Gene Symbol | DNMT3B |
Entrez Gene ID | 419287 |
Full Name | DNA methyltransferase 3 beta |
General protein information |
|
Gene Type | protein-coding |
Organism | Gallus gallus(chicken) |
ORF » Species Summary » Gallus gallus » DNMT3B cDNA ORF clone
Gene Symbol | DNMT3B |
Entrez Gene ID | 419287 |
Full Name | DNA methyltransferase 3 beta |
General protein information |
|
Gene Type | protein-coding |
Organism | Gallus gallus(chicken) |
mRNA | Protein | Name |
---|---|---|
XM_015296400.1 | XP_015151886.1 | DNA (cytosine-5)-methyltransferase 3B isoform X1 |
XM_015296399.2 | XP_015151885.1 | DNA (cytosine-5)-methyltransferase 3B isoform X1 |
XM_015296402.2 | XP_015151888.1 | DNA (cytosine-5)-methyltransferase 3B isoform X3 |
XM_015296399.1 | XP_015151885.1 | DNA (cytosine-5)-methyltransferase 3B isoform X1 |
XM_015296401.1 | XP_015151887.1 | DNA (cytosine-5)-methyltransferase 3B isoform X2 |
XM_015296400.2 | XP_015151886.1 | DNA (cytosine-5)-methyltransferase 3B isoform X1 |
XM_015296402.1 | XP_015151888.1 | DNA (cytosine-5)-methyltransferase 3B isoform X3 |
NM_001024828.3 | NP_001019999.2 | DNA (cytosine-5)-methyltransferase 3B |
XM_015296401.2 | XP_015151887.1 | DNA (cytosine-5)-methyltransferase 3B isoform X2 |
Homo sapiens (human) | DNMT3B | NP_008823.1 |
Pan troglodytes (chimpanzee) | DNMT3B | XP_514580.3 |
Canis lupus familiaris (dog) | DNMT3B | XP_003433293.1 |
Bos taurus (cattle) | LOC100848415 | XP_003586886.2 |
Mus musculus (house mouse) | Dnmt3b | NP_001116469.1 |
Rattus norvegicus (Norway rat) | Dnmt3b | NP_001003959.1 |
Gallus gallus (chicken) | DNMT3B | NP_001019999.1 |
Danio rerio (zebrafish) | dnmt4 | NP_001020621.1 |
DNMT3B | XP_001107440.2 |
DNA methyltransferase 3B regulates duration of neural crest production via repression of Sox10.
Hu N, Strobl-Mazzulla PH, Simoes-Costa M, S?nchez-V?squez E, Bronner ME
Proceedings of the National Academy of Sciences of the United States of America111(50)17911-6(2014 Dec)
Expression patterns and miRNA regulation of DNA methyltransferases in chicken primordial germ cells.
Rengaraj D, Lee BR, Lee SI, Seo HW, Han JY
PloS one6(5)e19524(2011 May)
An integrated epigenetic and genetic analysis of DNA methyltransferase genes (DNMTs) in tumor resistant and susceptible chicken lines.
Yu Y, Zhang H, Tian F, Zhang W, Fang H, Song J
PloS one3(7)e2672(2008 Jul)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
DNMT3B directly binds to and methylates the Sox10 promoter in neural tube progenitors, resulting in cessation of neural crest epithelial-to-mesenchymal transition.
Title: DNA methyltransferase 3B regulates duration of neural crest production via repression of Sox10.
analysis of expression patterns and miRNA regulation of DNA methyltransferases in chicken primordial germ cells
Title: Expression patterns and miRNA regulation of DNA methyltransferases in chicken primordial germ cells.
analysis of the potential of epigenetic alterations in DNMT1 and DNMT3a, as well as the DNA mutations in DNMT3b, as epigenetic and genetic factors to neoplastic diseases of chickens
Title: An integrated epigenetic and genetic analysis of DNA methyltransferase genes (DNMTs) in tumor resistant and susceptible chicken lines.
The following DNMT3B gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the DNMT3B cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OGa28523 | |
Clone ID Related Accession (Same CDS sequence) | XM_015296400.1 , XM_015296399.2 , XM_015296399.1 , XM_015296400.2 , NM_001024828.3 | |
Accession Version | NM_001024828.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2556bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-06-25 | |
Organism | Gallus gallus(chicken) | |
Product | DNA (cytosine-5)-methyltransferase 3B | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AADN05000479.1. On Feb 10, 2016 this sequence version replaced NM_001024828.2. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: AB214887.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2201361, SAMEA2201364 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGAGCATGG TAACGAGCCT CGAGCGGCTG GAGCAGCGGC TGGCCGTGAT GGTGGCTGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001019999.2 |
CDS | 121..2676 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001024828.3 |
1 | ATGAGCATGG TAACGAGCCT CGAGCGGCTG GAGCAGCGGC TGGCCGTGAT GGTGGCTGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OGa28523 | |
Clone ID Related Accession (Same CDS sequence) | XM_015296400.1 , XM_015296399.2 , XM_015296399.1 , XM_015296400.2 , NM_001024828.3 | |
Accession Version | XM_015296400.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2556bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-01-03 | |
Organism | Gallus gallus(chicken) | |
Product | DNA (cytosine-5)-methyltransferase 3B isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NT_455993.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Gallus gallus Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGCATGG TAACGAGCCT CGAGCGGCTG GAGCAGCGGC TGGCCGTGAT GGTGGCTGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_015151886.1 |
CDS | 343..2898 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015296400.1 |
1 | ATGAGCATGG TAACGAGCCT CGAGCGGCTG GAGCAGCGGC TGGCCGTGAT GGTGGCTGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OGa28523 | |
Clone ID Related Accession (Same CDS sequence) | XM_015296400.1 , XM_015296399.2 , XM_015296399.1 , XM_015296400.2 , NM_001024828.3 | |
Accession Version | XM_015296399.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2556bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-05-16 | |
Organism | Gallus gallus(chicken) | |
Product | DNA (cytosine-5)-methyltransferase 3B isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_006107.5) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On May 17, 2018 this sequence version replaced XM_015296399.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGCATGG TAACGAGCCT CGAGCGGCTG GAGCAGCGGC TGGCCGTGAT GGTGGCTGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_015151885.1 |
