GCACTTGTCA CAATGACCCT CTTGAGGTAT ACAGGTGTAC CTGCCCCAGT GGCTACAAGG GCCGAAACTG TGAGGTGTCT CTGGACAGCT GTTCCAGCAA CCCATGTGGA AATGGGGGAA CCTGCCATGC CCAGGAGGGC GAGGATGCTG GCTTCACGTG CTCCTGTCCT TCCGGCTTTG AAGGGCTGAC GTGTGGAATG AACACAGATG ATTGTGTGAA GCACGACTGT GTCAATGGGG GTGTCTGTGT GGATGGCATA GGGAATTACA CATGTCAGTG CCCCCTGCAG TACACAGGAA GGGCCTGTGA ACAGCTAGTG GACTTCTGCT CTCCGGATCT GAACCCATGT CAGCATGAGG CCCAATGTGT TGGCACCCCA GAGGGGCCCA GGTGTGAGTG TGTGCCAGGC TACACGGGTG ACAATTGCAG CAAAAACCAG GACGACTGCA AGGACCACCA GTGTCAGAAC GGGGCTCAGT GTGTGGATGA GATCAACAGC TACGCCTGTC TCTGTGCTGA GGGCTACAGC GGACAGCTCT GTGAGATCCC ACCTGCCCCC AGGAACTCCT GTGAAGGGAC TGAGTGCCAG AATGGAGCCA ACTGTGTAGA CCAGGGCAGC CGGCCCGTAT GCCAGTGCCT ACCAGGCTTT GGAGGTCCCG AATGTGAGAA GTTGCTCAGT GTCAACTTTG TGGACCGGGA CACTTACCTG CAGTTCACTG ACCTGCAGAA CTGGCCTCGG GCCAACATCA CTCTTCAGGT CTCCACAGCA GAGGACAATG GGATCCTCCT CTACAATGGG GATAATGACC ACATTGCAGT TGAGCTGTAC CAGGGCCATG TCCGTGTTAG CTACGACCCA GGCAGCTACC CCAGCTCTGC TATCTACAGT GCTGAAACAA TCAACGATGG GCAGTTCCAC ACAGTTGAGC TGGTGACCTT TGACCAGATG GTGAACCTCT CCATTGATGG TGGCAGCCCC ATGACCATGG ACAACTTTGG AAAGCACTAC ACACTCAACA GTGAGGCCCC CCTCTATGTG GGAGGGATGC CCGTGGATGT GAACTCAGCT GCCTTCCGCC TGTGGCAGAT CCTCAATGGC ACCAGCTTCC ACGGTTGCAT CCGGAATCTA TACATCAACA ACGAACTGCA GGACTTCACC AAGACACAGA TGAAGCCGGG CGTGGTGCCC GGCTGCGAGC CCTGCCGAAA ACTCTACTGT CTACATGGCA TTTGCCAGCC CAACGCCACC CCAGGGCCCG TGTGCCACTG CGAGGCTGGC TGGGGGGGCC TGCACTGTGA CCAGCCAGTG GACGGCCCCT GCCATGGCCA CAAGTGTGTC CATGGGAAAT GCGTGCCCCT CGATGCACTT GCCTACAGCT GCCAATGCCA GGATGGATAC TCGGGGGCTC TGTGCAACCA GGTCGGGGCT GTGGCAGAGC CCTGTGGGGG CTTACAGTGC CTGCATGGTC ACTGCCAGGC CTCGGCCACC AGAGGGGCAC ACTGTGTGTG CAGCCCAGGT TTTTCAGGCG AGCTGTGTGA GCAAGAGTCC GAGTGCCGGG GGGACCCTGT CCGGGACTTT CACCGGGTCC AGAGGGGCTA TGCCATCTGC CAGACCACGC GCCCACTGTC ATGGGTGGAA TGCCGGGGCG CGTGCCCGGG CCAGGGCTGC TGCCAGGGCC TGCGGCTGAA GCGGAGGAAG CTCACCTTCG AGTGCAGCGA TGGGACCTCG TTTGCTGAGG AGGTGGAGAA GCCCACCAAG TGCGGCTGTG CCCCGTGTGC GTAA
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
CloneID
ORa06527
Clone ID Related Accession (Same CDS sequence)
NM_022953.2
Accession Version
NM_022953.2 Latest version!
