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chmp2a cDNA ORF clone, Xenopus tropicalis(tropical clawed frog)

Summary

Gene Symbol chmp2a
Entrez Gene ID 448496
Full Name charged multivesicular body protein 2A
Synonyms bc-2,bc2,chmp2,vps2,vps2a
General protein information
Preferred Names

charged multivesicular body protein 2A

Names

charged multivesicular body protein 2a
chromatin modifying protein 2A
chromatin-modifying protein 2a
Gene Type protein-coding
Organism Xenopus tropicalis(tropical clawed frog)

Reference Sequences (RefSeq)

mRNA and Protein(s)

mRNA Protein Name
XM_012966412.3 XP_012821866.1 charged multivesicular body protein 2a isoform X1
NM_001005008.1 NP_001005008.1 charged multivesicular body protein 2a
XM_012966412.2 XP_012821866.1 charged multivesicular body protein 2a isoform X1

Pathways from BioSystems


Homologies


Xenopus tropicalis (tropical clawed frog) chmp2a NP_001005008.1
Homo sapiens (human) CHMP2A NP_940818.1
Canis lupus familiaris (dog) CHMP2A XP_850536.1
Anopheles gambiae (African malaria mosquito) AgaP_AGAP001285 XP_321862.3
Caenorhabditis elegans (roundworm) vps-2 NP_496717.1
Schizosaccharomyces pombe (fission yeast) did4 NP_593871.3
Oryza sativa (rice) Os07g0236800 NP_001059248.1
Bos taurus (cattle) CHMP2A NP_001029722.1
Mus musculus (house mouse) Chmp2a NP_081161.1
Rattus norvegicus (Norway rat) Chmp2a NP_001102376.1
Danio rerio (zebrafish) bc2 NP_998682.1
Neurospora crassa NCU00435 XP_956699.1
Pan troglodytes (chimpanzee) CHMP2A XP_003316813.1
CHMP2A XP_001099219.1
Gallus gallus (chicken) CHMP2A NP_001074361.1
Drosophila melanogaster (fruit fly) vps2 NP_651455.1
Magnaporthe oryzae (rice blast fungus) MGG_05208 XP_003712753.1
Saccharomyces cerevisiae (baker's yeast) DID4 NP_012924.2
Kluyveromyces lactis KLLA0B13343g XP_452125.1
Eremothecium gossypii AGOS_ABR002C NP_982948.1
Arabidopsis thaliana (thale cress) VPS2.1 NP_565336.1

Gene Ontology


Bibliography

Related articles in PubMed

Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative.
Klein SL, Strausberg RL, Wagner L, Pontius J, Clifton SW, Richardson P
Developmental dynamics : an official publication of the American Association of Anatomists225(4)384-91(2002 Dec)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following chmp2a gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the chmp2a cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
OXa00442 NM_001005008.1
Latest version!		 Xenopus tropicalis charged multivesicular body protein 2A (chmp2a), mRNA. pcDNA3.1+/C-(K)DYK or customized vector 7-9 $174.30
$249.00
OXa00442 XM_012966412.3
Latest version!		 Xenopus tropicalis charged multivesicular body protein 2A (chmp2a), transcript variant X1, mRNA. pcDNA3.1+/C-(K)DYK or customized vector 9-11 $139.30
$199.00
View Old Accession Versions >>
OXa00442 XM_012966412.2 Xenopus tropicalis charged multivesicular body protein 2A (chmp2a), transcript variant X1, mRNA. pcDNA3.1+/C-(K)DYK or customized vector 7-9 $174.30
$249.00
Hide Old Accession Versions >>

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)


CloneID OXa00442
Clone ID Related Accession (Same CDS sequence) XM_012966412.3 , NM_001005008.1 , XM_012966412.2
Accession Version NM_001005008.1 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 663bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2019-12-25
Organism Xenopus tropicalis(tropical clawed frog)
Product charged multivesicular body protein 2a
Comment Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC076657.1. ##Evidence-Data-START## Transcript exon combination :: BC076657.1, DT390548.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00028290, SAMD00028291 [ECO:0000348] ##Evidence-Data-END## 

