Gene Symbol |
borcs5 |
Entrez Gene ID |
100127605 |
Full Name |
BLOC-1 related complex subunit 5 |
Synonyms |
loh12cr1 |
General protein information |
- Preferred Names
BLOC-1 related complex subunit 5
Names
BLOC-1-related complex subunit 5 loss of heterozygosity 12 chromosomal region 1 protein homolog Loss of heterozygosity 12 chromosomal region 1 protein homolog loss of heterozygosity, 12, chromosomal region 1
|
Gene Type |
protein-coding |
Organism |
Xenopus tropicalis(tropical clawed frog) |
mRNA and Protein(s)
mRNA |
Protein |
Name |
XM_012958496.2 |
XP_012813950.1 |
loss of heterozygosity 12 chromosomal region 1 protein homolog isoform X1 |
XM_012958496.3 |
XP_012813950.1 |
BLOC-1-related complex subunit 5 isoform X1 |
NM_001112962.1 |
NP_001106433.1 |
BLOC-1-related complex subunit 5 |
Homo sapiens (human) |
LOH12CR1 |
NP_477517.1 |
Mus musculus (house mouse) |
Loh12cr1 |
NP_080647.2 |
|
LOH12CR1 |
XP_001084966.1 |
Bos taurus (cattle) |
LOH12CR1 |
NP_001069823.1 |
Gallus gallus (chicken) |
LOH12CR1 |
NP_001026528.1 |
Canis lupus familiaris (dog) |
LOH12CR1 |
XP_005637192.1 |
Drosophila melanogaster (fruit fly) |
CG11802 |
NP_572759.1 |
Pan troglodytes (chimpanzee) |
LOH12CR1 |
XP_001139139.2 |
Rattus norvegicus (Norway rat) |
Loh12cr1 |
NP_001102120.1 |
Danio rerio (zebrafish) |
loh12cr1 |
NP_001007053.1 |
Anopheles gambiae (African malaria mosquito) |
AgaP_AGAP009657 |
XP_001689139.1 |
Xenopus tropicalis (tropical clawed frog) |
loh12cr1 |
NP_001106433.1 |
Related articles in PubMed
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following borcs5 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the borcs5 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID |
OXa21392 |
Clone ID Related Accession (Same CDS sequence) |
NM_001112962.1
|
Accession Version |
NM_001112962.1 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 591bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2019-12-22 |
Organism |
Xenopus tropicalis(tropical clawed frog) |
Product |
BLOC-1-related complex subunit 5 |
Comment |
Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC153719.1.
##Evidence-Data-START##
Transcript exon combination :: BC153719.1, EL809181.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns SAMD00028290, SAMD00028291 [ECO:0000348]
##Evidence-Data-END##
|
1 61 121 181 241 301 361 421 481 541
| ATGGGTGCTG AGCAGAGTTC TGAGGGGGAT CTCAGGCAGA ATGATCTCAG CTCCTCTGTT TCACCATCTC CTGCCAAGCA GAAAGCAAAG ATGGACGACA TTGTGGTTGT AGCCCCTGGA ACCCAGTCCC TCCGTAACGT GAGTAAGGAC CCTGAAGTTA TCAAGTTACA GGAGATACCG ACGTTTCAAC CACTTCTAAA AGGTCTCCTG AGCGGTCAGA CATCCCCCAC TAACGTCCGG CTCGAGAGAC TGGACTCCCC CCAAGTATTA CAGCTGTGCG TTCGTTACCA GGAGCACCTG CACCAGTGCG CAGAGGCCGT GTCCTTCGAC CAGAACGCCC TAGTAAAGAG AATTAAGGAG ATGGACTCCT CGGTGGACGG ACTTTACAGC CTCATGCAGG AAAGACAGAA GCGCTTCGCC AAGTACGCCG AGCAAATCCA GAAGGTCAAC GAGATGTCTG CCATTCTCCG ACGCATCCAG ATGGGCATCG ACCAGACGGT TCCCCTCATG GAGAAGCTAA ACATCATGCT GCCCGAAGGC GAGAGACTGG AGCCGTTCTG TATGAGCCCC GACAGGGAGA GCAAACCGTA G |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
NP_001106433.1 |
CDS | 138..728 |
Translation | |
Target ORF information:
