| Gene Symbol | IDP2408 |
| Entrez Gene ID | 100272597 |
| Full Name | uncharacterized LOC100272597 |
| Gene Type | protein-coding |
| Organism | Zea mays |
IVD Raw Materials
ORF » Species Summary » Zea mays » IDP2408 cDNA ORF clone
| mRNA | Protein | Name |
|---|---|---|
| XM_008678526.2 | XP_008676748.1 | uncharacterized protein LOC100272597 isoform X1 |
| XM_008678527.3 | XP_008676749.1 | uncharacterized protein LOC100272597 isoform X2 |
| XM_008678526.3 | XP_008676748.1 | uncharacterized protein LOC100272597 isoform X1 |
| XM_008678527.2 | XP_008676749.1 | uncharacterized protein LOC100272597 isoform X2 |
| NM_001359662.1 | NP_001346591.1 | uncharacterized protein LOC100272597 |
| NM_001147060.1 | NP_001140532.1 | uncharacterized protein LOC100272597 |
Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
Soderlund C, Descour A, Kudrna D, Bomhoff M, Boyd L, Currie J, Angelova A, Collura K, Wissotski M, Ashley E, Morrow D, Fernandes J, Walbot V, Yu Y
PLoS genetics5(11)e1000740(2009 Nov)
Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing.
Vega-Arregu?n JC, Ibarra-Laclette E, Jim?nez-Moraila B, Mart?nez O, Vielle-Calzada JP, Herrera-Estrella L, Herrera-Estrella A
BMC genomics10299(2009 Jul)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following IDP2408 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the IDP2408 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
| CloneID | OZa16581 | |
| Clone ID Related Accession (Same CDS sequence) | NM_001147060.1 | |
| Accession Version | NM_001147060.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 666bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-04-01 | |
| Organism | Zea mays | |
| Product | uncharacterized protein LOC100272597 | |
| Comment | Comment: PREDICTED REFSEQ: This record has not been reviewed and the function is unknown. The reference sequence was derived from BT039018.1. ##Evidence-Data-START## Transcript exon combination :: BT039018.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMN00780084, SAMN00780085 [ECO:0000350] ##Evidence-Data-END## | |
1 | ATGGGAGGGA AGCAGGCTGA TCGGCTTCGA GAGGTGCAGA ATGAGATTAC CTTCTACCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001140532.1 |
| CDS | 76..741 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001147060.1 |
1 | ATGGGAGGGA AGCAGGCTGA TCGGCTTCGA GAGGTGCAGA ATGAGATTAC CTTCTACCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OZa25240 | |
| Clone ID Related Accession (Same CDS sequence) | XM_008678527.3 , XM_008678527.2 , NM_001359662.1 | |
| Accession Version | NM_001359662.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1527bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2019-02-07 | |
| Organism | Zea mays | |
| Product | uncharacterized protein LOC100272597 | |
| Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from LPUQ01002145.1, EB705351.1 and BT039018.1. On Jan 13, 2018 this sequence version replaced XM_008678527.3. ##Evidence-Data-START## RNAseq introns :: mixed/partial sample support SAMN00780084, SAMN00780085 [ECO:0000350] ##Evidence-Data-END## | |
1 | ATGGCACTCT GGAACGGCAT AGGTCAGGTG GCAAGCATCG CACAGTTAGC CGGGGTCGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001346591.1 |
| CDS | 276..1802 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001359662.1 |
1 | ATGGCACTCT GGAACGGCAT AGGTCAGGTG GCAAGCATCG CACAGTTAGC CGGGGTCGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OZa25239 | |
| Clone ID Related Accession (Same CDS sequence) | XM_008678526.2 , XM_008678526.3 | |
| Accession Version | XM_008678526.2 | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1533bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-03-19 | |
| Organism | Zea mays | |
| Product | uncharacterized protein LOC100272597 isoform X1 | |
| Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024462.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 20, 2017 this sequence version replaced XM_008678526.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Zea mays Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGGCACTCT GGAACGGCAT AGGTCAGGTG GCAAGCATCG CACAGTTAGC CGGGGTCGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_008676748.1 |
| CDS | 1299..2831 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_008678526.2 |
1 | ATGGCACTCT GGAACGGCAT AGGTCAGGTG GCAAGCATCG CACAGTTAGC CGGGGTCGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OZa25239 | |
| Clone ID Related Accession (Same CDS sequence) | XM_008678526.2 , XM_008678526.3 | |
| Accession Version | XM_008678526.3 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1533bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-12-17 | |
| Organism | Zea mays | |
| Product | uncharacterized protein LOC100272597 isoform X1 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024462.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Dec 18, 2017 this sequence version replaced XM_008678526.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGGCACTCT GGAACGGCAT AGGTCAGGTG GCAAGCATCG CACAGTTAGC CGGGGTCGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_008676748.1 |
| CDS | 1304..2836 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_008678526.3 |
1 | ATGGCACTCT GGAACGGCAT AGGTCAGGTG GCAAGCATCG CACAGTTAGC CGGGGTCGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OZa25240 | |
| Clone ID Related Accession (Same CDS sequence) | XM_008678527.3 , XM_008678527.2 , NM_001359662.1 | |
| Accession Version | XM_008678527.3 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1527bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-12-17 | |
| Organism | Zea mays | |
| Product | uncharacterized protein LOC100272597 isoform X2 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024462.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Dec 18, 2017 this sequence version replaced XM_008678527.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGGCACTCT GGAACGGCAT AGGTCAGGTG GCAAGCATCG CACAGTTAGC CGGGGTCGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_008676749.1 |
| CDS | 1304..2830 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_008678527.3 |
1 | ATGGCACTCT GGAACGGCAT AGGTCAGGTG GCAAGCATCG CACAGTTAGC CGGGGTCGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OZa25240 | |
| Clone ID Related Accession (Same CDS sequence) | XM_008678527.3 , XM_008678527.2 , NM_001359662.1 | |
| Accession Version | XM_008678527.2 | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1527bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-03-19 | |
| Organism | Zea mays | |
| Product | uncharacterized protein LOC100272597 isoform X2 | |
| Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024462.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 20, 2017 this sequence version replaced XM_008678527.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Zea mays Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGGCACTCT GGAACGGCAT AGGTCAGGTG GCAAGCATCG CACAGTTAGC CGGGGTCGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_008676749.1 |
| CDS | 1299..2825 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_008678527.2 |
1 | ATGGCACTCT GGAACGGCAT AGGTCAGGTG GCAAGCATCG CACAGTTAGC CGGGGTCGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. |
Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing. |