1
61
121
181
241
301
361
421
481
541
601
661
ATGGAGTTCC TGTTTGGACG ACGCAAGACC CCAGAAGAGA TGCTGAGGCA AAATCAGCGA 
GCTCTCAACA AGGCTATGAG AGAAATGGAT CGGGAGAGAC AGAAACTAGA GCAACAAGAG 
AAGAAAATAA TTGCGGATAT TAAAAAAATG GCAAAACAAG GACAAATGGA TGCAGTGAAA 
ATCATGGCAA AAGATCTCGT ACGCACTCGT CGTTATGTAA AGAAATTTAT CATGATGCGG 
GCAAACATCC AGGCGGTTTC ACTTAAAATT CAAACACTAA AGTCCAACAA TTCTATGGCT 
CAAGCTATGA AAGGAGTAAC GAAAGCCATG GCCACAATGA ACAGACAGCT AAAGCTTCCC 
CAGATACAGA AAATAATGAT GGAGTTTGAA AAGCAATCAG AAATTATGGA CATGAAAGAA 
GAAATGATGA ATGATGCCAT TGATGATGCC ATGGGTGATG AAGATGATGA GGAGGAAAGC 
GATGCTGTTG TATCTCAGGT CCTGGATGAG CTGGGCTTAA CTCTGACCGA TGAGCTGTCT 
AACCTCCCAT CAACAGGGGG CTCCCTCAGT GTGGCTGGAG CAAAGAAAGG CGAACCCTCA 
GCGGCCTTGG CCGATGCAGA TGCAGATTTA GAAGAGCGGC TGAACAACCT GCGACGGGAC 
TAA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq NP_001005008.1
CDS86..748
Translation

Target ORF information:

RefSeq Version NM_001005008.1
Organism Xenopus tropicalis(tropical clawed frog)
Definition Xenopus tropicalis charged multivesicular body protein 2A (chmp2a), mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 NM_001005008.1

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
ATGGAGTTCC TGTTTGGACG ACGCAAGACC CCAGAAGAGA TGCTGAGGCA AAATCAGCGA 
GCTCTCAACA AGGCTATGAG AGAAATGGAT CGGGAGAGAC AGAAACTAGA GCAACAAGAG 
AAGAAAATAA TTGCGGATAT TAAAAAAATG GCAAAACAAG GACAAATGGA TGCAGTGAAA 
ATCATGGCAA AAGATCTCGT ACGCACTCGT CGTTATGTAA AGAAATTTAT CATGATGCGG 
GCAAACATCC AGGCGGTTTC ACTTAAAATT CAAACACTAA AGTCCAACAA TTCTATGGCT 
CAAGCTATGA AAGGAGTAAC GAAAGCCATG GCCACAATGA ACAGACAGCT AAAGCTTCCC 
CAGATACAGA AAATAATGAT GGAGTTTGAA AAGCAATCAG AAATTATGGA CATGAAAGAA 
GAAATGATGA ATGATGCCAT TGATGATGCC ATGGGTGATG AAGATGATGA GGAGGAAAGC 
GATGCTGTTG TATCTCAGGT CCTGGATGAG CTGGGCTTAA CTCTGACCGA TGAGCTGTCT 
AACCTCCCAT CAACAGGGGG CTCCCTCAGT GTGGCTGGAG CAAAGAAAGG CGAACCCTCA 
GCGGCCTTGG CCGATGCAGA TGCAGATTTA GAAGAGCGGC TGAACAACCT GCGACGGGAC 
TAA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID OXa00442
Clone ID Related Accession (Same CDS sequence) XM_012966412.3 , NM_001005008.1 , XM_012966412.2
Accession Version XM_012966412.2 Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 663bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2016-09-07
Organism Xenopus tropicalis(tropical clawed frog)
Product charged multivesicular body protein 2a isoform X1
Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030683.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 8, 2016 this sequence version replaced XM_012966412.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Xenopus tropicalis Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

