Gene Symbol |
shox2 |
Entrez Gene ID |
100101703 |
Full Name |
short stature homeobox 2 |
Synonyms |
og12,og12x,ogi2x,shot |
General protein information |
- Preferred Names
short stature homeobox 2
Names
short stature homeobox protein 2
|
Gene Type |
protein-coding |
Organism |
Xenopus tropicalis(tropical clawed frog) |
mRNA and Protein(s)
mRNA |
Protein |
Name |
XM_012962582.2 |
XP_012818036.1 |
short stature homeobox protein 2 isoform X1 |
XM_012962582.3 |
XP_012818036.1 |
short stature homeobox protein 2 isoform X1 |
NM_001100224.1 |
NP_001093694.1 |
short stature homeobox protein 2 |
Homo sapiens (human) |
SHOX2 |
NP_003021.3 |
Canis lupus familiaris (dog) |
SHOX2 |
XP_542854.4 |
Bos taurus (cattle) |
SHOX2 |
NP_001192456.1 |
Gallus gallus (chicken) |
SHOX2 |
XP_003641845.2 |
Danio rerio (zebrafish) |
shox2 |
NP_957490.1 |
|
SHOX2 |
XP_001102324.1 |
Mus musculus (house mouse) |
Shox2 |
NP_038693.1 |
Rattus norvegicus (Norway rat) |
Shox2 |
NP_037160.1 |
Pan troglodytes (chimpanzee) |
SHOX2 |
XP_001153180.1 |
Xenopus tropicalis (tropical clawed frog) |
shox2 |
NP_001093694.1 |
Related articles in PubMed
Shox2 mediates Tbx5 activity by regulating Bmp4 in the pacemaker region of the developing heart.
Puskaric S, Schmitteckert S, Mori AD, Glaser A, Schneider KU, Bruneau BG, Blaschke RJ, Steinbeisser H, Rappold G
Human molecular genetics19(23)4625-33(2010 Dec)
Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative.
Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW, Richardson P
Developmental dynamics : an official publication of the American Association of Anatomists225(4)384-91(2002 Dec)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following shox2 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the shox2 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID |
OXa30226 |
Clone ID Related Accession (Same CDS sequence) |
XM_012962582.2
, XM_012962582.3
|
Accession Version |
XM_012962582.2 |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 900bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2016-09-07 |
Organism |
Xenopus tropicalis(tropical clawed frog) |
Product |
short stature homeobox protein 2 isoform X1 |
Comment |
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030681.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process
On Sep 8, 2016 this sequence version replaced XM_012962582.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Xenopus tropicalis Annotation Release 103
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 7.1
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
|
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841
