LINJ_16_1040 cDNA ORF clone, Leishmania infantum JPCM5

Gene
Clones
gRNAs

Summary

Gene Symbol	LINJ_16_1040
Entrez Gene ID	5067998
Full Name	conserved hypothetical protein
Gene Type	protein-coding
Organism	Leishmania infantum JPCM5

mRNA and Protein(s)

mRNA	Protein	Name
XM_001464559.2	XP_001464596.2	conserved hypothetical protein

Pathways from BioSystems
Gene Ontology
Bibliography

Related articles in PubMed

Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania.
Rogers MB, Hilley JD, Dickens NJ, Wilkes J, Bates PA, Depledge DP, Harris D, Her Y, Herzyk P, Imamura H, Otto TD, Sanders M, Seeger K, Dujardin JC, Berriman M, Smith DF, Hertz-Fowler C, Mottram JC
Genome research21(12)2129-42(2011 Dec)

Comparative genomic analysis of three Leishmania species that cause diverse human disease.
Peacock CS, Seeger K, Harris D, Murphy L, Ruiz JC, Quail MA, Peters N, Adlem E, Tivey A, Aslett M, Kerhornou A, Ivens A, Fraser A, Rajandream MA, Carver T, Norbertczak H, Chillingworth T, Hance Z, Jagels K, Moule S, Ormond D, Rutter S, Squares R, Whitehead S, Rabbinowitsch E, Arrowsmith C, White B, Thurston S, Bringaud F, Baldauf SL, Faulconbridge A, Jeffares D, Depledge DP, Oyola SO, Hilley JD, Brito LO, Tosi LR, Barrell B, Cruz AK, Mottram JC, Smith DF, Berriman M
Nature genetics39(7)839-47(2007 Jul)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following LINJ_16_1040 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LINJ_16_1040 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OLc01771	XM_001464559.2 Latest version!	Leishmania infantum JPCM5 conserved hypothetical protein partial mRNA.	pcDNA3.1-C-(k)DYK or customized vector	TBD	$510.30 $729.00

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** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

LINJ_16_1040 ( XM_001464559.2 ) cDNA ORF clone, Leishmania infantum JPCM5 -> XP_001464596.2 Leishmania infantum JPCM5 conserved hypothetical protein partial mRNA.

Price & Availability↑

CloneID	OLc01771
Clone ID Related Accession (Same CDS sequence)	XM_001464559.2
Accession Version	XM_001464559.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2895bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2015-07-15
Organism	Leishmania infantum JPCM5
Product	conserved hypothetical protein
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_009400). On Jul 14, 2011 this sequence version replaced XM_001464559.1. COMPLETENESS: incomplete on both ends.

