col9a3 cDNA ORF clone, Cyprinodon variegatus(sheepshead minnow)

Gene
Clones
gRNAs

Summary

Gene Symbol	col9a3
Entrez Gene ID	107090271
Full Name	collagen type IX alpha 3 chain
Gene Type	protein-coding
Organism	Cyprinodon variegatus(sheepshead minnow)

mRNA and Protein(s)

mRNA	Protein	Name
XM_015383569.1	XP_015239055.1	collagen alpha-3(IX) chain

Pathways from BioSystems
Gene Ontology

The following col9a3 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the col9a3 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OCy14594	XM_015383569.1 Latest version!	Cyprinodon variegatus collagen, type IX, alpha 3 (col9a3), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	14-16	$426.30 $609.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

col9a3 ( XM_015383569.1 ) cDNA ORF clone, Cyprinodon variegatus(sheepshead minnow) -> XP_015239055.1 Cyprinodon variegatus collagen, type IX, alpha 3 (col9a3), mRNA.

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CloneID	OCy14594
Clone ID Related Accession (Same CDS sequence)	XM_015383569.1
Accession Version	XM_015383569.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2037bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-01-13
Organism	Cyprinodon variegatus(sheepshead minnow)
Product	collagen alpha-3(IX) chain
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_015150740.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Cyprinodon variegatus Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGACGGTGC TTTCTGCTCT TTGGGTGATC TTTCTGTGCC AGCTTCTGTC CTCATCTTCA 
GCCCAGCGGC CTGGCCCCAG AGGACCCCCT GGGCCACAAG GACCCCCAGG GCAACCAGGA 
AGGGATGGCA CTGATGGGAA ACCTGGACCT CCTGGGCTTC CAGGGAAAGC TGGCCCTAAA 
GGGAAAGCAG GAATACCAGG AGCACCAGGA AAACCCGGTC TACCAGGACT TCCAGGAGCT 
GATGGTTTGA CTGGCCCGGA TGGTCCTGCC GGCAAAGACG GACCCCCAGG GGAAACAGGT 
GACGCGGGCC CTCCCGGTCC ACCTGGACCT CCTGGCAGGG GGAGACCCGG CGCCCCAGGA 
TTACCTGGAA CCAATGGGTT GCCGGGCGGA ATAGGACCCC AGGGACCACC AGGTCCAGAG 
GGTCTTCCAG GACTTCAAGG ACCAACTGGA CCTGATGGAC CCCCGGGGCT TCCTGGTACC 
CTGCAAGATC TTACTGGTGA CCTTCTGTGT CCTGCTATCT GCCCTCCTGG TCCCCCTGGT 
CCACCCGGGA TGCCAGGATT TAAGGGACAC ACTGGACACA AAGGAGACAA AGGAGAGCCT 
GGAAAAAATG GGGAGAAGGG GGACCCTGGT CCACCAGGAC AACCGGGTAT TCCAGGAACT 
GTTGGTCTGC AGGGCCCGCG TGGTCTGAGA GGTCTACAAG GCCCAATGGG ACCTGCAGGG 
GACAGAGGCT TCCCAGGTTT CAGAGGCAAG CCTGGCCAAC CTGGAATCAT TGGAAAGCCA 
GGTGATGTCG GAGAAAAAGG ACCGCAGGGA TTTAAAGGAC CTAAAGGAGA GATTGGTAAA 