| ATGGAAGAAC TTACTGCTTT TGTGTCCAAG TCATTTGATC AGAAGATCAA GGAGAAGAAG GAGATGATCA CTTACCGGGA GGTGTTGGAA AGCGGCCCAG CTCGGGGCAA GGAGCCTGGC TGCGGAGAAG GGGCCCGGGA GGACGGACTA GCGGGGAACC GGTGTATAGG AGGGGGTGGC GGCGGTGGAG GAGGTGGTGG AGGGGCCAGA TCCCCGGTCT TGGAGCTCGA TCTGTCCGTG GAGAGGATCA GGGAGAGTGG AAGCCCGAAG CTCACTGAGG TATCCCCAGA GATAAAGGAA CGGAAGGAGG AGCTGAAGCA GCAGGCACTG GAGGAAGAGG GACAGACTAA GATCAAGCAG AGAAGGAGTC GGACTAACTT CACCCTGGAG CAGCTGAATG AGCTGGAGAG ATTGTTTGAT GAGACCCACT ACCCAGATGC CTTCATGAGG GAGGAGTTGA GCCAGCGCCT TGGCCTGTCA GAGGCCAGAG TTCAGGTCTG GTTTCAAAAC AGAAGGGCAA AATGCAGAAA ACAAGAAAAT CAGCTCCATA AAGGGGTCCT GATAGGAGCA GGGAGCCAGT TTGAAGCGTG TAGAGTCGCA CCTTATGTCA ATGTGGGAGC CCTGAGGATG CCATTCCAGC AGGTTCAGGC ACAGTTGCAG CTGGACAGCG CCGTGGCCCA CGCCCACCAC CACCTCCATC CTCACCTGAC GGCGCATGCG CCCTACATGA TGTTCCCGGC CCCGCCCTTC GGACTCCCGC TGGCGACACT GGCTGCGGAG ACGGCGACGG CAGCGTCTGT AGTTGCGGCA GCTGCGGCTG CTAAAACCTC TAGCAAGAAC TCGAGCATTG CAGATCTTAG ACTTAAAGCC AAAAAACACG CAGCAGCTCT AGGACTGTGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
XP_012818036.1 |
CDS | 396..1295 |
Translation | |
Target ORF information:
RefSeq Version | XM_012962582.2 |
Organism | Xenopus tropicalis(tropical clawed frog) |
Definition | Xenopus tropicalis short stature homeobox 2 (shox2), transcript variant X1, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
XM_012962582.2 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841
| ATGGAAGAAC TTACTGCTTT TGTGTCCAAG TCATTTGATC AGAAGATCAA GGAGAAGAAG GAGATGATCA CTTACCGGGA GGTGTTGGAA AGCGGCCCAG CTCGGGGCAA GGAGCCTGGC TGCGGAGAAG GGGCCCGGGA GGACGGACTA GCGGGGAACC GGTGTATAGG AGGGGGTGGC GGCGGTGGAG GAGGTGGTGG AGGGGCCAGA TCCCCGGTCT TGGAGCTCGA TCTGTCCGTG GAGAGGATCA GGGAGAGTGG AAGCCCGAAG CTCACTGAGG TATCCCCAGA GATAAAGGAA CGGAAGGAGG AGCTGAAGCA GCAGGCACTG GAGGAAGAGG GACAGACTAA GATCAAGCAG AGAAGGAGTC GGACTAACTT CACCCTGGAG CAGCTGAATG AGCTGGAGAG ATTGTTTGAT GAGACCCACT ACCCAGATGC CTTCATGAGG GAGGAGTTGA GCCAGCGCCT TGGCCTGTCA GAGGCCAGAG TTCAGGTCTG GTTTCAAAAC AGAAGGGCAA AATGCAGAAA ACAAGAAAAT CAGCTCCATA AAGGGGTCCT GATAGGAGCA GGGAGCCAGT TTGAAGCGTG TAGAGTCGCA CCTTATGTCA ATGTGGGAGC CCTGAGGATG CCATTCCAGC AGGTTCAGGC ACAGTTGCAG CTGGACAGCG CCGTGGCCCA CGCCCACCAC CACCTCCATC CTCACCTGAC GGCGCATGCG CCCTACATGA TGTTCCCGGC CCCGCCCTTC GGACTCCCGC TGGCGACACT GGCTGCGGAG ACGGCGACGG CAGCGTCTGT AGTTGCGGCA GCTGCGGCTG CTAAAACCTC TAGCAAGAAC TCGAGCATTG CAGATCTTAG ACTTAAAGCC AAAAAACACG CAGCAGCTCT AGGACTGTGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
OXa22988 |
Clone ID Related Accession (Same CDS sequence) |
NM_001100224.1
|
Accession Version |
NM_001100224.1 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 936bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2019-12-21 |
Organism |
Xenopus tropicalis(tropical clawed frog) |
Product |
short stature homeobox protein 2 |
Comment |
Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from DQ675518.1.