ATGTGCAACT CGAATCATCA TGAGCGAAGC CGCGGCACCA AGGCTGGCGT TGCGGCAGAG 
ACGGCGTTCA TTCCAGATGT TCCTGCCAAG ATGGGGCGCG GCAGCATGTT TGCGCGAGAA 
CGGCACGAGC GTCGCCGCGG GATACGACGA CTGATCCTCC CATGTGTGTT TCTTGCTGGC 
TTCGTAGCGG GTTGGATGCT CCACAACATG TTTCGTGCCA CGATAGCTGT GCCCCACGAC 
ATTGAGGCAG CAGTGGTGGC GCAGCCGAAG CGTGAGGGCG TTGGCCCGAC TGGGATGCCA 
CGGCCCACCA CACCGCCACT GCCTTCCGCT AAGTTCAAGC TGCCCTCCAA CGATTCGCGA 
ACGAAGACGC CAGCAACGAA AGCATCCGGT GCGCGAAAGG TGGGTCCGCG AGTCCGCGGC 
GGGGATCGTA GTCACTACAG TGAGGAAGGC AAGTACGCCC CGGAGGAGCC GCGCCTCCTG 
CCTGGGCTGC AGATCCAGCG ACGCACCTTC ACCCCGGCGG AGCTGCTTGA GCGCTTCGGC 
GACACGGACA TCATCTACAG CTTCGTCAAC GGCAGCGAGG CGAACCACCA GTATCGGAAG 
CTCGTCCAAA AAGCGTGCTT AATGGCCGTT CTCAAGGCCG AGAATGACTC GTATATATCG 
CTGAATCGCG ACTTCACCGC AGGCGCCTCT ACCACCTCAC CAAGGAAAGT TTATGCAGCC 
ACGCCGGCAG AGATGCCCGC AGAGGCGGCG GCCGACCAGA AAAGAGGGCT GTTGTCTGGG 
CTGCAGGCTG CGACTACCTC TGCGCCACTC AATACTACCT CCACGACCGC GCCCACACCC 
TTTTCACATC TGTCGTATGT GCCCTCGCTA TTACGACCCG TCTTGGGACC GCGCAAAACC 
TTTGCCGAGC TCGTGAAGCG CGTCACAGCT GCTGCCCGCC ACGGTGTCAG CGTCCGCGAT 
CGCGAGACGG ACGAGCTGCG GCACAGCCTG CGCAGCGTGG AGCAGCACGT GCGGTGGCAC 
CGCGGCCGCG TGGTGATGGT GTCGCCCGGG CACCACCCGA CGTGGGTGGA CGGCGCGAAG 
AACTTCCTTG CTGGGATGTG CGGCGGTGCG CGCGTGCAGG CGCTGCGGTC GAGCGGGACG 
CACCTGCGCG TGACGACTGT GCACCAGGAC GCCGTGATGC CGTACGGGAT GCGGCTGACG 
GTGGACTCGC ACGTGATCGA GCAGCACCTG TGGCGCGTGC GCAACATGAC ACCCGTGCAC 
GTGTACATGA ACGACGACTA CTTTGTGAAC CGCGACGTTG CGATCACGGA CCTGTTCAAC 
GAGTACGGCG GCACGATTGT GCGGACGGAG AGGGGCATCA TTGCGGCCGG CGCTGTCGCA 
GATAGAAGCG CTTCCTGGGC AAAGGGCGTG CTGCACACGC AGCAGTTCAA CATCATGGAG 
CTGGACGTGC TGCGCGAGGA CTACCTGCCG GAGGCCCTAG TCGCCATGTG GGACAGTCTG 
AAGCGCGTAA ACAGGAGCGC TGGTGCCGCT GCCGTGACTG CTATTTCCGT ACCACCCCTT 
GACGAGGCGG TCGATGTCGC GCATCAATAC GAACCGGACC CGCTGCCCGG CAAGTCGCTC 
ATACCACGCC GCCCGCGCCG ATACACCACC CACGCGCCGT TCGTGTACTG CACGAATATG 
TTCCGCTTCT TCGAGACCCG CTACGAGCGC GAGTTTGCCG CGACAGCGCT TCGCCACCGC 
AGTCGCAAGG CGCGCGACCT CTTCATCCCG TTTGTGTACA ACGCCTTCAT CATGGCGCGG 
CCGTGGCAGG CGTCGCCGAA GTTCCTGCCG TACCTGCTGG AGCTGCACCG GAGCCGACGA 
CAGGGGCGGG CGGACGCGAT GCCGCCGACG GAGATCGTGC TGGACAACGT CGACGGCTGC 