ATTGGTCCCA AAGGAGCCAC AGGCGGGGCA GGACCCAAAG GGGAGCCTGG TATGCCTGGA 
AGAGATGGGA AAGATGGAAC ACCAGGGTTG GATGGTGAGA AGGGTGATCC TGGACGCCAT 
GGAGTAGCTG GAGAGAAAGG ACCAAATGGA CTCCCTGGTT TACCTGGAAA AGCTGGAGAA 
AAGGGATCAA AAGGACAAGT TGGTGATGCA GGGAAGGCTG GGGAGCAAGG ACCTTCTGGA 
GAGCCAGGTA TTCCTGGTGA AATTGGCGTG CCAGGAAACA GGGGGAGAGC AGGTCCCAGA 
GGAGTGGCAG GAGGTATTGG ACCAGCAGGC GGTTCGGGGC CTCAGGGAGT AAAAGGCTTC 
CAGGGAGTCA AAGGAGCCTT GGGCGACCCA GGACTTCCAG GGCCAACAGG ACTCCGTGGA 
GAGTTTGGAG ACAGAGGTCC AGTTGGAGCT TCTGGAGAAA AGGGAGACAT GGGCGTGGCA 
GGAAGTGATG GTTTACCAGG AGAGAACGGA GAACCTGGTC CGTTTGGGCC AGTTGGACAA 
AAAGGAGAGC CAGGAAAGAG AGGGGAACTT GGGCCAAAAG GTGTGACAGG TCCACAAGGA 
GAGATTGGGG CAAGGGGACC ACCAGGAAAG CCAGGACCGA TGGGTTTCCA AGGGGAGCAG 
GGCGCGCCAG GAATTGCAGG AAAGACAGGT GTACCTGGGA AATTTGCAAG TGAGCAGCAC 
ATCAGAGAGC TGTGTGGTTC CATGATTGAT GGTCAGATTG CACAGCTTGC TGCCAACCTG 
CGGAGACCCC TGGCACCTGG AATGGTGGGC CGCCCTGGCC CTGCGGGTCT TCCAGGAAAG 
CCAGGGGTTG CTGGTTCTGT CGGACATCCA GGAACCCGTG GACCACCAGG ATACAGAGGC 
CTGCCAGGAG AACTGGGAGA TCCAGGTCCC AGAGGTGATG TTGGTGAGGC AGGTGATAAA 
GGACCAGTTG GTAAAGCTAT TGATGGACCT CCAGGAGATC AAGGATACCA AGGTCTTCCT 
GGAGTACCTG GATTTGCCAA AGATGGCCGT GATGGATCTC CAGGAGATCC AGGTGAGCCC 
GGCGAACCTG GCAGGACGGG TCGGACAGGG CATCAGGGTC CTCCTGGGAT CTGTGATACA 
TCAGCCTGCC AGGGAGCGTC ACCGGCGGAG AAATCCACAA ACCCCAAAAA CAATTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_015239055.1
CDS	196..2232
Translation	MTVLSALWVIFLCQLLSSSSAQRPGPRGPPGPQGPPGQPGRDGTDGKPGPPGLPGKAGPKGKAGIPGAPGKPGLPGLPGADGLTGPDGPAGKDGPPGETGDAGPPGPPGPPGRGRPGAPGLPGTNGLPGGIGPQGPPGPEGLPGLQGPTGPDGPPGLPGTLQDLTGDLLCPAICPPGPPGPPGMPGFKGHTGHKGDKGEPGKNGEKGDPGPPGQPGIPGTVGLQGPRGLRGLQGPMGPAGDRGFPGFRGKPGQPGIIGKPGDVGEKGPQGFKGPKGEIGKIGPKGATGGAGPKGEPGMPGRDGKDGTPGLDGEKGDPGRHGVAGEKGPNGLPGLPGKAGEKGSKGQVGDAGKAGEQGPSGEPGIPGEIGVPGNRGRAGPRGVAGGIGPAGGSGPQGVKGFQGVKGALGDPGLPGPTGLRGEFGDRGPVGASGEKGDMGVAGSDGLPGENGEPGPFGPVGQKGEPGKRGELGPKGVTGPQGEIGARGPPGKPGPMGFQGEQGAPGIAGKTGVPGKFASEQHIRELCGSMIDGQIAQLAANLRRPLAPGMVGRPGPAGLPGKPGVAGSVGHPGTRGPPGYRGLPGELGDPGPRGDVGEAGDKGPVGKAIDGPPGDQGYQGLPGVPGFAKDGRDGSPGDPGEPGEPGRTGRTGHQGPPGICDTSACQGASPAEKSTNPKNN

Target ORF information:

RefSeq Version	XM_015383569.1
Organism	Cyprinodon variegatus(sheepshead minnow)
Definition	Cyprinodon variegatus collagen, type IX, alpha 3 (col9a3), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_015383569.1

ORF Insert Sequence:

