Gene Symbol | R3hdm1 |
Entrez Gene ID | 304763 |
Full Name | R3H domain containing 1 |
Synonyms | R3hdm |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
ORF » Species Summary » Rattus norvegicus » R3hdm1 cDNA ORF clone
Gene Symbol | R3hdm1 |
Entrez Gene ID | 304763 |
Full Name | R3H domain containing 1 |
Synonyms | R3hdm |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_006249690.3 | XP_006249752.1 | R3H domain-containing protein 1 isoform X1 |
XM_008769459.1 | XP_008767681.1 | R3H domain-containing protein 1 isoform X2 |
XM_008769463.1 | XP_008767685.1 | R3H domain-containing protein 1 isoform X6 |
XM_006249694.3 | XP_006249756.1 | R3H domain-containing protein 1 isoform X4 |
XM_008769461.2 | XP_008767683.1 | R3H domain-containing protein 1 isoform X5 |
XM_006249698.1 | XP_006249760.1 | R3H domain-containing protein 1 isoform X8 |
XM_008769460.2 | XP_008767682.1 | R3H domain-containing protein 1 isoform X3 |
NM_001134867.1 | NP_001128339.1 | R3H domain-containing protein 1 |
XM_017598788.1 | XP_017454277.1 | R3H domain-containing protein 1 isoform X7 |
Rattus norvegicus (Norway rat) | R3hdm1 | NP_001128339.1 |
Danio rerio (zebrafish) | r3hdm1 | XP_688545.6 |
Homo sapiens (human) | R3HDM1 | NP_056176.2 |
Bos taurus (cattle) | R3HDM1 | XP_002685459.2 |
Gallus gallus (chicken) | R3HDM1 | XP_422137.3 |
Xenopus tropicalis (tropical clawed frog) | r3hdm1 | XP_004917702.1 |
Pan troglodytes (chimpanzee) | R3HDM1 | XP_515807.3 |
Canis lupus familiaris (dog) | R3HDM1 | XP_005632006.1 |
Mus musculus (house mouse) | R3hdm1 | NP_861415.2 |
Insights into RNA biology from an atlas of mammalian mRNA-binding proteins.
Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J, Hentze MW
Cell149(6)1393-406(2012 Jun)
The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts.
Baltz AG, Munschauer M, Schwanh?usser B, Vasile A, Murakawa Y, Schueler M, Youngs N, Penfold-Brown D, Drew K, Milek M, Wyler E, Bonneau R, Selbach M, Dieterich C, Landthaler M
Molecular cell46(5)674-90(2012 Jun)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following R3hdm1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the R3hdm1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ORa35248 | |
Clone ID Related Accession (Same CDS sequence) | XM_008769463.1 | |
Accession Version | XM_008769463.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2913bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | R3H domain-containing protein 1 isoform X6 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005112.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGGATGT CTGATATTGT TATTATAAAA GATGAAACTG AAACAATGAA GGATTTGGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008767685.1 |
CDS | 438..3350 |
Translation |
Target ORF information:
Target ORF information:
|
XM_008769463.1 |
1 | ATGAGGATGT CTGATATTGT TATTATAAAA GATGAAACTG AAACAATGAA GGATTTGGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa35249 | |
Clone ID Related Accession (Same CDS sequence) | XM_006249698.1 | |
Accession Version | XM_006249698.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2763bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | R3H domain-containing protein 1 isoform X8 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005112.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGAGCGGG AAGTTGCCGA TTGCAGGGCA GTAAATTCAG GAATCTTTAA AAGAAAGAGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006249760.1 |
CDS | 164..2926 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006249698.1 |
1 | ATGGAGCGGG AAGTTGCCGA TTGCAGGGCA GTAAATTCAG GAATCTTTAA AAGAAAGAGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa58055 | |
Clone ID Related Accession (Same CDS sequence) | XM_017598788.1 | |
Accession Version | XM_017598788.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2898bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | R3H domain-containing protein 1 isoform X7 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005112.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGATGCTGC TGAAATTGGA ACAAGAAATT TTAGATTTCA TTGGTAATAA TGAGTCCCCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017454277.1 |
CDS | 525..3422 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017598788.1 |
1 | ATGATGCTGC TGAAATTGGA ACAAGAAATT TTAGATTTCA TTGGTAATAA TGAGTCCCCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa03702 | |
Clone ID Related Accession (Same CDS sequence) | XM_006249690.3 , NM_001134867.1 | |
