barhl1b cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	barhl1b
Entrez Gene ID	553186
Full Name	BarH-like homeobox 1b
Synonyms	BarH2,barhl1,barhl1.1
General protein information	Preferred Names BarH-like homeobox 1b Names barH-like 1 homeobox protein BarH-class homeodomain transcription factor BarH-like 1 BarH-like 1.1 BarH-like 1b
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001018132.1	NP_001018142.1	barH-like 1 homeobox protein

Pathways from BioSystems

Homologies

Mus musculus (house mouse)	Barhl1	NP_062319.1
Rattus norvegicus (Norway rat)	Barhl1	NP_476450.1
Homo sapiens (human)	BARHL1	NP_064448.1
Xenopus tropicalis (tropical clawed frog)	barhl1	XP_002936232.1
Canis lupus familiaris (dog)	BARHL1	XP_548404.3
Danio rerio (zebrafish)	barhl1b	NP_001018142.1
Pan troglodytes (chimpanzee)	BARHL1	XP_001168385.1
	LOC722313	XP_001118474.1
Bos taurus (cattle)	BARHL1	NP_001193177.1
Gallus gallus (chicken)	BARHL1	XP_427153.3

Gene Ontology
Bibliography

Related articles in PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

mafba is a downstream transcriptional effector of Vegfc signaling essential for embryonic lymphangiogenesis in zebrafish.
Koltowska K, Paterson S, Bower NI, Baillie GJ, Lagendijk AK, Astin JW, Chen H, Francois M, Crosier PS, Taft RJ, Simons C, Smith KA, Hogan BM
Genes & development29(15)1618-30(2015 Aug)

Evolutionary relationships and diversification of barhl genes within retinal cell lineages.
Schuhmacher LN, Albadri S, Ramialison M, Poggi L
BMC evolutionary biology11340(2011 Nov)

Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention.
Hufton AL, Mathia S, Braun H, Georgi U, Lehrach H, Vingron M, Poustka AJ, Panopoulou G
Genome research19(11)2036-51(2009 Nov)

Anatomy of zebrafish cerebellum and screen for mutations affecting its development.
Bae YK, Kani S, Shimizu T, Tanabe K, Nojima H, Kimura Y, Higashijima S, Hibi M
Developmental biology330(2)406-26(2009 Jun)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following barhl1b gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the barhl1b cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa02971	NM_001018132.1 Latest version!	Danio rerio BarH-like homeobox 1b (barhl1b), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$174.30 $249.00

ORF Online Only Promotion

Next-day Shipping ORF Clones ( in default vector with tag)
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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

barhl1b ( NM_001018132.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001018142.1 Danio rerio BarH-like homeobox 1b (barhl1b), mRNA.

Price & Availability↑

CloneID	ODa02971
Clone ID Related Accession (Same CDS sequence)	NM_001018132.1
Accession Version	NM_001018132.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 972bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-08-05
Organism	Danio rerio(zebrafish)
Product	barH-like 1 homeobox protein
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY596176.1. On Sep 21, 2011 this sequence version replaced XM_677740.5. ##Evidence-Data-START## Transcript exon combination :: AY596176.1, BC162083.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA3505372, SAMEA3505374 [ECO:0000348] ##Evidence-Data-END##

ATGGAAGCGT CCACCAACGG CTCCAGTTTT GGAATCGACT CCCTGCTGTC CCACAGGCCC 
GGAAGCCCAG TCATCTCGAA AGGGGACAGC TTGGTTGGGG AATGCCGGTC CCCGCTGGAG 
TTCAGTCCCA GGTCAGACTT AGAGAGCGGT TGTTCTTCTC CTCCGTCCCC GAGGCGGGAG 
TGCGTTGAGG ATGCGGCGCA GAGACAGGGT CACCCGCTCG CTTACGCGTC CCATTTGCAA 
CACGGGCCGA TCTCCGCTGG ATCGCAACCT CGGACTGTCG CTTCATCCTT TTTAATAAGA 
GACATTCTTG CTGACTGTAA ACCTTTAGCG GCGTGCGCTC CTTATTCCAG CAACGGCCAG 
CCGACACAGG AGGCAGGGAG ACTGGCATCT AAAATCGCAG ACGACTTAAT AGAAAAGATC 
CACAGTAACT CATCGTCAGA CAGTGAATAC AAAGTAAAAG AGGAGGGCGA CAGGGAGATC 
TCGAGCAGCA GAGACAGCCC GCAGGTTCGC CTGAAGAAGC CACGGAAAGC GCGGACCGCC 
TTCACTGACC ATCAGCTCGC CCAGCTGGAG CGCAGTTTTG AGCGTCAGAA GTACCTGAGC 
GTGCAGGACA GGATGGAGCT GGCAGCATCT CTCAACCTGA CCGACACGCA GGTCAAAACC 
TGGTACCAGA ACAGGAGGAC TAAGTGGAAG AGGCAAACGG CGGTCGGACT GGAATTGTTA 
GCGGAGGCTG GAAATTACTC TGCGCTGCAA AGGATGTTCC CTTCGCCGTA TTTCTACCCT 
CAAAGCCTGG TGTCGAATCT GGACCCTGGA GCAGCGCTCT ACTTATACAG GGGACCTTCG 
GCGCCCCCGC CGGCGCTGCA GCGTCCTCTT GTTCCCCGGA TTCTCCTGCA TGGTCTCCAG 
GGCGCCAGCG AGCCGCCGCC GCCTCTGCCT CCCCTCTCCG GCGTGTTGCC CAGACCGACA 
CCACCGCGAT GA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001018142.1
CDS	97..1068
Translation	MEASTNGSSFGIDSLLSHRPGSPVISKGDSLVGECRSPLEFSPRSDLESGCSSPPSPRRECVEDAAQRQGHPLAYASHLQHGPISAGSQPRTVASSFLIRDILADCKPLAACAPYSSNGQPTQEAGRLASKIADDLIEKIHSNSSSDSEYKVKEEGDREISSSRDSPQVRLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYFYPQSLVSNLDPGAALYLYRGPSAPPPALQRPLVPRILLHGLQGASEPPPPLPPLSGVLPRPTPPR