Documents for ORF clone product in default vector
Sequence Information
ORF Nucleotide Sequence (Length: 4596bp)
Protein sequence
SNP
Vector
pcDNA3.1-C-(k)DYK or customized vector
User Manual
Clone information
Clone Map
MSDS
Tag on pcDNA3.1+ /C-(K)DYK
C terminal DYKDDDDK tags
ORF Insert Method
CloneEZ™ Seamless cloning technology
Insert Structure
linear
Update Date
2019-09-23
Organism
Rattus norvegicus(Norway rat)
Product
slit homolog 1 protein precursor
Comment
Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AB011530.1, EV772160.1 and BF410201.1. On Oct 17, 2007 this sequence version replaced NM_022953.1.
Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications.
##Evidence-Data-START##
Transcript exon combination :: AB011530.1, AF133730.1 [ECO:0000332]
RNAseq introns :: mixed/partial sample support SAMD00052296, SAMD00052297 [ECO:0000350]
##Evidence-Data-END##
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 2101 2161 2221 2281 2341 2401 2461 2521 2581 2641 2701 2761 2821 2881 2941 3001 3061 3121 3181 3241 3301 3361 3421 3481 3541 3601 3661 3721 3781 3841 3901 3961 4021 4081 4141 4201 4261 4321 4381 4441 4501 4561 ATGGCGCTAA CGCCCCAGCG CGGGTCCTCT TCGGGGTTGA GCCGACCAGA GCTGTGGCTG CTGCTATGGG CAGCCGCGTG GCGCCTGGGG GCCACGGCGT GCCCCGCCCT CTGCACCTGC ACCGGCACTA CAGTGGACTG CCACGGCACG GGTTTGCAGG CCATCCCCAA GAACATCCCA CGGAACACCG AGCGCCTGGA ACTCAATGGT AACAATATCA CTCGGATCCA TAAGAATGAC TTTGCTGGGC TCAAGCAGCT TCGAGTGTTG CAGCTGATGG AGAACCAGAT TGGAGCTGTG GAACGGGGAG CTTTTGATGA CATGAAGGAG TTGGAGCGGC TACGACTGAA CCGCAACCAG CTGCAAGTGT TGCCTGAACT ACTGTTCCAG AACAACCAGG CTCTGTCCAG ACTGGACCTG AGTGAGAATT CTCTCCAGGC TGTGCCCAGA AAGGCTTTCC GAGGAGCCAC AGACCTCAAA AATCTACAGC TGGACAAGAA CCAGATCAGC TGCATCGAGG AAGGGGCCTT CCGTGCCCTA CGGGGACTGG AGGTTCTGAC CCTGAACAAC AACAACATCA CCACCATCCC TGTGTCCAGT TTCAACCATA TGCCCAAGCT TCGGACCTTC CGGCTGCACT CCAACCACCT GTTCTGTGAC TGTCACCTGG CCTGGCTCTC GCAGTGGCTG AGACAGAGGC CCACCATCGG GCTCTTCACC CAGTGCTCTG GGCCCGCCAG CCTTCGGGGC CTCAATGTGG CAGAGGTGCA AAAGAGTGAG TTCAGCTGCT CAGGCCAGGG GGAGGCTGCA CAAGTACCTG CCTGCACCCT CTCATCCGGT TCCTGCCCAG CCATGTGCAG CTGTAGCAAT GGCATCGTGG ACTGCCGTGG CAAAGGCCTC ACTGCCATCC