RefSeq Version | NM_001112962.1 |
Organism | Xenopus tropicalis(tropical clawed frog) |
Definition | Xenopus tropicalis BLOC-1 related complex subunit 5 (borcs5), mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
NM_001112962.1 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541
| ATGGGTGCTG AGCAGAGTTC TGAGGGGGAT CTCAGGCAGA ATGATCTCAG CTCCTCTGTT TCACCATCTC CTGCCAAGCA GAAAGCAAAG ATGGACGACA TTGTGGTTGT AGCCCCTGGA ACCCAGTCCC TCCGTAACGT GAGTAAGGAC CCTGAAGTTA TCAAGTTACA GGAGATACCG ACGTTTCAAC CACTTCTAAA AGGTCTCCTG AGCGGTCAGA CATCCCCCAC TAACGTCCGG CTCGAGAGAC TGGACTCCCC CCAAGTATTA CAGCTGTGCG TTCGTTACCA GGAGCACCTG CACCAGTGCG CAGAGGCCGT GTCCTTCGAC CAGAACGCCC TAGTAAAGAG AATTAAGGAG ATGGACTCCT CGGTGGACGG ACTTTACAGC CTCATGCAGG AAAGACAGAA GCGCTTCGCC AAGTACGCCG AGCAAATCCA GAAGGTCAAC GAGATGTCTG CCATTCTCCG ACGCATCCAG ATGGGCATCG ACCAGACGGT TCCCCTCATG GAGAAGCTAA ACATCATGCT GCCCGAAGGC GAGAGACTGG AGCCGTTCTG TATGAGCCCC GACAGGGAGA GCAAACCGTA G |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
OXa30915 |
Clone ID Related Accession (Same CDS sequence) |
XM_012958496.2
, XM_012958496.3
|
Accession Version |
XM_012958496.2 |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 591bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2016-09-07 |
Organism |
Xenopus tropicalis(tropical clawed frog) |
Product |
loss of heterozygosity 12 chromosomal region 1 protein homolog isoform X1 |
Comment |
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_016683387.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process
On Sep 8, 2016 this sequence version replaced XM_012958496.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Xenopus tropicalis Annotation Release 103
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 7.1
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
|
1 61 121 181 241 301 361 421 481 541
| ATGGGTGCTG AGCAGAGTTC TGAGGGGGAT CTCAGGCAGA ATGATCTCAG CTCCTCTGTT TCACCATCTC CTGCCAAGCA GAAAGCAAAG ATGGACGACA TTGTGGTTGT AGCCCCTGGA ACCCAGTCCC TCCGTAACGT GAGTAAGGAC CCTGAAGTTA TCAAGTTACA AGAGATTCCG ACATTTCAAC CACTTCTAAA AGGTCTCCTG AGTGGTCAGA CATCCCCCAC TAACGTCCGG CTCGAGAGAC TGGACTCCCC CCAAGTATTA CAGCTGTGCG TGCGTTACCA GGAACACCTG CACCAGTGCG CAGAGGCCGT GTCCTTCGAC CAGAACGCCC TAGTAAAGAG AATTAAGGAG ATGGACTCCT CGGTGGACGG ACTTTACAGC CTCATGCAGG AAAGACAGAA GCGCTTCGCC AAGTACGCCG AGCAAATCCA GAAGGTCAAC GAGATGTCTG CCATTCTCCG ACGCATCCAG ATGGGCATCG ACCAGACGGT TCCCCTCATG GAGAAACTAA ACATCATGCT GCCCGAAGGC GAGAGACTGG AGCCGTTCTG TATGAGCCCC GACAGGGAGA GCAAACCGTA G |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
XP_012813950.1 |
CDS | 400..990 |
Translation | |
Target ORF information:
RefSeq Version | XM_012958496.2 |
Organism | Xenopus tropicalis(tropical clawed frog) |
Definition | Xenopus tropicalis BLOC-1 related complex subunit 5 (borcs5), transcript variant X1, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
XM_012958496.2 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541