ATGACGGTGC TTTCTGCTCT TTGGGTGATC TTTCTGTGCC AGCTTCTGTC CTCATCTTCA 
GCCCAGCGGC CTGGCCCCAG AGGACCCCCT GGGCCACAAG GACCCCCAGG GCAACCAGGA 
AGGGATGGCA CTGATGGGAA ACCTGGACCT CCTGGGCTTC CAGGGAAAGC TGGCCCTAAA 
GGGAAAGCAG GAATACCAGG AGCACCAGGA AAACCCGGTC TACCAGGACT TCCAGGAGCT 
GATGGTTTGA CTGGCCCGGA TGGTCCTGCC GGCAAAGACG GACCCCCAGG GGAAACAGGT 
GACGCGGGCC CTCCCGGTCC ACCTGGACCT CCTGGCAGGG GGAGACCCGG CGCCCCAGGA 
TTACCTGGAA CCAATGGGTT GCCGGGCGGA ATAGGACCCC AGGGACCACC AGGTCCAGAG 
GGTCTTCCAG GACTTCAAGG ACCAACTGGA CCTGATGGAC CCCCGGGGCT TCCTGGTACC 
CTGCAAGATC TTACTGGTGA CCTTCTGTGT CCTGCTATCT GCCCTCCTGG TCCCCCTGGT 
CCACCCGGGA TGCCAGGATT TAAGGGACAC ACTGGACACA AAGGAGACAA AGGAGAGCCT 
GGAAAAAATG GGGAGAAGGG GGACCCTGGT CCACCAGGAC AACCGGGTAT TCCAGGAACT 
GTTGGTCTGC AGGGCCCGCG TGGTCTGAGA GGTCTACAAG GCCCAATGGG ACCTGCAGGG 
GACAGAGGCT TCCCAGGTTT CAGAGGCAAG CCTGGCCAAC CTGGAATCAT TGGAAAGCCA 
GGTGATGTCG GAGAAAAAGG ACCGCAGGGA TTTAAAGGAC CTAAAGGAGA GATTGGTAAA 
ATTGGTCCCA AAGGAGCCAC AGGCGGGGCA GGACCCAAAG GGGAGCCTGG TATGCCTGGA 
AGAGATGGGA AAGATGGAAC ACCAGGGTTG GATGGTGAGA AGGGTGATCC TGGACGCCAT 
GGAGTAGCTG GAGAGAAAGG ACCAAATGGA CTCCCTGGTT TACCTGGAAA AGCTGGAGAA 
AAGGGATCAA AAGGACAAGT TGGTGATGCA GGGAAGGCTG GGGAGCAAGG ACCTTCTGGA 
GAGCCAGGTA TTCCTGGTGA AATTGGCGTG CCAGGAAACA GGGGGAGAGC AGGTCCCAGA 
GGAGTGGCAG GAGGTATTGG ACCAGCAGGC GGTTCGGGGC CTCAGGGAGT AAAAGGCTTC 
CAGGGAGTCA AAGGAGCCTT GGGCGACCCA GGACTTCCAG GGCCAACAGG ACTCCGTGGA 
GAGTTTGGAG ACAGAGGTCC AGTTGGAGCT TCTGGAGAAA AGGGAGACAT GGGCGTGGCA 
GGAAGTGATG GTTTACCAGG AGAGAACGGA GAACCTGGTC CGTTTGGGCC AGTTGGACAA 
AAAGGAGAGC CAGGAAAGAG AGGGGAACTT GGGCCAAAAG GTGTGACAGG TCCACAAGGA 
GAGATTGGGG CAAGGGGACC ACCAGGAAAG CCAGGACCGA TGGGTTTCCA AGGGGAGCAG 
GGCGCGCCAG GAATTGCAGG AAAGACAGGT GTACCTGGGA AATTTGCAAG TGAGCAGCAC 
ATCAGAGAGC TGTGTGGTTC CATGATTGAT GGTCAGATTG CACAGCTTGC TGCCAACCTG 
CGGAGACCCC TGGCACCTGG AATGGTGGGC CGCCCTGGCC CTGCGGGTCT TCCAGGAAAG 
CCAGGGGTTG CTGGTTCTGT CGGACATCCA GGAACCCGTG GACCACCAGG ATACAGAGGC 
CTGCCAGGAG AACTGGGAGA TCCAGGTCCC AGAGGTGATG TTGGTGAGGC AGGTGATAAA 
GGACCAGTTG GTAAAGCTAT TGATGGACCT CCAGGAGATC AAGGATACCA AGGTCTTCCT 
GGAGTACCTG GATTTGCCAA AGATGGCCGT GATGGATCTC CAGGAGATCC AGGTGAGCCC 
GGCGAACCTG GCAGGACGGG TCGGACAGGG CATCAGGGTC CTCCTGGGAT CTGTGATACA 
TCAGCCTGCC AGGGAGCGTC ACCGGCGGAG AAATCCACAA ACCCCAAAAA CAATTAA