CTGCTAACCT TCCGGAGACG ATGACCGAGA TCCGCCTGGA GCTGAACGGT ATCAAATCCA TCCCACCAGG AGCCTTCTCT CCCTACAGAA AGCTGCGCAG GATAGACCTG AGTAACAACC AGATTGCTGA GATTGCACCC GATGCCTTCC AAGGCCTCCG CTCCTTGAAT TCCCTGGTCC TCTATGGCAA CAAGATCACA GACTTGCCCC GAGGTGTATT TGGAGGCCTG TACACCCTCC AGCTGCTGCT TCTGAATGCC AACAAGATCA ACTGCATCCG GCCTGATGCC TTCCAGGACC TGCAGAACCT CTCTCTGCTC TCCCTATATG ACAACAAGAT CCAGAGTCTC GCCAAGGGCA CCTTCACCTC CCTGCGGGCC ATCCAGACAC TGCATCTGGC CCAGAACCCT TTCATCTGTG ACTGTAACCT CAAGTGGCTG GCAGACTTCT TACGTACCAA CCCCATTGAG ACAACTGGGG CCCGCTGTGC CAGCCCCCGG CGCCTTGCCA ACAAGCGTAT CGGGCAGATC AAAAGCAAGA AGTTCCGGTG CTCAGCCAAA GAGCAGTACT TCATTCCAGG GACGGAGGAT TACCACCTGA ACAGCGAGTG TACGAGTGAC GTGGCCTGTC CCCACAAGTG CCGCTGTGAG GCCAGTGTGG TGGAGTGCTC TGGCCTGAAG CTCTCTAAGA TCCCTGAGCG AATCCCCCAG TCCACGACTG AGCTACGACT GAACAACAAT GAGATTTCAA TCCTAGAGGC CACTGGGTTG TTTAAGAAGC TCTCACATCT GAAGAAAATA AACCTGAGCA ACAACAAGGT GTCAGAGATT GAAGACGGGA CGTTTGAAGG CGCCACCTCC GTCAGCGAGC TGCACCTGAC CGCCAACCAG CTGGAGTCTG TCAGAAGCGG CATGTTCCGG GGTCTAGATG GCTTGCGGAC CCTGATGCTG AGGAACAACC GTATCAGCTG CATCCACAAT GACAGCTTCA CTGGGCTGCG TAACGTGCGG CTCCTGTCTC TTTACGACAA CCACATCACC ACCATCTCCC CTGGAGCCTT CGACACCCTC CAGGCCCTGT CCACACTAAA CCTCCTGGCC AACCCATTCA ACTGCAACTG CCAGTTGGCC TGGCTGGGGG ACTGGCTTCG GAAGAGGAAA ATTGTGACAG GGAACCCTCG CTGTCAGAAC CCAGACTTCC TGCGGCAGAT TCCTCTGCAA GATGTGGCCT TCCCTGACTT CAGGTGTGAG GAAGGCCAGG AGGAGGTGGG CTGCCTGCCC CGCCCACAGT GCCCCCAAGA GTGCGCCTGC CTGGACACCG TGGTCCGGTG TAGCAACAAG CACCTCCAGG CTCTGCCCAA GGGCATCCCC AAGAATGTCA CAGAACTCTA CTTGGATGGG AACCAGTTCA CACTGGTTCC GGGACAGCTG TCTACCTTCA AGTATCTGCA GCTTGTCGAC CTGAGCAACA ACAAGATCAG CTCCTTAAGC AACTCTTCCT TCACCAACAT GAGTCAGCTG ACCACACTGA TCCTCAGCTA CAACGCCCTC CAGTGCATCC CCCCTCTGGC CTTCCAAGGA CTTCGTTCAC TGCGCTTGCT GTCTTTGCAT GGCAATGATG TCTCCACCCT CCAAGAGGGA ATCTTTGCAG ACGTGACGTC TCTGTCTCAC CTGGCCATTG GTGCCAACCC CCTGTACTGC GACTGCCACC TCCGATGGCT CTCCAGCTGG GTGAAGACTG GCTACAAGGA ACCTGGCATT GCCCGCTGTG CTGGACCCCC AGAGATGGAG GGCAAACTGT TGCTCACCAC ACCTGCCAAG AAGTTTGAAT GCCAAGGTCC CCCCAGCCTG GCGGTTCAGG CCAAGTGTGA TCCCTGCTTG TCCAGCCCAT GCCAGAATCA GGGCACTTGT CACAATGACC CTCTTGAGGT ATACAGGTGT ACCTGCCCCA GTGGCTACAA