##Evidence-Data-START##
Transcript exon combination :: DQ675518.1, DR894820.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns SAMD00028294, SAMD00028298 [ECO:0000348]
##Evidence-Data-END##
|
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901
| ATGGAAGAAC TTACTGCTTT TGTGTCCAAG TCATTTGATC AGAAGATCAA GGAGAAGAAG GAGATGATCA CTTACCGGGA GGTGTTGGAA AGCGGCCCAG CTCGGGGCAA GGAGCCTGGC TGCGGAGAAG GGGCCCGGGA GGACGGACTA GCGGGGAACC GGTGTATAGG AGGGGGTGGC GGCGGTGGAG GAGGTGGTGG AGGGGCCAGA TCCCCGGTCT TGGAGCTCGA TCTGTCCGTG GAGAGGATCA GGGAGAGTGG AAGCCCGAAG CTCACTGAGG TATCCCCAGA GATAAAGGAA CGGAAGGAGG AGCTGAAGCA GCAGGCACTG GAGGAAGAGG GACAGACTAA GATCAAGCAG AGAAGGAGTC GGACTAACTT CACCCTGGAG CAGCTGAATG AGCTGGAGAG ATTGTTTGAT GAGACCCACT ACCCAGATGC CTTCATGAGG GAGGAGTTGA GCCAGCGCCT TGGCCTGTCA GAGGCCAGAG TTCAGGTCTG GTTTCAAAAC AGAAGGGCAA AATGCAGAAA ACAAGAAAAT CAGCTCCATA AAGGGGTCCT GATAGGAGCA GGGAGCCAGT TTGAAGCGTG TAGAGTCGCA CCTTATGTCA ATGTGGGAGC CCTGAGGATG CCATTCCAGC AGGATAGTCA TTGCAACGTG CCATCCTTGT CCTTCCAGGT TCAGGCACAG TTGCAGCTGG ACAGCGCCGT GGCCCACGCC CACCACCACC TCCATCCTCA CCTGACGGCG CATGCGCCCT ACATGATGTT CCCGGCCCCG CCCTTCGGAC TCCCGCTGGC GACACTGGCT GCGGAGACGG CGACGGCAGC GTCTGTAGTT GCGGCAGCTG CGGCTGCTAA AACCTCTAGC AAGAACTCGA GCATTGCAGA TCTTAGACTT AAAGCCAAAA AACACGCAGC AGCTCTAGGA CTGTGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
NP_001093694.1 |
CDS | 156..1091 |
Translation | |
Target ORF information:
RefSeq Version | NM_001100224.1 |
Organism | Xenopus tropicalis(tropical clawed frog) |
Definition | Xenopus tropicalis short stature homeobox 2 (shox2), mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
NM_001100224.1 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901
| ATGGAAGAAC TTACTGCTTT TGTGTCCAAG TCATTTGATC AGAAGATCAA GGAGAAGAAG GAGATGATCA CTTACCGGGA GGTGTTGGAA AGCGGCCCAG CTCGGGGCAA GGAGCCTGGC TGCGGAGAAG GGGCCCGGGA GGACGGACTA GCGGGGAACC GGTGTATAGG AGGGGGTGGC GGCGGTGGAG GAGGTGGTGG AGGGGCCAGA TCCCCGGTCT TGGAGCTCGA TCTGTCCGTG GAGAGGATCA GGGAGAGTGG AAGCCCGAAG CTCACTGAGG TATCCCCAGA GATAAAGGAA CGGAAGGAGG AGCTGAAGCA GCAGGCACTG GAGGAAGAGG GACAGACTAA GATCAAGCAG AGAAGGAGTC GGACTAACTT CACCCTGGAG CAGCTGAATG AGCTGGAGAG ATTGTTTGAT GAGACCCACT ACCCAGATGC CTTCATGAGG GAGGAGTTGA GCCAGCGCCT TGGCCTGTCA GAGGCCAGAG TTCAGGTCTG GTTTCAAAAC AGAAGGGCAA AATGCAGAAA ACAAGAAAAT CAGCTCCATA AAGGGGTCCT GATAGGAGCA GGGAGCCAGT TTGAAGCGTG TAGAGTCGCA CCTTATGTCA ATGTGGGAGC CCTGAGGATG CCATTCCAGC AGGATAGTCA TTGCAACGTG CCATCCTTGT CCTTCCAGGT TCAGGCACAG TTGCAGCTGG ACAGCGCCGT GGCCCACGCC CACCACCACC TCCATCCTCA CCTGACGGCG CATGCGCCCT ACATGATGTT CCCGGCCCCG CCCTTCGGAC TCCCGCTGGC GACACTGGCT GCGGAGACGG CGACGGCAGC GTCTGTAGTT GCGGCAGCTG CGGCTGCTAA AACCTCTAGC AAGAACTCGA GCATTGCAGA TCTTAGACTT AAAGCCAAAA AACACGCAGC AGCTCTAGGA CTGTGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
OXa30226 |
Clone ID Related Accession (Same CDS sequence) |
XM_012962582.2
, XM_012962582.3
|
Accession Version |
XM_012962582.3 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 900bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2019-12-17 |
Organism |
