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tbc1d16 cDNA ORF clone, Danio rerio(zebrafish)

Summary

Gene Symbol tbc1d16
Entrez Gene ID 450056
Full Name TBC1 domain family, member 16
Synonyms fi28h02,wu:fi28h02,zgc:101681
General protein information
Preferred Names

TBC1 domain family, member 16

Names

TBC1 domain family member 16
CG11490-like
Gene Type protein-coding
Organism Danio rerio(zebrafish)

Reference Sequences (RefSeq)

mRNA and Protein(s)

mRNA Protein Name
NM_001006076.2 NP_001006076.2 TBC1 domain family member 16

Pathways from BioSystems


Homologies


Rattus norvegicus (Norway rat) Tbc1d16 XP_006248000.1
Gallus gallus (chicken) TBC1D16 XP_004946341.1
Caenorhabditis elegans (roundworm) tbc-16 NP_508988.3
Drosophila melanogaster (fruit fly) CG5337 NP_609403.2
Anopheles gambiae (African malaria mosquito) AgaP_AGAP011218 XP_309426.4
TBC1D16 XP_001109890.1
Homo sapiens (human) TBC1D16 NP_061893.2
Canis lupus familiaris (dog) TBC1D16 XP_540469.3
Bos taurus (cattle) TBC1D16 NP_001193200.1
Mus musculus (house mouse) Tbc1d16 NP_766031.2
Pan troglodytes (chimpanzee) TBC1D16 XP_001159856.1
Danio rerio (zebrafish) tbc1d16 NP_001006076.2
Xenopus tropicalis (tropical clawed frog) tbc1d16 NP_001004861.1

Gene Ontology


Bibliography

Related articles in PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following tbc1d16 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the tbc1d16 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
ODa33176 NM_001006076.2
Latest version!		 Danio rerio TBC1 domain family, member 16 (tbc1d16), mRNA. pcDNA3.1+/C-(K)DYK or customized vector 12-14 $426.30
$609.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)


CloneID ODa33176
Clone ID Related Accession (Same CDS sequence) NM_001006076.2
Accession Version NM_001006076.2 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 2154bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2018-11-23
Organism Danio rerio(zebrafish)
Product TBC1 domain family member 16
Comment Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CR392027.16 and CU464122.9. On or before Jan 14, 2012 this sequence version replaced XM_003198086.1, NM_001006076.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: GFIL01040444.1, GDQH01002800.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## 