GGGCCGAAAC TGTGAGGTGT CTCTGGACAG CTGTTCCAGC AACCCATGTG GAAATGGGGG AACCTGCCAT GCCCAGGAGG GCGAGGATGC TGGCTTCACG TGCTCCTGTC CTTCCGGCTT TGAAGGGCTG ACGTGTGGAA TGAACACAGA TGATTGTGTG AAGCACGACT GTGTCAATGG GGGTGTCTGT GTGGATGGCA TAGGGAATTA CACATGTCAG TGCCCCCTGC AGTACACAGG AAGGGCCTGT GAACAGCTAG TGGACTTCTG CTCTCCGGAT CTGAACCCAT GTCAGCATGA GGCCCAATGT GTTGGCACCC CAGAGGGGCC CAGGTGTGAG TGTGTGCCAG GCTACACGGG TGACAATTGC AGCAAAAACC AGGACGACTG CAAGGACCAC CAGTGTCAGA ACGGGGCTCA GTGTGTGGAT GAGATCAACA GCTACGCCTG TCTCTGTGCT GAGGGCTACA GCGGACAGCT CTGTGAGATC CCACCTGCCC CCAGGAACTC CTGTGAAGGG ACTGAGTGCC AGAATGGAGC CAACTGTGTA GACCAGGGCA GCCGGCCCGT ATGCCAGTGC CTACCAGGCT TTGGAGGTCC CGAATGTGAG AAGTTGCTCA GTGTCAACTT TGTGGACCGG GACACTTACC TGCAGTTCAC TGACCTGCAG AACTGGCCTC GGGCCAACAT CACTCTTCAG GTCTCCACAG CAGAGGACAA TGGGATCCTC CTCTACAATG GGGATAATGA CCACATTGCA GTTGAGCTGT ACCAGGGCCA TGTCCGTGTT AGCTACGACC CAGGCAGCTA CCCCAGCTCT GCTATCTACA GTGCTGAAAC AATCAACGAT GGGCAGTTCC ACACAGTTGA GCTGGTGACC TTTGACCAGA TGGTGAACCT CTCCATTGAT GGTGGCAGCC CCATGACCAT GGACAACTTT GGAAAGCACT ACACACTCAA CAGTGAGGCC CCCCTCTATG TGGGAGGGAT GCCCGTGGAT GTGAACTCAG CTGCCTTCCG CCTGTGGCAG ATCCTCAATG GCACCAGCTT CCACGGTTGC ATCCGGAATC TATACATCAA CAACGAACTG CAGGACTTCA CCAAGACACA GATGAAGCCG GGCGTGGTGC CCGGCTGCGA GCCCTGCCGA AAACTCTACT GTCTACATGG CATTTGCCAG CCCAACGCCA CCCCAGGGCC CGTGTGCCAC TGCGAGGCTG GCTGGGGGGG CCTGCACTGT GACCAGCCAG TGGACGGCCC CTGCCATGGC CACAAGTGTG TCCATGGGAA ATGCGTGCCC CTCGATGCAC TTGCCTACAG CTGCCAATGC CAGGATGGAT ACTCGGGGGC TCTGTGCAAC CAGGTCGGGG CTGTGGCAGA GCCCTGTGGG GGCTTACAGT GCCTGCATGG TCACTGCCAG GCCTCGGCCA CCAGAGGGGC ACACTGTGTG TGCAGCCCAG GTTTTTCAGG CGAGCTGTGT GAGCAAGAGT CCGAGTGCCG GGGGGACCCT GTCCGGGACT TTCACCGGGT CCAGAGGGGC TATGCCATCT GCCAGACCAC GCGCCCACTG TCATGGGTGG AATGCCGGGG CGCGTGCCCG GGCCAGGGCT GCTGCCAGGG CCTGCGGCTG AAGCGGAGGA AGCTCACCTT CGAGTGCAGC GATGGGACCT CGTTTGCTGA GGAGGTGGAG AAGCCCACCA AGTGCGGCTG TGCCCCGTGT GCGTAA
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
RefSeq
NP_075242.1
CDS 160..4755
Translation
Target ORF information:
RefSeq Version NM_022953.2
Organism Rattus norvegicus(Norway rat)
Definition Rattus norvegicus slit guidance ligand 1 (Slit1), mRNA.