GGCCCCGCAT CGCTGCTCAG CGGCGCGACT GAGTCTGATT GCGTGTTTGC CAAGTTCCTG 
AACGACTTAA CGCTGAACGA GGCGGTGGTG GAGCGCGTGC GGCAGGTGAA CCCGCTGTAC 
TTCAACATCA ACGCCGGGTT CAGCAGCGCG GAGGCTGCGG ACCAGCTGCG CCGCTTCCTG 
CACGGCAAGT TTCCGACTCC GGTGTACCTG GAGGTGGGCG GAGCCCCGCC CCCCGGCGAG 
GGCCTCGTAG ACGGCGCGGG GGAGGTGGTG GGCGGCAGGA CGAGGGCTGC CGGGGCCGCC 
GCGGCTGCTG AGGAGGAAGC GCTGTCGAGG CTGTTTGGCG ACCTGATGGC GCTGCCGGTG 
GTGGGCGTTG TGTCGTACGA GGAGGGCGTG TGCCCGCTTG TGCGGAGCCT TGCGCTTGCG 
TTCGCGGGGC ACCACCGTGG CGGCGTGCGT GTGAGCGTGG AGCAGCACGG CGGCGCGGCG 
CTGCGTGAGG CGCGCGCTGC GCTTGGGCAC CGCGTGGTGA GCGCGATGCC TGCGCCTGCG 
TGCGCGTACA AGGAGCAGGT GAGCGTGGAC CCCGCGGCAC GGGGTGAGAG CGTTGCCGAG 
ATTGCCCGGC GCGCCATGGG TGAAATGCGG GGCGGCGTGG AGCTGCCGTC GACGTGCGGC 
GCCGGCGGCG CTGGGCTGCG CGTGCGCGGG TTCGTGGTGG ACGCGCGGAC GCGCGGGGCG 
CCTGTGCGGA GCGCTGCTGC GCTGCGGGAC GCGCTTGCGG TGCCTGCGCA GACGCTGTCG 
CTGGAGGACT TCCGCGCCGT TGCTGTTGGG CCGTCGGAGG GCGACGTGGT GCTGGTTGTG 
TCGCGCGAGG ACGCGGAGGC GAAGGCGGTG CACTGGGTGA ATGGGGCGTC GGAGAGTGAC 
CTGCTTGTGA CGTACCCGCT GCCGGTGGAG GCGTACGAGG ACATGGGCGC GGAGGTGCGG 
TGGTCGGTGC CGTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_001464596.2
CDS	1..2895
Translation	MCNSNHHERSRGTKAGVAAETAFIPDVPAKMGRGSMFARERHERRRGIRRLILPCVFLAGFVAGWMLHNMFRATIAVPHDIEAAVVAQPKREGVGPTGMPRPTTPPLPSAKFKLPSNDSRTKTPATKASGARKVGPRVRGGDRSHYSEEGKYAPEEPRLLPGLQIQRRTFTPAELLERFGDTDIIYSFVNGSEANHQYRKLVQKACLMAVLKAENDSYISLNRDFTAGASTTSPRKVYAATPAEMPAEAAADQKRGLLSGLQAATTSAPLNTTSTTAPTPFSHLSYVPSLLRPVLGPRKTFAELVKRVTAAARHGVSVRDRETDELRHSLRSVEQHVRWHRGRVVMVSPGHHPTWVDGAKNFLAGMCGGARVQALRSSGTHLRVTTVHQDAVMPYGMRLTVDSHVIEQHLWRVRNMTPVHVYMNDDYFVNRDVAITDLFNEYGGTIVRTERGIIAAGAVADRSASWAKGVLHTQQFNIMELDVLREDYLPEALVAMWDSLKRVNRSAGAAAVTAISVPPLDEAVDVAHQYEPDPLPGKSLIPRRPRRYTTHAPFVYCTNMFRFFETRYEREFAATALRHRSRKARDLFIPFVYNAFIMARPWQASPKFLPYLLELHRSRRQGRADAMPPTEIVLDNVDGCGPASLLSGATESDCVFAKFLNDLTLNEAVVERVRQVNPLYFNINAGFSSAEAADQLRRFLHGKFPTPVYLEVGGAPPPGEGLVDGAGEVVGGRTRAAGAAAAAEEEALSRLFGDLMALPVVGVVSYEEGVCPLVRSLALAFAGHHRGGVRVSVEQHGGAALREARAALGHRVVSAMPAPACAYKEQVSVDPAARGESVAEIARRAMGEMRGGVELPSTCGAGGAGLRVRGFVVDARTRGAPVRSAAALRDALAVPAQTLSLEDFRAVAVGPSEGDVVLVVSREDAEAKAVHWVNGASESDLLVTYPLPVEAYEDMGAEVRWSVP