Target ORF information:

RefSeq Version	NM_001018132.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio BarH-like homeobox 1b (barhl1b), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001018132.1

ORF Insert Sequence:

ATGGAAGCGT CCACCAACGG CTCCAGTTTT GGAATCGACT CCCTGCTGTC CCACAGGCCC 
GGAAGCCCAG TCATCTCGAA AGGGGACAGC TTGGTTGGGG AATGCCGGTC CCCGCTGGAG 
TTCAGTCCCA GGTCAGACTT AGAGAGCGGT TGTTCTTCTC CTCCGTCCCC GAGGCGGGAG 
TGCGTTGAGG ATGCGGCGCA GAGACAGGGT CACCCGCTCG CTTACGCGTC CCATTTGCAA 
CACGGGCCGA TCTCCGCTGG ATCGCAACCT CGGACTGTCG CTTCATCCTT TTTAATAAGA 
GACATTCTTG CTGACTGTAA ACCTTTAGCG GCGTGCGCTC CTTATTCCAG CAACGGCCAG 
CCGACACAGG AGGCAGGGAG ACTGGCATCT AAAATCGCAG ACGACTTAAT AGAAAAGATC 
CACAGTAACT CATCGTCAGA CAGTGAATAC AAAGTAAAAG AGGAGGGCGA CAGGGAGATC 
TCGAGCAGCA GAGACAGCCC GCAGGTTCGC CTGAAGAAGC CACGGAAAGC GCGGACCGCC 
TTCACTGACC ATCAGCTCGC CCAGCTGGAG CGCAGTTTTG AGCGTCAGAA GTACCTGAGC 
GTGCAGGACA GGATGGAGCT GGCAGCATCT CTCAACCTGA CCGACACGCA GGTCAAAACC 
TGGTACCAGA ACAGGAGGAC TAAGTGGAAG AGGCAAACGG CGGTCGGACT GGAATTGTTA 
GCGGAGGCTG GAAATTACTC TGCGCTGCAA AGGATGTTCC CTTCGCCGTA TTTCTACCCT 
CAAAGCCTGG TGTCGAATCT GGACCCTGGA GCAGCGCTCT ACTTATACAG GGGACCTTCG 
GCGCCCCCGC CGGCGCTGCA GCGTCCTCTT GTTCCCCGGA TTCTCCTGCA TGGTCTCCAG 
GGCGCCAGCG AGCCGCCGCC GCCTCTGCCT CCCCTCTCCG GCGTGTTGCC CAGACCGACA 
CCACCGCGAT GA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

mafba is a downstream transcriptional effector of Vegfc signaling essential for embryonic lymphangiogenesis in zebrafish.
Genes & development29(15)1618-30(2015 Aug)
Koltowska K,Paterson S,Bower NI,Baillie GJ,Lagendijk AK,Astin JW,Chen H,Francois M,Crosier PS,Taft RJ,Simons C,Smith KA,Hogan BM

Evolutionary relationships and diversification of barhl genes within retinal cell lineages.
BMC evolutionary biology11340(2011 Nov)
Schuhmacher LN,Albadri S,Ramialison M,Poggi L

Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention.
Genome research19(11)2036-51(2009 Nov)
Hufton AL,Mathia S,Braun H,Georgi U,Lehrach H,Vingron M,Poustka AJ,Panopoulou G

Anatomy of zebrafish cerebellum and screen for mutations affecting its development.
Developmental biology330(2)406-26(2009 Jun)
Bae YK,Kani S,Shimizu T,Tanabe K,Nojima H,Kimura Y,Higashijima S,Hibi M

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barhl1b cDNA ORF clone, Danio rerio(zebrafish)

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Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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