LOC542688 cDNA ORF clone, Zea mays

Gene
Clones
gRNAs

Summary

Gene Symbol	LOC542688
Entrez Gene ID	542688
Full Name	terpene synthase 6
Synonyms	GRMZM2G127087
Gene Type	protein-coding
Organism	Zea mays

mRNA and Protein(s)

mRNA	Protein	Name
NM_001112204.1	NP_001105674.1	(S)-beta-macrocarpene synthase

Pathways from BioSystems
Gene Ontology
Bibliography

Related articles in PubMed

The B73 maize genome: complexity, diversity, and dynamics.
Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, Strong C, Delehaunty K, Fronick C, Courtney B, Rock SM, Belter E, Du F, Kim K, Abbott RM, Cotton M, Levy A, Marchetto P, Ochoa K, Jackson SM, Gillam B, Chen W, Yan L, Higginbotham J, Cardenas M, Waligorski J, Applebaum E, Phelps L, Falcone J, Kanchi K, Thane T, Scimone A, Thane N, Henke J, Wang T, Ruppert J, Shah N, Rotter K, Hodges J, Ingenthron E, Cordes M, Kohlberg S, Sgro J, Delgado B, Mead K, Chinwalla A, Leonard S, Crouse K, Collura K, Kudrna D, Currie J, He R, Angelova A, Rajasekar S, Mueller T, Lomeli R, Scara G, Ko A, Delaney K, Wissotski M, Lopez G, Campos D, Braidotti M, Ashley E, Golser W, Kim H, Lee S, Lin J, Dujmic Z, Kim W, Talag J, Zuccolo A, Fan C, Sebastian A, Kramer M, Spiegel L, Nascimento L, Zutavern T, Miller B, Ambroise C, Muller S, Spooner W, Narechania A, Ren L, Wei S, Kumari S, Faga B, Levy MJ, McMahan L, Van Buren P, Vaughn MW, Ying K, Yeh CT, Emrich SJ, Jia Y, Kalyanaraman A, Hsia AP, Barbazuk WB, Baucom RS, Brutnell TP, Carpita NC, Chaparro C, Chia JM, Deragon JM, Estill JC, Fu Y, Jeddeloh JA, Han Y, Lee H, Li P, Lisch DR, Liu S, Liu Z, Nagel DH, McCann MC, SanMiguel P, Myers AM, Nettleton D, Nguyen J, Penning BW, Ponnala L, Schneider KL, Schwartz DC, Sharma A, Soderlund C, Springer NM, Sun Q, Wang H, Waterman M, Westerman R, Wolfgruber TK, Yang L, Yu Y, Zhang L, Zhou S, Zhu Q, Bennetzen JL, Dawe RK, Jiang J, Jiang N, Presting GG, Wessler SR, Aluru S, Martienssen RA, Clifton SW, McCombie WR, Wing RA, Wilson RK
Science (New York, N.Y.)326(5956)1112-5(2009 Nov)

Protonation of a neutral (S)-beta-bisabolene intermediate is involved in (S)-beta-macrocarpene formation by the maize sesquiterpene synthases TPS6 and TPS11.
K?llner TG, Schnee C, Li S, Svatos A, Schneider B, Gershenzon J, Degenhardt J
The Journal of biological chemistry283(30)20779-88(2008 Jul)

Dissecting defense-related and developmental transcriptional responses of maize during Ustilago maydis infection and subsequent tumor formation.
Basse CW
Plant physiology138(3)1774-84(2005 Jul)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

Protonation of a neutral (S)-beta-bisabolene intermediate is involved in (S)-beta-macrocarpene formation by the maize sesquiterpene synthases TPS6 and TPS11
Title: Protonation of a neutral (S)-beta-bisabolene intermediate is involved in (S)-beta-macrocarpene formation by the maize sesquiterpene synthases TPS6 and TPS11.

The following LOC542688 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC542688 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OZa04410	NM_001112204.1 Latest version!	Zea mays terpene synthase 6 (LOC542688), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$342.30 $489.00

ORF Online Only Promotion

Next-day Shipping ORF Clones ( in default vector with tag)
1 Clone	30% OFF
2-4 Clone	40% OFF
5 or more Clone	50% OFF
All Other ORF Clones
30% OFF

*Business Day

** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

LOC542688 ( NM_001112204.1 ) cDNA ORF clone, Zea mays -> NP_001105674.1 Zea mays terpene synthase 6 (LOC542688), mRNA.