Target ORF information:
Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+ /C-(K)DYK
NM_022953.2
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 2101 2161 2221 2281 2341 2401 2461 2521 2581 2641 2701 2761 2821 2881 2941 3001 3061 3121 3181 3241 3301 3361 3421 3481 3541 3601 3661 3721 3781 3841 3901 3961 4021 4081 4141 4201 4261 4321 4381 4441 4501 4561 ATGGCGCTAA CGCCCCAGCG CGGGTCCTCT TCGGGGTTGA GCCGACCAGA GCTGTGGCTG CTGCTATGGG CAGCCGCGTG GCGCCTGGGG GCCACGGCGT GCCCCGCCCT CTGCACCTGC ACCGGCACTA CAGTGGACTG CCACGGCACG GGTTTGCAGG CCATCCCCAA GAACATCCCA CGGAACACCG AGCGCCTGGA ACTCAATGGT AACAATATCA CTCGGATCCA TAAGAATGAC TTTGCTGGGC TCAAGCAGCT TCGAGTGTTG CAGCTGATGG AGAACCAGAT TGGAGCTGTG GAACGGGGAG CTTTTGATGA CATGAAGGAG TTGGAGCGGC TACGACTGAA CCGCAACCAG CTGCAAGTGT TGCCTGAACT ACTGTTCCAG AACAACCAGG CTCTGTCCAG ACTGGACCTG AGTGAGAATT CTCTCCAGGC TGTGCCCAGA AAGGCTTTCC GAGGAGCCAC AGACCTCAAA AATCTACAGC TGGACAAGAA CCAGATCAGC TGCATCGAGG AAGGGGCCTT CCGTGCCCTA CGGGGACTGG AGGTTCTGAC CCTGAACAAC AACAACATCA CCACCATCCC TGTGTCCAGT TTCAACCATA TGCCCAAGCT TCGGACCTTC CGGCTGCACT CCAACCACCT GTTCTGTGAC TGTCACCTGG CCTGGCTCTC GCAGTGGCTG AGACAGAGGC CCACCATCGG GCTCTTCACC CAGTGCTCTG GGCCCGCCAG CCTTCGGGGC CTCAATGTGG CAGAGGTGCA AAAGAGTGAG TTCAGCTGCT CAGGCCAGGG GGAGGCTGCA CAAGTACCTG CCTGCACCCT CTCATCCGGT TCCTGCCCAG CCATGTGCAG CTGTAGCAAT GGCATCGTGG ACTGCCGTGG CAAAGGCCTC ACTGCCATCC CTGCTAACCT TCCGGAGACG ATGACCGAGA TCCGCCTGGA GCTGAACGGT ATCAAATCCA TCCCACCAGG AGCCTTCTCT CCCTACAGAA AGCTGCGCAG GATAGACCTG AGTAACAACC AGATTGCTGA GATTGCACCC GATGCCTTCC AAGGCCTCCG CTCCTTGAAT TCCCTGGTCC TCTATGGCAA CAAGATCACA GACTTGCCCC GAGGTGTATT TGGAGGCCTG TACACCCTCC AGCTGCTGCT TCTGAATGCC AACAAGATCA ACTGCATCCG GCCTGATGCC TTCCAGGACC TGCAGAACCT CTCTCTGCTC TCCCTATATG ACAACAAGAT CCAGAGTCTC GCCAAGGGCA CCTTCACCTC CCTGCGGGCC ATCCAGACAC TGCATCTGGC CCAGAACCCT TTCATCTGTG