1
61
121
181
241
301
361
421
481
541
601
661
ATGGAGTTCC TGTTTGGACG ACGCAAGACC CCAGAAGAGA TGCTGAGGCA AAATCAGCGA 
GCTCTCAACA AGGCTATGAG AGAAATGGAT CGGGAGAGAC AGAAACTAGA GCAACAAGAG 
AAGAAAATAA TTGCGGATAT TAAAAAAATG GCAAAACAAG GACAAATGGA TGCAGTGAAA 
ATCATGGCAA AAGATCTCGT ACGCACTCGT CGTTATGTAA AGAAATTTAT CATGATGCGG 
GCAAACATCC AGGCGGTTTC ACTTAAAATT CAAACACTAA AGTCCAACAA TTCTATGGCT 
CAAGCTATGA AAGGAGTAAC GAAAGCCATG GCCACAATGA ACAGACAGCT AAAGCTTCCC 
CAGATACAGA AAATAATGAT GGAGTTTGAA AAGCAATCAG AAATTATGGA CATGAAAGAA 
GAAATGATGA ATGATGCCAT TGATGATGCC ATGGGTGATG AAGATGATGA GGAGGAAAGC 
GATGCTGTTG TATCTCAGGT CCTGGATGAG CTGGGCTTAA CTCTGACCGA TGAGCTGTCT 
AACCTCCCAT CAACAGGGGG CTCCCTCAGT GTGGCTGGAG CAAAGAAAGG CGAACCCTCA 
GCGGCCTTGG CCGATGCAGA TGCAGATTTA GAAGAGCGGC TGAACAACCT GCGACGGGAC 
TAA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq XP_012821866.1
CDS89..751
Translation

Target ORF information:

RefSeq Version XM_012966412.2
Organism Xenopus tropicalis(tropical clawed frog)
Definition Xenopus tropicalis charged multivesicular body protein 2A (chmp2a), transcript variant X1, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 XM_012966412.2

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
ATGGAGTTCC TGTTTGGACG ACGCAAGACC CCAGAAGAGA TGCTGAGGCA AAATCAGCGA 
GCTCTCAACA AGGCTATGAG AGAAATGGAT CGGGAGAGAC AGAAACTAGA GCAACAAGAG 
AAGAAAATAA TTGCGGATAT TAAAAAAATG GCAAAACAAG GACAAATGGA TGCAGTGAAA 
ATCATGGCAA AAGATCTCGT ACGCACTCGT CGTTATGTAA AGAAATTTAT CATGATGCGG 
GCAAACATCC AGGCGGTTTC ACTTAAAATT CAAACACTAA AGTCCAACAA TTCTATGGCT 
CAAGCTATGA AAGGAGTAAC GAAAGCCATG GCCACAATGA ACAGACAGCT AAAGCTTCCC 
CAGATACAGA AAATAATGAT GGAGTTTGAA AAGCAATCAG AAATTATGGA CATGAAAGAA 
GAAATGATGA ATGATGCCAT TGATGATGCC ATGGGTGATG AAGATGATGA GGAGGAAAGC 
GATGCTGTTG TATCTCAGGT CCTGGATGAG CTGGGCTTAA CTCTGACCGA TGAGCTGTCT 
AACCTCCCAT CAACAGGGGG CTCCCTCAGT GTGGCTGGAG CAAAGAAAGG CGAACCCTCA 
GCGGCCTTGG CCGATGCAGA TGCAGATTTA GAAGAGCGGC TGAACAACCT GCGACGGGAC 
TAA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID OXa00442
Clone ID Related Accession (Same CDS sequence) XM_012966412.3 , NM_001005008.1 , XM_012966412.2
Accession Version XM_012966412.3 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 663bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2019-12-17
Organism Xenopus tropicalis(tropical clawed frog)
Product charged multivesicular body protein 2a isoform X1
Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030683.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Dec 18, 2019 this sequence version replaced XM_012966412.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Xenopus tropicalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

