Bispecific Antibody Chain Mismatch Prevention Strategy: Multi-dimensional Design and Application Analysis

Nov 07, 2024

Duration: 3min

Eric Gong, Ph.D.

Senior Scientist

Dr. Eric Gong earned his Ph.D. in Structural Biology from the University of Science and Technology of China and has worked at Cornell University as a postdoctoral researcher. His research primarily focuses on the structure and biochemistry of nucleosomal epigenetics. Dr. Gong has published his work in prestigious journals, including the Journal of the American Chemical Society, Chemical Science, and Chemical Communications.

Bispecific antibodies (bsAbs) represent a groundbreaking class of antibodies capable of recognizing and binding to two different antigens simultaneously. This unique characteristic gives them extensive potential applications in the medical field, particularly in the treatment of cancer and autoimmune diseases [1]. Unlike traditional monospecific antibodies, which can target only a single antigen due to having one antigen-binding region, bispecific antibodies can concurrently target two distinct molecules through two separate antigen-binding regions (Figure 1). This dual-targeting capability enhances the precision and efficacy of treatments. For instance, certain bispecific antibodies can bind to both tumor cells and immune cells simultaneously, aiding the immune system in attacking cancer cells more effectively. Leveraging this mechanism, bispecific antibodies offer a more flexible and efficient approach to treating complex diseases.

Preventing Chain Mispairing: Preventing chain mispairing is a crucial challenge in the development of bsAbs. Here are some commonly used strategies to address mispairing:

Figure 1 Schematic Diagram of Monospecific and Bispecific Antibodies

Knobs-into-Holes (KIH) design

  • Overview: This strategy involves introducing "knob" and "hole" mutations to promote correct heavy chain-heavy chain pairing (Figure 2) [2].
  • Specific Mutations: Implement a "knob" mutation, such as T366W, at the interface of one heavy chain, and a corresponding "hole" mutation, such as T366S or L368A, at the same position on the other heavy chain (Figure 2).
  • Advantages: By leveraging the steric effects of the protein structure, this design improves the specificity and efficiency of chain pairing, thereby reducing the likelihood of mispairing.

Figure 2 Schematic Diagram of “Knob into Hole”

CrossMab design

  • Overview: This method promotes correct pairing by exchanging parts of the structure of the antibody light chain or heavy chain (Figure 3) [3].
  • Application: Suitable for various types of bi-specific antibody designs.
  • Advantages: Reduces chain mispairing while preserving antibody function.

Figure 3 Schematic Diagram of CrossMab

Covalent Linkage

  • Overview: Utilize covalent bonds to connect heavy and light chains, ensuring specific pairing.
  • Specific methods: Introduce disulfide bonds or other covalent linking techniques.
  • Advantages: Reduces chain dissociation and recombination, ensuring the structural stability of antibodies.

scFv-Fc design

  • Overview: Employ single-chain variable fragments (scFv) to connect Fc regions, forming bispecific antibodies (Figure 4) [4].
  • Application: By linking two scFv fragments to a single Fc region, a bispecific binding site is created.
  • Advantages: Reduces chain mispairing and enhances the specificity and stability of antibodies.

Figure 4 Schematic Diagram of scFv-Fc

Dual Variable Domain Immunoglobulin (DVD-Ig) Design

  • Overview: two variable regions are linked in series, each with distinct specificity (Figure 5) [5].
  • Application: Ideal for bispecific antibodies that need to simultaneously target two different antigens.
  • Advantages: Ensures specific pairing and functionality through structural design.

Figure 5 Schematic Diagram of DVS-Ig Structure

Quadroma technology

  • Overview: Utilize two different hybridoma cells to fuse and produce bispecific antibodies [6].
  • Application: Form bispecific antibodies through the correct combination of four heavy chains and light chains.
  • Advantages: Naturally selects for correct chain pairing, reducing the chance of mispairing.

Common Light Chain Design

  • Overview: Use the same light chain to pair with different heavy chains, ensuring specific pairing (Figure 6).
  • Application: Suitable for the design and production of bispecific antibodies.
  • Advantages: Reduces mispairing and improves production efficiency and purification outcomes.

Figure 6 Design Schematic of Common Light Chain

These strategies significantly reduce chain mismatches in bispecific antibodies, enhancing product purity and functionality by optimizing the structural design and production processes. Combining these approaches with current purification techniques such as affinity chromatography, ion exchange chromatography, and size exclusion chromatography can further optimize the production and purification of bispecific antibodies.

With more than 19 years of experience in protein expression, GenScript has developed a unique TurboCHO™ expression platform that efficiently expresses recombinant antibodies and proteins. Compared with conventional transient expression, the TurboCHO™ expression platform achieves higher yields of recombinant proteins and antibodies. This platform provides an economical and efficient way to produce secreted proteins and antibodies, helping customers complete functional, structural, and therapeutic studies in a short period of time. Additionally, GenScript offers a HEK 293 cell expression system for selection.

References

[1] Labrijn AF, Janmaat ML, Reichert JM, Parren PWHI. Bispecific antibodies: a mechanistic review of the pipeline. Nat Rev Drug Discov. 2019 Aug;18(8):585-608. doi: 10.1038/s41573-019-0028-1.

[2] Ridgway JB, Presta LG, Carter P. 'Knobs-into-holes' engineering of antibody CH3 domains for heavy chain heterodimerization. Protein Eng. 1996 Jul;9(7):617-21. doi: 10.1093/protein/9.7.617.

[3] Klein C, Schaefer W, Regula JT. The use of CrossMAb technology for the generation of bi- and multispecific antibodies. MAbs. 2016 Aug-Sep;8(6):1010-20. doi: 10.1080/19420862.2016.

[4] Kontermann RE, Brinkmann U. Bispecific antibodies. Drug Discov Today. 2015 Jul;20(7):838-47. doi: 10.1016/j.drudis.2015.02.008. Epub 2015 Feb 26. Erratum in: Drug Discov Today. 2019 Jul;24(7):1422. doi: 10.1016/j.drudis.2017.12.004.

[5] DiGiammarino E, Ghayur T, Liu J. Design and generation of DVD-Ig™ molecules for dual-specific targeting. Methods Mol Biol. 2012;899:145-56. doi: 10.1007/978-1-61779-921-1_9.

[6] Chelius D, Ruf P, Gruber P, Plöscher M, Liedtke R, Gansberger E, Hess J, Wasiliu M, Lindhofer H. Structural and functional characterization of the trifunctional antibody catumaxomab. MAbs. 2010 May-Jun;2(3):309-19. doi: 10.4161/mabs.2.3.11791.

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