Target ORF information:

RefSeq Version	XM_001464559.2
Organism	Leishmania infantum JPCM5
Definition	Leishmania infantum JPCM5 conserved hypothetical protein partial mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_001464559.2

ORF Insert Sequence:

ATGTGCAACT CGAATCATCA TGAGCGAAGC CGCGGCACCA AGGCTGGCGT TGCGGCAGAG 
ACGGCGTTCA TTCCAGATGT TCCTGCCAAG ATGGGGCGCG GCAGCATGTT TGCGCGAGAA 
CGGCACGAGC GTCGCCGCGG GATACGACGA CTGATCCTCC CATGTGTGTT TCTTGCTGGC 
TTCGTAGCGG GTTGGATGCT CCACAACATG TTTCGTGCCA CGATAGCTGT GCCCCACGAC 
ATTGAGGCAG CAGTGGTGGC GCAGCCGAAG CGTGAGGGCG TTGGCCCGAC TGGGATGCCA 
CGGCCCACCA CACCGCCACT GCCTTCCGCT AAGTTCAAGC TGCCCTCCAA CGATTCGCGA 
ACGAAGACGC CAGCAACGAA AGCATCCGGT GCGCGAAAGG TGGGTCCGCG AGTCCGCGGC 
GGGGATCGTA GTCACTACAG TGAGGAAGGC AAGTACGCCC CGGAGGAGCC GCGCCTCCTG 
CCTGGGCTGC AGATCCAGCG ACGCACCTTC ACCCCGGCGG AGCTGCTTGA GCGCTTCGGC 
GACACGGACA TCATCTACAG CTTCGTCAAC GGCAGCGAGG CGAACCACCA GTATCGGAAG 
CTCGTCCAAA AAGCGTGCTT AATGGCCGTT CTCAAGGCCG AGAATGACTC GTATATATCG 
CTGAATCGCG ACTTCACCGC AGGCGCCTCT ACCACCTCAC CAAGGAAAGT TTATGCAGCC 
ACGCCGGCAG AGATGCCCGC AGAGGCGGCG GCCGACCAGA AAAGAGGGCT GTTGTCTGGG 
CTGCAGGCTG CGACTACCTC TGCGCCACTC AATACTACCT CCACGACCGC GCCCACACCC 
TTTTCACATC TGTCGTATGT GCCCTCGCTA TTACGACCCG TCTTGGGACC GCGCAAAACC 
TTTGCCGAGC TCGTGAAGCG CGTCACAGCT GCTGCCCGCC ACGGTGTCAG CGTCCGCGAT 
CGCGAGACGG ACGAGCTGCG GCACAGCCTG CGCAGCGTGG AGCAGCACGT GCGGTGGCAC 
CGCGGCCGCG TGGTGATGGT GTCGCCCGGG CACCACCCGA CGTGGGTGGA CGGCGCGAAG 
AACTTCCTTG CTGGGATGTG CGGCGGTGCG CGCGTGCAGG CGCTGCGGTC GAGCGGGACG 
CACCTGCGCG TGACGACTGT GCACCAGGAC GCCGTGATGC CGTACGGGAT GCGGCTGACG 
GTGGACTCGC ACGTGATCGA GCAGCACCTG TGGCGCGTGC GCAACATGAC ACCCGTGCAC 
GTGTACATGA ACGACGACTA CTTTGTGAAC CGCGACGTTG CGATCACGGA CCTGTTCAAC 
GAGTACGGCG GCACGATTGT GCGGACGGAG AGGGGCATCA TTGCGGCCGG CGCTGTCGCA 
GATAGAAGCG CTTCCTGGGC AAAGGGCGTG CTGCACACGC AGCAGTTCAA CATCATGGAG 
CTGGACGTGC TGCGCGAGGA CTACCTGCCG GAGGCCCTAG TCGCCATGTG GGACAGTCTG 
AAGCGCGTAA ACAGGAGCGC TGGTGCCGCT GCCGTGACTG CTATTTCCGT ACCACCCCTT 
GACGAGGCGG TCGATGTCGC GCATCAATAC GAACCGGACC CGCTGCCCGG CAAGTCGCTC 
ATACCACGCC GCCCGCGCCG ATACACCACC CACGCGCCGT TCGTGTACTG CACGAATATG 
TTCCGCTTCT TCGAGACCCG CTACGAGCGC GAGTTTGCCG CGACAGCGCT TCGCCACCGC 
AGTCGCAAGG CGCGCGACCT CTTCATCCCG TTTGTGTACA ACGCCTTCAT CATGGCGCGG 