1
61
121
181
241
301
361
421
481
541
601
661
ATGGAGTTCC TGTTTGGACG ACGCAAGACC CCAGAAGAGA TGCTGAGGCA AAATCAGCGA 
GCTCTCAACA AGGCTATGAG AGAAATGGAT CGGGAGAGAC AGAAACTAGA GCAACAAGAG 
AAGAAAATAA TTGCGGATAT TAAAAAAATG GCAAAACAAG GACAAATGGA TGCAGTGAAA 
ATCATGGCAA AAGATCTCGT ACGCACTCGT CGTTATGTAA AGAAATTTAT CATGATGCGG 
GCAAACATCC AGGCGGTTTC ACTTAAAATT CAAACACTAA AGTCCAACAA TTCTATGGCT 
CAAGCTATGA AAGGAGTAAC GAAAGCCATG GCCACAATGA ACAGACAGCT AAAGCTTCCC 
CAGATACAGA AAATAATGAT GGAGTTTGAA AAGCAATCAG AAATTATGGA CATGAAAGAA 
GAAATGATGA ATGATGCCAT TGATGATGCC ATGGGTGATG AAGATGATGA GGAGGAAAGC 
GATGCTGTTG TATCTCAGGT CCTGGATGAG CTGGGCTTAA CTCTGACCGA TGAGCTGTCT 
AACCTCCCAT CAACAGGGGG CTCCCTCAGT GTGGCTGGAG CAAAGAAAGG CGAACCCTCA 
GCGGCCTTGG CCGATGCAGA TGCAGATTTA GAAGAGCGGC TGAACAACCT GCGACGGGAC 
TAA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq XP_012821866.1
CDS63..725
Translation

Target ORF information:

RefSeq Version XM_012966412.3
Organism Xenopus tropicalis(tropical clawed frog)
Definition Xenopus tropicalis charged multivesicular body protein 2A (chmp2a), transcript variant X1, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 XM_012966412.3

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
ATGGAGTTCC TGTTTGGACG ACGCAAGACC CCAGAAGAGA TGCTGAGGCA AAATCAGCGA 
GCTCTCAACA AGGCTATGAG AGAAATGGAT CGGGAGAGAC AGAAACTAGA GCAACAAGAG 
AAGAAAATAA TTGCGGATAT TAAAAAAATG GCAAAACAAG GACAAATGGA TGCAGTGAAA 
ATCATGGCAA AAGATCTCGT ACGCACTCGT CGTTATGTAA AGAAATTTAT CATGATGCGG 
GCAAACATCC AGGCGGTTTC ACTTAAAATT CAAACACTAA AGTCCAACAA TTCTATGGCT 
CAAGCTATGA AAGGAGTAAC GAAAGCCATG GCCACAATGA ACAGACAGCT AAAGCTTCCC 
CAGATACAGA AAATAATGAT GGAGTTTGAA AAGCAATCAG AAATTATGGA CATGAAAGAA 
GAAATGATGA ATGATGCCAT TGATGATGCC ATGGGTGATG AAGATGATGA GGAGGAAAGC 
GATGCTGTTG TATCTCAGGT CCTGGATGAG CTGGGCTTAA CTCTGACCGA TGAGCTGTCT 
AACCTCCCAT CAACAGGGGG CTCCCTCAGT GTGGCTGGAG CAAAGAAAGG CGAACCCTCA 
GCGGCCTTGG CCGATGCAGA TGCAGATTTA GAAGAGCGGC TGAACAACCT GCGACGGGAC 
TAA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

PubMed

book

Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative.
Developmental dynamics : an official publication of the American Association of Anatomists225(4)384-91(2002 Dec)
Klein SL,Strausberg RL,Wagner L,Pontius J,Clifton SW,Richardson P