Gene Symbol | Zcchc4 |
Entrez Gene ID | 78796 |
Full Name | zinc finger, CCHC domain containing 4 |
Synonyms | 4930449I23Rik |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
ORF » Species Summary » Mus musculus » Zcchc4 cDNA ORF clone
gRNAs
Gene Symbol | Zcchc4 |
Entrez Gene ID | 78796 |
Full Name | zinc finger, CCHC domain containing 4 |
Synonyms | 4930449I23Rik |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_006504192.3 | XP_006504255.1 | zinc finger CCHC domain-containing protein 4 isoform X1 |
XM_006504189.3 | XP_006504252.1 | zinc finger CCHC domain-containing protein 4 isoform X1 |
NM_001309445.1 | NP_001296374.1 | rRNA N6-adenosine-methyltransferase ZCCHC4 isoform 3 |
NM_030185.3 | NP_084461.1 | rRNA N6-adenosine-methyltransferase ZCCHC4 isoform 1 |
XM_006504189.4 | XP_006504252.1 | rRNA N6-adenosine-methyltransferase ZCCHC4 isoform X1 |
XM_006504192.4 | XP_006504255.1 | rRNA N6-adenosine-methyltransferase ZCCHC4 isoform X1 |
NM_001308144.1 | NP_001295073.1 | rRNA N6-adenosine-methyltransferase ZCCHC4 isoform 2 |
XM_006504190.2 | XP_006504253.1 | rRNA N6-adenosine-methyltransferase ZCCHC4 isoform X2 |
XM_006504191.3 | XP_006504254.1 | rRNA N6-adenosine-methyltransferase ZCCHC4 isoform X3 |
ZCCHC4 | XP_001082520.1 | |
Bos taurus (cattle) | ZCCHC4 | NP_001192628.1 |
Xenopus tropicalis (tropical clawed frog) | zcchc4 | NP_001008134.1 |
Homo sapiens (human) | ZCCHC4 | NP_079212.2 |
Pan troglodytes (chimpanzee) | ZCCHC4 | XP_517131.2 |
Canis lupus familiaris (dog) | ZCCHC4 | XP_536271.4 |
Rattus norvegicus (Norway rat) | Zcchc4 | NP_001101830.1 |
Caenorhabditis elegans (roundworm) | F33A8.4 | NP_496368.1 |
Danio rerio (zebrafish) | zgc:172248 | NP_001107071.1 |
Mus musculus (house mouse) | Zcchc4 | NP_084461.1 |
Gallus gallus (chicken) | ZCCHC4 | XP_420756.3 |
Drosophila melanogaster (fruit fly) | CG12863 | NP_610973.3 |
Normalization and subtraction: two approaches to facilitate gene discovery.
Bonaldo MF, Lennon G, Soares MB
Genome research6(9)791-806(1996 Sep)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Zcchc4 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Zcchc4 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMu35261 | |
Clone ID Related Accession (Same CDS sequence) | XM_006504192.3 , XM_006504189.3 , NM_001309445.1 , XM_006504189.4 , XM_006504192.4 | |
Accession Version | NM_001309445.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 822bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-16 | |
Organism | Mus musculus(house mouse) | |
Product | rRNA N6-adenosine-methyltransferase ZCCHC4 isoform 3 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC158585.3, AK019621.1 and CD773830.1. Transcript Variant: This variant (3) has multiple differences, compared to variant 1. These differences result in distinct 5' and 3' UTRs, the use of an in-frame downstream start codon, and a novel 3' coding region, compared to variant 1. The encoded isoform (3) has a shorter N-terminus, and a shorter and distinct C-terminus, compared to isoform 1. ##Evidence-Data-START## Transcript exon combination :: BC107392.2 [ECO:0000332] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGAGGAGCC TTTTATTGGA CATTGACTTT CGATATTCAC AGTTTTACCT GGAAGGAAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001296374.1 |
CDS | 592..1413 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGAGGAGCC TTTTATTGGA CATTGACTTT CGATATTCAC AGTTTTACCT GGAAGGAAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu35261 | |
Clone ID Related Accession (Same CDS sequence) | XM_006504192.3 , XM_006504189.3 , NM_001309445.1 , XM_006504189.4 , XM_006504192.4 | |
Accession Version | XM_006504192.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 822bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | zinc finger CCHC domain-containing protein 4 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000071.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_006504192.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGGAGCC TTTTATTGGA CATTGACTTT CGATATTCAC AGTTTTACCT GGAAGGAAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006504255.1 |
CDS | 500..1321 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGAGGAGCC TTTTATTGGA CATTGACTTT CGATATTCAC AGTTTTACCT GGAAGGAAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu35261 | |
Clone ID Related Accession (Same CDS sequence) | XM_006504192.3 , XM_006504189.3 , NM_001309445.1 , XM_006504189.4 , XM_006504192.4 | |
Accession Version | XM_006504189.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 822bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | zinc finger CCHC domain-containing protein 4 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000071.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_006504189.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGGAGCC TTTTATTGGA CATTGACTTT CGATATTCAC AGTTTTACCT GGAAGGAAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006504252.1 |
CDS | 481..1302 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGAGGAGCC TTTTATTGGA CATTGACTTT CGATATTCAC AGTTTTACCT GGAAGGAAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu35263 | |
Clone ID Related Accession (Same CDS sequence) | XM_006504191.3 | |