Xenopus tropicalis(tropical clawed frog) |
Product |
short stature homeobox protein 2 isoform X1 |
Comment |
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030681.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process
On Dec 18, 2019 this sequence version replaced XM_012962582.2.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Xenopus tropicalis Annotation Release 104
Annotation Version :: 104
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 8.3
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
|
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841
| ATGGAAGAAC TTACTGCTTT TGTGTCCAAG TCATTTGATC AGAAGATCAA GGAGAAGAAG GAGATGATCA CTTACCGGGA GGTGTTGGAA AGCGGCCCAG CTCGGGGCAA GGAGCCTGGC TGCGGAGAAG GGGCCCGGGA GGACGGACTA GCGGGGAACC GGTGTATAGG AGGGGGTGGC GGCGGTGGAG GAGGTGGTGG AGGGGCCAGA TCCCCGGTCT TGGAGCTCGA TCTGTCCGTG GAGAGGATCA GGGAGAGTGG AAGCCCGAAG CTCACTGAGG TATCCCCAGA GATAAAGGAA CGGAAGGAGG AGCTGAAGCA GCAGGCACTG GAGGAAGAGG GACAGACTAA GATCAAGCAG AGAAGGAGTC GGACTAACTT CACCCTGGAG CAGCTGAATG AGCTGGAGAG ATTGTTTGAT GAGACCCACT ACCCAGATGC CTTCATGAGG GAGGAGTTGA GCCAGCGCCT TGGCCTGTCA GAGGCCAGAG TTCAGGTCTG GTTTCAAAAC AGAAGGGCAA AATGCAGAAA ACAAGAAAAT CAGCTCCATA AAGGGGTCCT GATAGGAGCA GGGAGCCAGT TTGAAGCGTG TAGAGTCGCA CCTTATGTCA ATGTGGGAGC CCTGAGGATG CCATTCCAGC AGGTTCAGGC ACAGTTGCAG CTGGACAGCG CCGTGGCCCA CGCCCACCAC CACCTCCATC CTCACCTGAC GGCGCATGCG CCCTACATGA TGTTCCCGGC CCCGCCCTTC GGACTCCCGC TGGCGACACT GGCTGCGGAG ACGGCGACGG CAGCGTCTGT AGTTGCGGCA GCTGCGGCTG CTAAAACCTC TAGCAAGAAC TCGAGCATTG CAGATCTTAG ACTTAAAGCC AAAAAACACG CAGCAGCTCT AGGACTGTGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
XP_012818036.1 |
CDS | 417..1316 |
Translation | |
Target ORF information:
RefSeq Version | XM_012962582.3 |
Organism | Xenopus tropicalis(tropical clawed frog) |
Definition | Xenopus tropicalis short stature homeobox 2 (shox2), transcript variant X1, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
XM_012962582.3 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841
| ATGGAAGAAC TTACTGCTTT TGTGTCCAAG TCATTTGATC AGAAGATCAA GGAGAAGAAG GAGATGATCA CTTACCGGGA GGTGTTGGAA AGCGGCCCAG CTCGGGGCAA GGAGCCTGGC TGCGGAGAAG GGGCCCGGGA GGACGGACTA GCGGGGAACC GGTGTATAGG AGGGGGTGGC GGCGGTGGAG GAGGTGGTGG AGGGGCCAGA TCCCCGGTCT TGGAGCTCGA TCTGTCCGTG GAGAGGATCA GGGAGAGTGG AAGCCCGAAG CTCACTGAGG TATCCCCAGA GATAAAGGAA CGGAAGGAGG AGCTGAAGCA GCAGGCACTG GAGGAAGAGG GACAGACTAA GATCAAGCAG AGAAGGAGTC GGACTAACTT CACCCTGGAG CAGCTGAATG AGCTGGAGAG ATTGTTTGAT GAGACCCACT ACCCAGATGC CTTCATGAGG GAGGAGTTGA GCCAGCGCCT TGGCCTGTCA GAGGCCAGAG TTCAGGTCTG GTTTCAAAAC AGAAGGGCAA AATGCAGAAA ACAAGAAAAT CAGCTCCATA AAGGGGTCCT GATAGGAGCA GGGAGCCAGT TTGAAGCGTG TAGAGTCGCA CCTTATGTCA ATGTGGGAGC CCTGAGGATG CCATTCCAGC AGGTTCAGGC ACAGTTGCAG CTGGACAGCG CCGTGGCCCA CGCCCACCAC CACCTCCATC CTCACCTGAC GGCGCATGCG CCCTACATGA TGTTCCCGGC CCCGCCCTTC GGACTCCCGC TGGCGACACT GGCTGCGGAG ACGGCGACGG CAGCGTCTGT AGTTGCGGCA GCTGCGGCTG CTAAAACCTC TAGCAAGAAC TCGAGCATTG CAGATCTTAG ACTTAAAGCC AAAAAACACG CAGCAGCTCT AGGACTGTGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.