ACTGTAACCT CAAGTGGCTG GCAGACTTCT TACGTACCAA CCCCATTGAG ACAACTGGGG CCCGCTGTGC CAGCCCCCGG CGCCTTGCCA ACAAGCGTAT CGGGCAGATC AAAAGCAAGA AGTTCCGGTG CTCAGCCAAA GAGCAGTACT TCATTCCAGG GACGGAGGAT TACCACCTGA ACAGCGAGTG TACGAGTGAC GTGGCCTGTC CCCACAAGTG CCGCTGTGAG GCCAGTGTGG TGGAGTGCTC TGGCCTGAAG CTCTCTAAGA TCCCTGAGCG AATCCCCCAG TCCACGACTG AGCTACGACT GAACAACAAT GAGATTTCAA TCCTAGAGGC CACTGGGTTG TTTAAGAAGC TCTCACATCT GAAGAAAATA AACCTGAGCA ACAACAAGGT GTCAGAGATT GAAGACGGGA CGTTTGAAGG CGCCACCTCC GTCAGCGAGC TGCACCTGAC CGCCAACCAG CTGGAGTCTG TCAGAAGCGG CATGTTCCGG GGTCTAGATG GCTTGCGGAC CCTGATGCTG AGGAACAACC GTATCAGCTG CATCCACAAT GACAGCTTCA CTGGGCTGCG TAACGTGCGG CTCCTGTCTC TTTACGACAA CCACATCACC ACCATCTCCC CTGGAGCCTT CGACACCCTC CAGGCCCTGT CCACACTAAA CCTCCTGGCC AACCCATTCA ACTGCAACTG CCAGTTGGCC TGGCTGGGGG ACTGGCTTCG GAAGAGGAAA ATTGTGACAG GGAACCCTCG CTGTCAGAAC CCAGACTTCC TGCGGCAGAT TCCTCTGCAA GATGTGGCCT TCCCTGACTT CAGGTGTGAG GAAGGCCAGG AGGAGGTGGG CTGCCTGCCC CGCCCACAGT GCCCCCAAGA GTGCGCCTGC CTGGACACCG TGGTCCGGTG TAGCAACAAG CACCTCCAGG CTCTGCCCAA GGGCATCCCC AAGAATGTCA CAGAACTCTA CTTGGATGGG AACCAGTTCA CACTGGTTCC GGGACAGCTG TCTACCTTCA AGTATCTGCA GCTTGTCGAC CTGAGCAACA ACAAGATCAG CTCCTTAAGC AACTCTTCCT TCACCAACAT GAGTCAGCTG ACCACACTGA TCCTCAGCTA CAACGCCCTC CAGTGCATCC CCCCTCTGGC CTTCCAAGGA CTTCGTTCAC TGCGCTTGCT GTCTTTGCAT GGCAATGATG TCTCCACCCT CCAAGAGGGA ATCTTTGCAG ACGTGACGTC TCTGTCTCAC CTGGCCATTG GTGCCAACCC CCTGTACTGC GACTGCCACC TCCGATGGCT CTCCAGCTGG GTGAAGACTG GCTACAAGGA ACCTGGCATT GCCCGCTGTG CTGGACCCCC AGAGATGGAG GGCAAACTGT TGCTCACCAC ACCTGCCAAG AAGTTTGAAT GCCAAGGTCC CCCCAGCCTG GCGGTTCAGG CCAAGTGTGA TCCCTGCTTG TCCAGCCCAT GCCAGAATCA GGGCACTTGT CACAATGACC CTCTTGAGGT ATACAGGTGT ACCTGCCCCA GTGGCTACAA GGGCCGAAAC TGTGAGGTGT CTCTGGACAG CTGTTCCAGC AACCCATGTG GAAATGGGGG AACCTGCCAT GCCCAGGAGG GCGAGGATGC TGGCTTCACG TGCTCCTGTC CTTCCGGCTT