CDS | 307..2862 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015296399.2 |
1 | ATGAGCATGG TAACGAGCCT CGAGCGGCTG GAGCAGCGGC TGGCCGTGAT GGTGGCTGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OGa28523 | |
Clone ID Related Accession (Same CDS sequence) | XM_015296400.1 , XM_015296399.2 , XM_015296399.1 , XM_015296400.2 , NM_001024828.3 | |
Accession Version | XM_015296399.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2556bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-01-03 | |
Organism | Gallus gallus(chicken) | |
Product | DNA (cytosine-5)-methyltransferase 3B isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NT_455993.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Gallus gallus Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGCATGG TAACGAGCCT CGAGCGGCTG GAGCAGCGGC TGGCCGTGAT GGTGGCTGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_015151885.1 |
CDS | 300..2855 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015296399.1 |
1 | ATGAGCATGG TAACGAGCCT CGAGCGGCTG GAGCAGCGGC TGGCCGTGAT GGTGGCTGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OGa28523 | |
Clone ID Related Accession (Same CDS sequence) | XM_015296400.1 , XM_015296399.2 , XM_015296399.1 , XM_015296400.2 , NM_001024828.3 | |
Accession Version | XM_015296400.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2556bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-05-16 | |
Organism | Gallus gallus(chicken) | |
Product | DNA (cytosine-5)-methyltransferase 3B isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_006107.5) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On May 17, 2018 this sequence version replaced XM_015296400.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGCATGG TAACGAGCCT CGAGCGGCTG GAGCAGCGGC TGGCCGTGAT GGTGGCTGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_015151886.1 |
CDS | 554..3109 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015296400.2 |
1 | ATGAGCATGG TAACGAGCCT CGAGCGGCTG GAGCAGCGGC TGGCCGTGAT GGTGGCTGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OGa44738 | |
Clone ID Related Accession (Same CDS sequence) | XM_015296401.1 , XM_015296401.2 | |
Accession Version | XM_015296401.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2484bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-01-03 | |
Organism | Gallus gallus(chicken) | |
Product | DNA (cytosine-5)-methyltransferase 3B isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NT_455993.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Gallus gallus Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGCATGG TAACGAGCCT CGAGCGGCTG GAGCAGCGGC TGGCCGTGAT GGTGGCTGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_015151887.1 |
CDS | 300..2783 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015296401.1 |
1 | ATGAGCATGG TAACGAGCCT CGAGCGGCTG GAGCAGCGGC TGGCCGTGAT GGTGGCTGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OGa44738 | |
Clone ID Related Accession (Same CDS sequence) | XM_015296401.1 , XM_015296401.2 | |
Accession Version | XM_015296401.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2484bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-05-16 | |
Organism | Gallus gallus(chicken) | |
Product | DNA (cytosine-5)-methyltransferase 3B isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_006107.5) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On May 17, 2018 this sequence version replaced XM_015296401.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGCATGG TAACGAGCCT CGAGCGGCTG GAGCAGCGGC TGGCCGTGAT GGTGGCTGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_015151887.1 |
CDS | 307..2790 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015296401.2 |
1 | ATGAGCATGG TAACGAGCCT CGAGCGGCTG GAGCAGCGGC TGGCCGTGAT GGTGGCTGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OGa44739 | |
Clone ID Related Accession (Same CDS sequence) | XM_015296402.2 , XM_015296402.1 | |
Accession Version | XM_015296402.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2445bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-05-16 | |
Organism | Gallus gallus(chicken) | |
Product | DNA (cytosine-5)-methyltransferase 3B isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_006107.5) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On May 17, 2018 this sequence version replaced XM_015296402.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGCATGG TAACGAGCCT CGAGCGGCTG GAGCAGCGGC TGGCCGTGAT GGTGGCTGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_015151888.1 |
CDS | 307..2751 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015296402.2 |
1 | ATGAGCATGG TAACGAGCCT CGAGCGGCTG GAGCAGCGGC TGGCCGTGAT GGTGGCTGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OGa44739 | |
Clone ID Related Accession (Same CDS sequence) | XM_015296402.2 , XM_015296402.1 | |
Accession Version | XM_015296402.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2445bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-01-03 | |
Organism | Gallus gallus(chicken) | |
Product | DNA (cytosine-5)-methyltransferase 3B isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NT_455993.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Gallus gallus Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGCATGG TAACGAGCCT CGAGCGGCTG GAGCAGCGGC TGGCCGTGAT GGTGGCTGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_015151888.1 |
CDS | 299..2743 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015296402.1 |
1 | ATGAGCATGG TAACGAGCCT CGAGCGGCTG GAGCAGCGGC TGGCCGTGAT GGTGGCTGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
DNA methyltransferase 3B regulates duration of neural crest production via repression of Sox10. |
Expression patterns and miRNA regulation of DNA methyltransferases in chicken primordial germ cells. |
An integrated epigenetic and genetic analysis of DNA methyltransferase genes (DNMTs) in tumor resistant and susceptible chicken lines. |