| ATGGGTGCTG AGCAGAGTTC TGAGGGGGAT CTCAGGCAGA ATGATCTCAG CTCCTCTGTT TCACCATCTC CTGCCAAGCA GAAAGCAAAG ATGGACGACA TTGTGGTTGT AGCCCCTGGA ACCCAGTCCC TCCGTAACGT GAGTAAGGAC CCTGAAGTTA TCAAGTTACA AGAGATTCCG ACATTTCAAC CACTTCTAAA AGGTCTCCTG AGTGGTCAGA CATCCCCCAC TAACGTCCGG CTCGAGAGAC TGGACTCCCC CCAAGTATTA CAGCTGTGCG TGCGTTACCA GGAACACCTG CACCAGTGCG CAGAGGCCGT GTCCTTCGAC CAGAACGCCC TAGTAAAGAG AATTAAGGAG ATGGACTCCT CGGTGGACGG ACTTTACAGC CTCATGCAGG AAAGACAGAA GCGCTTCGCC AAGTACGCCG AGCAAATCCA GAAGGTCAAC GAGATGTCTG CCATTCTCCG ACGCATCCAG ATGGGCATCG ACCAGACGGT TCCCCTCATG GAGAAACTAA ACATCATGCT GCCCGAAGGC GAGAGACTGG AGCCGTTCTG TATGAGCCCC GACAGGGAGA GCAAACCGTA G |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
OXa30915 |
Clone ID Related Accession (Same CDS sequence) |
XM_012958496.2
, XM_012958496.3
|
Accession Version |
XM_012958496.3 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 591bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2019-12-17 |
Organism |
Xenopus tropicalis(tropical clawed frog) |
Product |
BLOC-1-related complex subunit 5 isoform X1 |
Comment |
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030679.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process
On Dec 18, 2019 this sequence version replaced XM_012958496.2.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Xenopus tropicalis Annotation Release 104
Annotation Version :: 104
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 8.3
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
|
1 61 121 181 241 301 361 421 481 541
| ATGGGTGCTG AGCAGAGTTC TGAGGGGGAT CTCAGGCAGA ATGATCTCAG CTCCTCTGTT TCACCATCTC CTGCCAAGCA GAAAGCAAAG ATGGACGACA TTGTGGTTGT AGCCCCTGGA ACCCAGTCCC TCCGTAACGT GAGTAAGGAC CCTGAAGTTA TCAAGTTACA AGAGATTCCG ACATTTCAAC CACTTCTAAA AGGTCTCCTG AGTGGTCAGA CATCCCCCAC TAACGTCCGG CTCGAGAGAC TGGACTCCCC CCAAGTATTA CAGCTGTGCG TGCGTTACCA GGAACACCTG CACCAGTGCG CAGAGGCCGT GTCCTTCGAC CAGAACGCCC TAGTAAAGAG AATTAAGGAG ATGGACTCCT CGGTGGACGG ACTTTACAGC CTCATGCAGG AAAGACAGAA GCGCTTCGCC AAGTACGCCG AGCAAATCCA GAAGGTCAAC GAGATGTCTG CCATTCTCCG ACGCATCCAG ATGGGCATCG ACCAGACGGT TCCCCTCATG GAGAAACTAA ACATCATGCT GCCCGAAGGC GAGAGACTGG AGCCGTTCTG TATGAGCCCC GACAGGGAGA GCAAACCGTA G |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
XP_012813950.1 |
CDS | 180..770 |
Translation | |
Target ORF information:
RefSeq Version | XM_012958496.3 |
Organism | Xenopus tropicalis(tropical clawed frog) |
Definition | Xenopus tropicalis BLOC-1 related complex subunit 5 (borcs5), transcript variant X1, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
XM_012958496.3 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541
| ATGGGTGCTG AGCAGAGTTC TGAGGGGGAT CTCAGGCAGA ATGATCTCAG CTCCTCTGTT TCACCATCTC CTGCCAAGCA GAAAGCAAAG ATGGACGACA TTGTGGTTGT AGCCCCTGGA ACCCAGTCCC TCCGTAACGT GAGTAAGGAC CCTGAAGTTA TCAAGTTACA AGAGATTCCG ACATTTCAAC CACTTCTAAA AGGTCTCCTG AGTGGTCAGA CATCCCCCAC TAACGTCCGG CTCGAGAGAC TGGACTCCCC CCAAGTATTA CAGCTGTGCG TGCGTTACCA GGAACACCTG CACCAGTGCG CAGAGGCCGT GTCCTTCGAC CAGAACGCCC TAGTAAAGAG AATTAAGGAG ATGGACTCCT CGGTGGACGG ACTTTACAGC CTCATGCAGG AAAGACAGAA GCGCTTCGCC AAGTACGCCG AGCAAATCCA GAAGGTCAAC GAGATGTCTG CCATTCTCCG ACGCATCCAG ATGGGCATCG ACCAGACGGT TCCCCTCATG GAGAAACTAA ACATCATGCT GCCCGAAGGC GAGAGACTGG AGCCGTTCTG TATGAGCCCC GACAGGGAGA GCAAACCGTA G |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.