TGAAGGGCTG ACGTGTGGAA TGAACACAGA TGATTGTGTG AAGCACGACT GTGTCAATGG GGGTGTCTGT GTGGATGGCA TAGGGAATTA CACATGTCAG TGCCCCCTGC AGTACACAGG AAGGGCCTGT GAACAGCTAG TGGACTTCTG CTCTCCGGAT CTGAACCCAT GTCAGCATGA GGCCCAATGT GTTGGCACCC CAGAGGGGCC CAGGTGTGAG TGTGTGCCAG GCTACACGGG TGACAATTGC AGCAAAAACC AGGACGACTG CAAGGACCAC CAGTGTCAGA ACGGGGCTCA GTGTGTGGAT GAGATCAACA GCTACGCCTG TCTCTGTGCT GAGGGCTACA GCGGACAGCT CTGTGAGATC CCACCTGCCC CCAGGAACTC CTGTGAAGGG ACTGAGTGCC AGAATGGAGC CAACTGTGTA GACCAGGGCA GCCGGCCCGT ATGCCAGTGC CTACCAGGCT TTGGAGGTCC CGAATGTGAG AAGTTGCTCA GTGTCAACTT TGTGGACCGG GACACTTACC TGCAGTTCAC TGACCTGCAG AACTGGCCTC GGGCCAACAT CACTCTTCAG GTCTCCACAG CAGAGGACAA TGGGATCCTC CTCTACAATG GGGATAATGA CCACATTGCA GTTGAGCTGT ACCAGGGCCA TGTCCGTGTT AGCTACGACC CAGGCAGCTA CCCCAGCTCT GCTATCTACA GTGCTGAAAC AATCAACGAT GGGCAGTTCC ACACAGTTGA GCTGGTGACC TTTGACCAGA TGGTGAACCT CTCCATTGAT GGTGGCAGCC CCATGACCAT GGACAACTTT GGAAAGCACT ACACACTCAA CAGTGAGGCC CCCCTCTATG TGGGAGGGAT GCCCGTGGAT GTGAACTCAG CTGCCTTCCG CCTGTGGCAG ATCCTCAATG GCACCAGCTT CCACGGTTGC ATCCGGAATC TATACATCAA CAACGAACTG CAGGACTTCA CCAAGACACA GATGAAGCCG GGCGTGGTGC CCGGCTGCGA GCCCTGCCGA AAACTCTACT GTCTACATGG CATTTGCCAG CCCAACGCCA CCCCAGGGCC CGTGTGCCAC TGCGAGGCTG GCTGGGGGGG CCTGCACTGT GACCAGCCAG TGGACGGCCC CTGCCATGGC CACAAGTGTG TCCATGGGAA ATGCGTGCCC CTCGATGCAC TTGCCTACAG CTGCCAATGC CAGGATGGAT ACTCGGGGGC TCTGTGCAAC CAGGTCGGGG CTGTGGCAGA GCCCTGTGGG GGCTTACAGT GCCTGCATGG TCACTGCCAG GCCTCGGCCA CCAGAGGGGC ACACTGTGTG TGCAGCCCAG GTTTTTCAGG CGAGCTGTGT GAGCAAGAGT CCGAGTGCCG GGGGGACCCT GTCCGGGACT TTCACCGGGT CCAGAGGGGC TATGCCATCT GCCAGACCAC GCGCCCACTG TCATGGGTGG AATGCCGGGG CGCGTGCCCG GGCCAGGGCT GCTGCCAGGG CCTGCGGCTG AAGCGGAGGA AGCTCACCTT CGAGTGCAGC GATGGGACCT CGTTTGCTGA GGAGGTGGAG AAGCCCACCA AGTGCGGCTG TGCCCCGTGT GCGTAA
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.