CCGTGGCAGG CGTCGCCGAA GTTCCTGCCG TACCTGCTGG AGCTGCACCG GAGCCGACGA 
CAGGGGCGGG CGGACGCGAT GCCGCCGACG GAGATCGTGC TGGACAACGT CGACGGCTGC 
GGCCCCGCAT CGCTGCTCAG CGGCGCGACT GAGTCTGATT GCGTGTTTGC CAAGTTCCTG 
AACGACTTAA CGCTGAACGA GGCGGTGGTG GAGCGCGTGC GGCAGGTGAA CCCGCTGTAC 
TTCAACATCA ACGCCGGGTT CAGCAGCGCG GAGGCTGCGG ACCAGCTGCG CCGCTTCCTG 
CACGGCAAGT TTCCGACTCC GGTGTACCTG GAGGTGGGCG GAGCCCCGCC CCCCGGCGAG 
GGCCTCGTAG ACGGCGCGGG GGAGGTGGTG GGCGGCAGGA CGAGGGCTGC CGGGGCCGCC 
GCGGCTGCTG AGGAGGAAGC GCTGTCGAGG CTGTTTGGCG ACCTGATGGC GCTGCCGGTG 
GTGGGCGTTG TGTCGTACGA GGAGGGCGTG TGCCCGCTTG TGCGGAGCCT TGCGCTTGCG 
TTCGCGGGGC ACCACCGTGG CGGCGTGCGT GTGAGCGTGG AGCAGCACGG CGGCGCGGCG 
CTGCGTGAGG CGCGCGCTGC GCTTGGGCAC CGCGTGGTGA GCGCGATGCC TGCGCCTGCG 
TGCGCGTACA AGGAGCAGGT GAGCGTGGAC CCCGCGGCAC GGGGTGAGAG CGTTGCCGAG 
ATTGCCCGGC GCGCCATGGG TGAAATGCGG GGCGGCGTGG AGCTGCCGTC GACGTGCGGC 
GCCGGCGGCG CTGGGCTGCG CGTGCGCGGG TTCGTGGTGG ACGCGCGGAC GCGCGGGGCG 
CCTGTGCGGA GCGCTGCTGC GCTGCGGGAC GCGCTTGCGG TGCCTGCGCA GACGCTGTCG 
CTGGAGGACT TCCGCGCCGT TGCTGTTGGG CCGTCGGAGG GCGACGTGGT GCTGGTTGTG 
TCGCGCGAGG ACGCGGAGGC GAAGGCGGTG CACTGGGTGA ATGGGGCGTC GGAGAGTGAC 
CTGCTTGTGA CGTACCCGCT GCCGGTGGAG GCGTACGAGG ACATGGGCGC GGAGGTGCGG 
TGGTCGGTGC CGTAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania.
Genome research21(12)2129-42(2011 Dec)
Rogers MB,Hilley JD,Dickens NJ,Wilkes J,Bates PA,Depledge DP,Harris D,Her Y,Herzyk P,Imamura H,Otto TD,Sanders M,Seeger K,Dujardin JC,Berriman M,Smith DF,Hertz-Fowler C,Mottram JC

Comparative genomic analysis of three Leishmania species that cause diverse human disease.
Nature genetics39(7)839-47(2007 Jul)
Peacock CS,Seeger K,Harris D,Murphy L,Ruiz JC,Quail MA,Peters N,Adlem E,Tivey A,Aslett M,Kerhornou A,Ivens A,Fraser A,Rajandream MA,Carver T,Norbertczak H,Chillingworth T,Hance Z,Jagels K,Moule S,Ormond D,Rutter S,Squares R,Whitehead S,Rabbinowitsch E,Arrowsmith C,White B,Thurston S,Bringaud F,Baldauf SL,Faulconbridge A,Jeffares D,Depledge DP,Oyola SO,Hilley JD,Brito LO,Tosi LR,Barrell B,Cruz AK,Mottram JC,Smith DF,Berriman M

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LINJ_16_1040 cDNA ORF clone, Leishmania infantum JPCM5

Gene

Clones

gRNAs

Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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