Accession Version | NM_001134867.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3402bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-10-02 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | R3H domain-containing protein 1 | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AABR07020885.1. On Sep 10, 2008 this sequence version replaced XM_573442.2. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMD00052296, SAMD00052297 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGAGGATGT CTGATATTGT TATTATAAAA GATGAAACTG AAACAATGAA GGATTTGGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001128339.1 |
CDS | 442..3843 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001134867.1 |
1 | ATGAGGATGT CTGATATTGT TATTATAAAA GATGAAACTG AAACAATGAA GGATTTGGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa03702 | |
Clone ID Related Accession (Same CDS sequence) | XM_006249690.3 , NM_001134867.1 | |
Accession Version | XM_006249690.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3402bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | R3H domain-containing protein 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005112.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_006249690.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGGATGT CTGATATTGT TATTATAAAA GATGAAACTG AAACAATGAA GGATTTGGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006249752.1 |
CDS | 814..4215 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006249690.3 |
1 | ATGAGGATGT CTGATATTGT TATTATAAAA GATGAAACTG AAACAATGAA GGATTTGGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa35243 | |
Clone ID Related Accession (Same CDS sequence) | XM_008769459.1 | |
Accession Version | XM_008769459.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3354bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | R3H domain-containing protein 1 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005112.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGGATGT CTGATATTGT TATTATAAAA GATGAAACTG AAACAATGAA GGATTTGGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008767681.1 |
CDS | 439..3792 |
Translation |
Target ORF information:
Target ORF information:
|
XM_008769459.1 |
1 | ATGAGGATGT CTGATATTGT TATTATAAAA GATGAAACTG AAACAATGAA GGATTTGGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa35244 | |
Clone ID Related Accession (Same CDS sequence) | XM_008769460.2 | |
Accession Version | XM_008769460.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3300bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | R3H domain-containing protein 1 isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005112.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_008769460.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGGATGT CTGATATTGT TATTATAAAA GATGAAACTG AAACAATGAA GGATTTGGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008767682.1 |
CDS | 438..3737 |
Translation |
Target ORF information:
Target ORF information:
|
XM_008769460.2 |
1 | ATGAGGATGT CTGATATTGT TATTATAAAA GATGAAACTG AAACAATGAA GGATTTGGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa35245 | |
Clone ID Related Accession (Same CDS sequence) | XM_006249694.3 | |
Accession Version | XM_006249694.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3270bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | R3H domain-containing protein 1 isoform X4 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005112.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_006249694.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGGATGT CTGATATTGT TATTATAAAA GATGAAACTG AAACAATGAA GGATTTGGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006249756.1 |
CDS | 438..3707 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006249694.3 |
1 | ATGAGGATGT CTGATATTGT TATTATAAAA GATGAAACTG AAACAATGAA GGATTTGGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa35246 | |
Clone ID Related Accession (Same CDS sequence) | XM_008769461.2 | |
Accession Version | XM_008769461.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3147bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | R3H domain-containing protein 1 isoform X5 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005112.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_008769461.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGGATGT CTGATATTGT TATTATAAAA GATGAAACTG AAACAATGAA GGATTTGGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008767683.1 |
CDS | 438..3584 |
Translation |
Target ORF information:
Target ORF information:
|
XM_008769461.2 |
1 | ATGAGGATGT CTGATATTGT TATTATAAAA GATGAAACTG AAACAATGAA GGATTTGGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. |
The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. |