Accession Version | XM_006504191.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 747bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | rRNA N6-adenosine-methyltransferase ZCCHC4 isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000071.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_006504191.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTTCAACC ATCATTTCTT TGATGGAAAG GCTGCCCTTG AAGTGTGCAA GGAATTCTTA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006504254.1 |
CDS | 538..1284 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGTTCAACC ATCATTTCTT TGATGGAAAG GCTGCCCTTG AAGTGTGCAA GGAATTCTTA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu08038 | |
Clone ID Related Accession (Same CDS sequence) | NM_030185.3 | |
Accession Version | NM_030185.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1539bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-16 | |
Organism | Mus musculus(house mouse) | |
Product | rRNA N6-adenosine-methyltransferase ZCCHC4 isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK138997.1, AK049511.1, CB527151.1, BM942023.1, BQ442984.1 and BF466409.1. On Apr 28, 2015 this sequence version replaced NM_030185.2. Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1). ##Evidence-Data-START## Transcript exon combination :: AK138997.1, AK049511.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849380, SAMN00849381 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGCGGCGC CCATGGACTG TCTTGAGTCC CTGGAGGGTG ATGGCGACGC GGGGCGTAGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_084461.1 |
CDS | 37..1575 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGCGGCGC CCATGGACTG TCTTGAGTCC CTGGAGGGTG ATGGCGACGC GGGGCGTAGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu71763 | |
Clone ID Related Accession (Same CDS sequence) | NM_001308144.1 | |
Accession Version | NM_001308144.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1470bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-16 | |
Organism | Mus musculus(house mouse) | |
Product | rRNA N6-adenosine-methyltransferase ZCCHC4 isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK138997.1, AK019621.1 and CD773830.1. On Apr 28, 2015 this sequence version replaced XM_006504188.2. Transcript Variant: This variant (2) uses an alternate splice site in the 3' coding region and contains an alternate 3' terminal exon, compared to variant 1. This results in a novel 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (2) is shorter and has a distinct C-terminus, compared to isoform 1. ##Evidence-Data-START## Transcript exon combination :: AK019621.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849380, SAMN00849381 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGCGGCGC CCATGGACTG TCTTGAGTCC CTGGAGGGTG ATGGCGACGC GGGGCGTAGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001295073.1 |
CDS | 37..1506 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGCGGCGC CCATGGACTG TCTTGAGTCC CTGGAGGGTG ATGGCGACGC GGGGCGTAGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu35262 | |
Clone ID Related Accession (Same CDS sequence) | XM_006504190.2 | |
Accession Version | XM_006504190.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 819bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | rRNA N6-adenosine-methyltransferase ZCCHC4 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000071.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 9, 2015 this sequence version replaced XM_006504190.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGAGGATT CAGTCTTCTG CATCGTCAAA TATTCACAGT TTTACCTGGA AGGAAGCTTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006504253.1 |
CDS | 233..1051 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGAGGATT CAGTCTTCTG CATCGTCAAA TATTCACAGT TTTACCTGGA AGGAAGCTTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu35261 | |
Clone ID Related Accession (Same CDS sequence) | XM_006504192.3 , XM_006504189.3 , NM_001309445.1 , XM_006504189.4 , XM_006504192.4 | |
Accession Version | XM_006504189.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 822bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | rRNA N6-adenosine-methyltransferase ZCCHC4 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000071.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_006504189.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGGAGCC TTTTATTGGA CATTGACTTT CGATATTCAC AGTTTTACCT GGAAGGAAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006504252.1 |
CDS | 569..1390 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAGGAGCC TTTTATTGGA CATTGACTTT CGATATTCAC AGTTTTACCT GGAAGGAAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu35261 | |
Clone ID Related Accession (Same CDS sequence) | XM_006504192.3 , XM_006504189.3 , NM_001309445.1 , XM_006504189.4 , XM_006504192.4 | |
Accession Version | XM_006504192.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 822bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | rRNA N6-adenosine-methyltransferase ZCCHC4 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000071.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_006504192.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGGAGCC TTTTATTGGA CATTGACTTT CGATATTCAC AGTTTTACCT GGAAGGAAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006504255.1 |
CDS | 7494..8315 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGAGGAGCC TTTTATTGGA CATTGACTTT CGATATTCAC AGTTTTACCT GGAAGGAAGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Normalization and subtraction: two approaches to facilitate gene discovery. |