Price & Availability↑

CloneID	OZa04410
Clone ID Related Accession (Same CDS sequence)	NM_001112204.1
Accession Version	NM_001112204.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 1647bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-07-13
Organism	Zea mays
Product	(S)-beta-macrocarpene synthase
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY518315.1. ##Evidence-Data-START## Transcript exon combination :: AY518315.1, AY647253.2 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMN00780086, SAMN00780135 [ECO:0000350] ##Evidence-Data-END##

ATGGCTGCCC CAACACTAAC TGCAGATGGT CCTCGCCTCG GCCAGCAGGA GATGAAGAAG 
ATGTCTCCCT CCTTCCATCC AACTCTGTGG GGAGATTTCT TTCTTTCTTA CGAGGCTCCG 
ACCGAGGCAC AGGAAGCTCA AATGAGAGAA AAGGCTGCAG TGCTAAAGGA AGAAGTGAGA 
AACATGATTA AAGGTTCACA TGATGTGCCA GAAATAGTGG ACCTTATTAT CACCCTGCAG 
CGACTAAATC TGGACTACCA CTACGAGGAT GAGATAAATG AAAAGTTGAC TGTTGTTTAC 
AAATCCAATT ATGATGGTGG TAATTTGGAC TTAGTTTCAC GTCGATTCTA TCTTCTGCGT 
AAATGTGGCT ACGATGTTTC ATCTGATGTA TTCCTAAAAT TCAAAGACCA ACTTGGGAAT 
TTTGTTGAGG CTGATACCAG GAGCTTGTTA AGCTTATACA ATGCAGCATT CCTGAGGATT 
CATGGAGAGA CAGTGCTTGA CGAGGCAATT TCTTTTACTA TGAGAGTTCT TCAAGATAGA 
TTAGAACATT TGGAATCGCC ATTAGCAGAG GAAGTGTCTT CTGCTCTTGA CACACCACTT 
TTTCGAAGGG TTGGAACTTT GGAAATGAAG GATTACATTC CTATCTACGA AAAGGACGCT 
AAACAAAATA AATCAATATT AGAGTTTGCG AAACTAAACT TCAACCTTTT ACAACTTCGT 
TATTCATCAG AGCTAAAAGA GTGCACAACC TGGTGGAAAG AACTTCGCGT CGAATCAAAC 
TTGAGTTTCG TCAGGGATAG GATAGTAGAG GTGTACTTTT GGATGAGTGG GGGATGCTAT 
GATCCTCAAT ATTCTCATTC TCGAATTATA CTTACAAAGA TAGTTGCTTT CATCACGATT 
CTAGATGATA CCCTTGACTC ACATGCTACT TCTTGTGAGA GTATGCAACT TGCAGAAGCA 
ATCGAAAGGT GGGATGAAAG TGCAGTCTCT CTACTCCCAG AATACATGAA GGATTTCTAC 
ATGTATTTGT TGAAGACATT TTCATCGTTT GAGAATGAGT TAGGACCAGA CAAGAGCTAC 
CGAGTGTTCT ACTTAAAAGA AGCGGTGAAG GAATTAGTTC GGGAATATAC CAAGGAAATA 
AAATGGCGTG ATGAGGATTA TGTGCCCAAA ACATTGAAAG AGCACCTTAA AGTTTCACTC 
ATAAGCATTG GAGGCACTCT GGTGCTATGT TCTGCGTTTG TTGGAATGGG TGATGTAGTA 
ACAAAGAAGA TCATGAAATG GGTTATGAGT GATGCTGAAC TTGTTAAGTC TTTTGGTATA 
TTTGTACGGC TCTCCAATGA TATTGTATCA ACCAAGCGTG AACAAAGAGA GAAGCATTGT 
GTCTCCACTG TTCAGTGTTA CATGAAGCAG CATGAAATAA CAATGGATGA AGCGTGTGAG 
CAGATAAAAG AACTTACAGA AGATTCATGG AAGTTCATGA TTGAACAAGG CCTTGCACTA 
AAAGAATACC CGATAATTGT GCCACGAACG GTACTAGAGT TTGCACGAAC TGTAGACTAC 
ATGTACAAGG AAGCTGATAA GTACACTGTC TCACATACAA TCAAAGACAT GTTAACGTCG 
CTTTATGTGA AGCCGGTACT CATGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001105674.1
CDS	1..1647
Translation	MAAPTLTADGPRLGQQEMKKMSPSFHPTLWGDFFLSYEAPTEAQEAQMREKAAVLKEEVRNMIKGSHDVPEIVDLIITLQRLNLDYHYEDEINEKLTVVYKSNYDGGNLDLVSRRFYLLRKCGYDVSSDVFLKFKDQLGNFVEADTRSLLSLYNAAFLRIHGETVLDEAISFTMRVLQDRLEHLESPLAEEVSSALDTPLFRRVGTLEMKDYIPIYEKDAKQNKSILEFAKLNFNLLQLRYSSELKECTTWWKELRVESNLSFVRDRIVEVYFWMSGGCYDPQYSHSRIILTKIVAFITILDDTLDSHATSCESMQLAEAIERWDESAVSLLPEYMKDFYMYLLKTFSSFENELGPDKSYRVFYLKEAVKELVREYTKEIKWRDEDYVPKTLKEHLKVSLISIGGTLVLCSAFVGMGDVVTKKIMKWVMSDAELVKSFGIFVRLSNDIVSTKREQREKHCVSTVQCYMKQHEITMDEACEQIKELTEDSWKFMIEQGLALKEYPIIVPRTVLEFARTVDYMYKEADKYTVSHTIKDMLTSLYVKPVLM