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801
1861
1921
1981
2041
2101
ATGTCATTCG GTCGACTCCT GCGACGTGCA TCCTCCAAAG CCTCTGACTT TTTGACGTTT 
AACGTGGGCA CAGGGGGTTC CCGGAGCGTG CTGGATGGAG AGATCATCTT CTCCAAGAAC 
AATGTGTGTG TGCATCCTGC CGAACCCCTG CCTGGACTGC CTGAACATCA CCCAGGTTAT 
CTGTGCGTGC ACCTGGAGAA AGACGAGACC CTTGGCTCCA CACTTATCCT CACCTGGGTG 
CCTAACTCTC GCATCCAGCG GCAAGACGAG GAGGCCCTAC GCTACATCAC GCCTGAAAGC 
TCGCCCGTCC GCAGAAATCC CCGCCGCCGA GCCCACCGGA GCCACTCTCG CCCGCCAGCC 
GCCCCTGAGG AGGAAGAGGC TGCTGATGAA GAGGGCCAGG AGCCGCAGAA CCAGGCGCTG 
CTGGAAGAAG GAGACGAAGG CTCATGTGAG CTCTCTGCAG ATGAGGTGAG CCGGGACAGC 
ACCATTGGCT CCGATTCGGA CACCTTCTCT TCACCGTTCT GCCTATCGCC GGTCAGCGAG 
GCTCTGGGCG AAAGCAGCAG CTCCGTCTTC CTGGACAATG AGAGCAGGGA ATGCGATGAA 
CCAATGGCTC ACTCTGCAAG CTCTGCCTCC AGCCTGGACA GCCACGCCCC TTCAGAAAGC 
AGTCATTCAC AGGGAGTCCG CTGGGAGGAG CAGCAGAATG TCATGGCATT AGAGCACCTG 
TGTGGCGTGT TCAGAGTTGA CCTGGGTCAC ATGAGGTCAC TCCGGCTCTT TTTCAGTGAT 
GAGGCCTGCA CCTGTGGGCA GCTGGTCATC GCCAGCAGAG AGAGCCAGTA CAAGATCCTT 
CACTTCCACC ACGCAGGCCT GGATAAACTG GCTGAGGTGT TTCAGCAGTG GAAATGCTGC 
AGGGAGACTC AGCTCAAAGA CCAGGTGTCA GATGAGAAGT CCTGTATGCA GTTTTCCATC 
CGTCGACCCA CACTACCGTC TGCCGAGATG CACCCCGAGG AGCGTCTGTA CCGCCGGCTG 
GACGTCAGCT CTTGGCTCCG GCATCTGAAC AACAGCGGCC AGGTGCTGGA GGAGTACAAG 
CTTAGAAAGG CAATCTTCTT CGGAGGCATC GATCCGTCCA TCCGTGGTGA AGTCTGGCCG 
TTTCTCCTTC ACTACTACAG CTATGATTCC ACATCTGAGG AGCGCGAGGC CTGGAGACTG 
CAGAAACGCG GGGAGTACCA GGACATCCAG CAGAGGAGGT TGTCCATGAG TCCAGAAGAG 
CACAGTGAGT TCTGGAGGAA GGTCCAGTTC ACGGTGGATA AAGATGTTGT CAGGACGGAC 
CGAAGCAACA TGTTTTTTAG AGGAGAAAAC AACCCCAATG TAGAAATCAT GAGGCGTATC 
CTGTTGAACT ATGCGGTGTT TAACCCAGAC ATGGGCTACT GTCAGGGCAT GTCCGACCTG 
GTGGCTCCTC TGCTGACTGA GATCCAGGAC GAGAGCGACA CGTTCTGGTG TTTCGTGGGT 
CTGATGGAGA ACACCATCTT CATCAGCTCT CCGAGAGACG AGGATATGGA GAGACAGCTG 
ATGTACCTGC GGGAGCTCCT GCGGCTCATG CTGCCCCGGT TTCACCAGCA TCTGACCCGG 
CTGGGTGAGG ATGGCCTTCA GCTGCTGTTC TGCCACCGCT GGGTCTTGCT GTGCTTCAAA 
CGAGAGTTTC CGGACGCTGA AGCTCTGCGC ATGTGGGAAG CCTGCTGGGC ACACTATCAG 
ACGGACTACT TTCACCTGTT CCTGTGCGTT GCCATCATTG TGCTGTACGG CGATGATGTC 
ACAGAGCAGC AGCTTGCCAC AGATCAAATG CTGCTGCACT TCAGTAACCT CTCCATGCAC 
ATGAATGGAG AGCTGGTGCT GAGGAAGGCA CGTAGTCTTC TGTATCAATT CCGCCTTCTT 
CCCAGAATCC CCTGCAGCTT ACATGACCTG TGTAAACTCT GCGGACCTGG AATGTGGGAC 
AGCCGCTACA TCCCTGCCAT AGAATGTTCC GGGGAGCATC CAGACTCTCA GAGCTGCCCC 
TATGGAGGCA CTGCCACCCC CGAAAGCCCG CCCTTACCCA GCCCCAACCA GCCCATCGAG 
GGCAAGCGGG GCTCCAAGAA ACGGGACATT TTCACCTTCC GCAAGCACTC CTGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq NP_001006076.2
CDS127..2280
Translation

Target ORF information:

RefSeq Version NM_001006076.2
Organism Danio rerio(zebrafish)
Definition Danio rerio TBC1 domain family, member 16 (tbc1d16), mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 NM_001006076.2