Target ORF information:

RefSeq Version	NM_001112204.1
Organism	Zea mays
Definition	Zea mays terpene synthase 6 (LOC542688), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001112204.1

ORF Insert Sequence:

ATGGCTGCCC CAACACTAAC TGCAGATGGT CCTCGCCTCG GCCAGCAGGA GATGAAGAAG 
ATGTCTCCCT CCTTCCATCC AACTCTGTGG GGAGATTTCT TTCTTTCTTA CGAGGCTCCG 
ACCGAGGCAC AGGAAGCTCA AATGAGAGAA AAGGCTGCAG TGCTAAAGGA AGAAGTGAGA 
AACATGATTA AAGGTTCACA TGATGTGCCA GAAATAGTGG ACCTTATTAT CACCCTGCAG 
CGACTAAATC TGGACTACCA CTACGAGGAT GAGATAAATG AAAAGTTGAC TGTTGTTTAC 
AAATCCAATT ATGATGGTGG TAATTTGGAC TTAGTTTCAC GTCGATTCTA TCTTCTGCGT 
AAATGTGGCT ACGATGTTTC ATCTGATGTA TTCCTAAAAT TCAAAGACCA ACTTGGGAAT 
TTTGTTGAGG CTGATACCAG GAGCTTGTTA AGCTTATACA ATGCAGCATT CCTGAGGATT 
CATGGAGAGA CAGTGCTTGA CGAGGCAATT TCTTTTACTA TGAGAGTTCT TCAAGATAGA 
TTAGAACATT TGGAATCGCC ATTAGCAGAG GAAGTGTCTT CTGCTCTTGA CACACCACTT 
TTTCGAAGGG TTGGAACTTT GGAAATGAAG GATTACATTC CTATCTACGA AAAGGACGCT 
AAACAAAATA AATCAATATT AGAGTTTGCG AAACTAAACT TCAACCTTTT ACAACTTCGT 
TATTCATCAG AGCTAAAAGA GTGCACAACC TGGTGGAAAG AACTTCGCGT CGAATCAAAC 
TTGAGTTTCG TCAGGGATAG GATAGTAGAG GTGTACTTTT GGATGAGTGG GGGATGCTAT 
GATCCTCAAT ATTCTCATTC TCGAATTATA CTTACAAAGA TAGTTGCTTT CATCACGATT 
CTAGATGATA CCCTTGACTC ACATGCTACT TCTTGTGAGA GTATGCAACT TGCAGAAGCA 
ATCGAAAGGT GGGATGAAAG TGCAGTCTCT CTACTCCCAG AATACATGAA GGATTTCTAC 
ATGTATTTGT TGAAGACATT TTCATCGTTT GAGAATGAGT TAGGACCAGA CAAGAGCTAC 
CGAGTGTTCT ACTTAAAAGA AGCGGTGAAG GAATTAGTTC GGGAATATAC CAAGGAAATA 
AAATGGCGTG ATGAGGATTA TGTGCCCAAA ACATTGAAAG AGCACCTTAA AGTTTCACTC 
ATAAGCATTG GAGGCACTCT GGTGCTATGT TCTGCGTTTG TTGGAATGGG TGATGTAGTA 
ACAAAGAAGA TCATGAAATG GGTTATGAGT GATGCTGAAC TTGTTAAGTC TTTTGGTATA 
TTTGTACGGC TCTCCAATGA TATTGTATCA ACCAAGCGTG AACAAAGAGA GAAGCATTGT 
GTCTCCACTG TTCAGTGTTA CATGAAGCAG CATGAAATAA CAATGGATGA AGCGTGTGAG 
CAGATAAAAG AACTTACAGA AGATTCATGG AAGTTCATGA TTGAACAAGG CCTTGCACTA 
AAAGAATACC CGATAATTGT GCCACGAACG GTACTAGAGT TTGCACGAAC TGTAGACTAC 
ATGTACAAGG AAGCTGATAA GTACACTGTC TCACATACAA TCAAAGACAT GTTAACGTCG 
CTTTATGTGA AGCCGGTACT CATGTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

The B73 maize genome: complexity, diversity, and dynamics.
Science (New York, N.Y.)326(5956)1112-5(2009 Nov)
Schnable PS,Ware D,Fulton RS,Stein JC,Wei F,Pasternak S,Liang C,Zhang J,Fulton L,Graves TA,Minx P,Reily AD,Courtney L,Kruchowski SS,Tomlinson C,Strong C,Delehaunty K,Fronick C,Courtney B,Rock SM,Belter E,Du F,Kim K,Abbott RM,Cotton M,Levy A,Marchetto P,Ochoa K,Jackson SM,Gillam B,Chen W,Yan L,Higginbotham J,Cardenas M,Waligorski J,Applebaum E,Phelps L,Falcone J,Kanchi K,Thane T,Scimone A,Thane N,Henke J,Wang T,Ruppert J,Shah N,Rotter K,Hodges J,Ingenthron E,Cordes M,Kohlberg S,Sgro J,Delgado B,Mead K,Chinwalla A,Leonard S,Crouse K,Collura K,Kudrna D,Currie J,He R,Angelova A,Rajasekar S,Mueller T,Lomeli R,Scara G,Ko A,Delaney K,Wissotski M,Lopez G,Campos D,Braidotti M,Ashley E,Golser W,Kim H,Lee S,Lin J,Dujmic Z,Kim W,Talag J,Zuccolo A,Fan C,Sebastian A,Kramer M,Spiegel L,Nascimento L,Zutavern T,Miller B,Ambroise C,Muller S,Spooner W,Narechania A,Ren L,Wei S,Kumari S,Faga B,Levy MJ,McMahan L,Van Buren P,Vaughn MW,Ying K,Yeh CT,Emrich SJ,Jia Y,Kalyanaraman A,Hsia AP,Barbazuk WB,Baucom RS,Brutnell TP,Carpita NC,Chaparro C,Chia JM,Deragon JM,Estill JC,Fu Y,Jeddeloh JA,Han Y,Lee H,Li P,Lisch DR,Liu S,Liu Z,Nagel DH,McCann MC,SanMiguel P,Myers AM,Nettleton D,Nguyen J,Penning BW,Ponnala L,Schneider KL,Schwartz DC,Sharma A,Soderlund C,Springer NM,Sun Q,Wang H,Waterman M,Westerman R,Wolfgruber TK,Yang L,Yu Y,Zhang L,Zhou S,Zhu Q,Bennetzen JL,Dawe RK,Jiang J,Jiang N,Presting GG,Wessler SR,Aluru S,Martienssen RA,Clifton SW,McCombie WR,Wing RA,Wilson RK

Protonation of a neutral (S)-beta-bisabolene intermediate is involved in (S)-beta-macrocarpene formation by the maize sesquiterpene synthases TPS6 and TPS11.
The Journal of biological chemistry283(30)20779-88(2008 Jul)
K?llner TG,Schnee C,Li S,Svatos A,Schneider B,Gershenzon J,Degenhardt J

Dissecting defense-related and developmental transcriptional responses of maize during Ustilago maydis infection and subsequent tumor formation.
Plant physiology138(3)1774-84(2005 Jul)
Basse CW