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801
1861
1921
1981
2041
2101
ATGTCATTCG GTCGACTCCT GCGACGTGCA TCCTCCAAAG CCTCTGACTT TTTGACGTTT 
AACGTGGGCA CAGGGGGTTC CCGGAGCGTG CTGGATGGAG AGATCATCTT CTCCAAGAAC 
AATGTGTGTG TGCATCCTGC CGAACCCCTG CCTGGACTGC CTGAACATCA CCCAGGTTAT 
CTGTGCGTGC ACCTGGAGAA AGACGAGACC CTTGGCTCCA CACTTATCCT CACCTGGGTG 
CCTAACTCTC GCATCCAGCG GCAAGACGAG GAGGCCCTAC GCTACATCAC GCCTGAAAGC 
TCGCCCGTCC GCAGAAATCC CCGCCGCCGA GCCCACCGGA GCCACTCTCG CCCGCCAGCC 
GCCCCTGAGG AGGAAGAGGC TGCTGATGAA GAGGGCCAGG AGCCGCAGAA CCAGGCGCTG 
CTGGAAGAAG GAGACGAAGG CTCATGTGAG CTCTCTGCAG ATGAGGTGAG CCGGGACAGC 
ACCATTGGCT CCGATTCGGA CACCTTCTCT TCACCGTTCT GCCTATCGCC GGTCAGCGAG 
GCTCTGGGCG AAAGCAGCAG CTCCGTCTTC CTGGACAATG AGAGCAGGGA ATGCGATGAA 
CCAATGGCTC ACTCTGCAAG CTCTGCCTCC AGCCTGGACA GCCACGCCCC TTCAGAAAGC 
AGTCATTCAC AGGGAGTCCG CTGGGAGGAG CAGCAGAATG TCATGGCATT AGAGCACCTG 
TGTGGCGTGT TCAGAGTTGA CCTGGGTCAC ATGAGGTCAC TCCGGCTCTT TTTCAGTGAT 
GAGGCCTGCA CCTGTGGGCA GCTGGTCATC GCCAGCAGAG AGAGCCAGTA CAAGATCCTT 
CACTTCCACC ACGCAGGCCT GGATAAACTG GCTGAGGTGT TTCAGCAGTG GAAATGCTGC 
AGGGAGACTC AGCTCAAAGA CCAGGTGTCA GATGAGAAGT CCTGTATGCA GTTTTCCATC 
CGTCGACCCA CACTACCGTC TGCCGAGATG CACCCCGAGG AGCGTCTGTA CCGCCGGCTG 
GACGTCAGCT CTTGGCTCCG GCATCTGAAC AACAGCGGCC AGGTGCTGGA GGAGTACAAG 
CTTAGAAAGG CAATCTTCTT CGGAGGCATC GATCCGTCCA TCCGTGGTGA AGTCTGGCCG 
TTTCTCCTTC ACTACTACAG CTATGATTCC ACATCTGAGG AGCGCGAGGC CTGGAGACTG 
CAGAAACGCG GGGAGTACCA GGACATCCAG CAGAGGAGGT TGTCCATGAG TCCAGAAGAG 
CACAGTGAGT TCTGGAGGAA GGTCCAGTTC ACGGTGGATA AAGATGTTGT CAGGACGGAC 
CGAAGCAACA TGTTTTTTAG AGGAGAAAAC AACCCCAATG TAGAAATCAT GAGGCGTATC 
CTGTTGAACT ATGCGGTGTT TAACCCAGAC ATGGGCTACT GTCAGGGCAT GTCCGACCTG 
GTGGCTCCTC TGCTGACTGA GATCCAGGAC GAGAGCGACA CGTTCTGGTG TTTCGTGGGT 
CTGATGGAGA ACACCATCTT CATCAGCTCT CCGAGAGACG AGGATATGGA GAGACAGCTG 
ATGTACCTGC GGGAGCTCCT GCGGCTCATG CTGCCCCGGT TTCACCAGCA TCTGACCCGG 
CTGGGTGAGG ATGGCCTTCA GCTGCTGTTC TGCCACCGCT GGGTCTTGCT GTGCTTCAAA 
CGAGAGTTTC CGGACGCTGA AGCTCTGCGC ATGTGGGAAG CCTGCTGGGC ACACTATCAG 
ACGGACTACT TTCACCTGTT CCTGTGCGTT GCCATCATTG TGCTGTACGG CGATGATGTC 
ACAGAGCAGC AGCTTGCCAC AGATCAAATG CTGCTGCACT TCAGTAACCT CTCCATGCAC 
ATGAATGGAG AGCTGGTGCT GAGGAAGGCA CGTAGTCTTC TGTATCAATT CCGCCTTCTT 
CCCAGAATCC CCTGCAGCTT ACATGACCTG TGTAAACTCT GCGGACCTGG AATGTGGGAC 
AGCCGCTACA TCCCTGCCAT AGAATGTTCC GGGGAGCATC CAGACTCTCA GAGCTGCCCC 
TATGGAGGCA CTGCCACCCC CGAAAGCCCG CCCTTACCCA GCCCCAACCA GCCCATCGAG 
GGCAAGCGGG GCTCCAAGAA ACGGGACATT TTCACCTTCC GCAAGCACTC CTGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

PubMed

book

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J


book

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R