Gene Symbol | CNTNAP1 |
Entrez Gene ID | 540997 |
Full Name | contactin associated protein 1 |
General protein information |
|
Gene Type | protein-coding |
Organism | Bos taurus(cattle) |
ORF » Species Summary » Bos taurus » CNTNAP1 cDNA ORF clone
Gene Symbol | CNTNAP1 |
Entrez Gene ID | 540997 |
Full Name | contactin associated protein 1 |
General protein information |
|
Gene Type | protein-coding |
Organism | Bos taurus(cattle) |
mRNA | Protein | Name |
---|---|---|
XM_005220746.3 | XP_005220803.1 | contactin-associated protein 1 isoform X1 |
XM_005220747.3 | XP_005220804.1 | contactin-associated protein 1 isoform X2 |
XM_005220747.4 | XP_005220804.2 | contactin-associated protein 1 isoform X2 |
XM_005220746.4 | XP_005220803.2 | contactin-associated protein 1 isoform X1 |
XM_024980374.1 | XP_024836142.1 | contactin-associated protein 1 isoform X3 |
NM_001206895.1 | NP_001193824.1 | contactin-associated protein 1 precursor |
CNTNAP1 | XP_001111174.1 | |
Canis lupus familiaris (dog) | CNTNAP1 | XP_548083.3 |
Mus musculus (house mouse) | Cntnap1 | NP_058062.2 |
Danio rerio (zebrafish) | LOC566220 | XP_694580.5 |
Bos taurus (cattle) | CNTNAP1 | NP_001193824.1 |
Rattus norvegicus (Norway rat) | Cntnap1 | NP_114450.1 |
Xenopus tropicalis (tropical clawed frog) | cntnap1 | NP_001090759.1 |
Homo sapiens (human) | CNTNAP1 | NP_003623.1 |
Pan troglodytes (chimpanzee) | CNTNAP1 | XP_511518.2 |
Gallus gallus (chicken) | CNTNAP1 | XP_003642874.2 |
A whole-genome assembly of the domestic cow, Bos taurus.
Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Mar?ais G, Roberts M, Subramanian P, Yorke JA, Salzberg SL
Genome biology10(4)R42(2009)
A second generation radiation hybrid map to aid the assembly of the bovine genome sequence.
Jann OC, Aerts J, Jones M, Hastings N, Law A, McKay S, Marques E, Prasad A, Yu J, Moore SS, Floriot S, Mah? MF, Eggen A, Silveri L, Negrini R, Milanesi E, Ajmone-Marsan P, Valentini A, Marchitelli C, Savarese MC, Janitz M, Herwig R, Hennig S, Gorni C, Connor EE, Sonstegard TS, Smith T, Dr?gem?ller C, Williams JL
BMC genomics7283(2006 Nov)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following CNTNAP1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the CNTNAP1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OBa226511 | |
Clone ID Related Accession (Same CDS sequence) | XM_005220746.4 | |
Accession Version | XM_005220746.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 4266bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-05-06 | |
Organism | Bos taurus(cattle) | |
Product | contactin-associated protein 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037346.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On May 7, 2018 this sequence version replaced XM_005220746.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Bos taurus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGTACAGC ACACAGGGAG AAGACATAAA CTCTTTTCCA GACTCTTCCT AGCATATCCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005220803.2 |
CDS | 114..4379 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005220746.4 |
1 | ATGGTACAGC ACACAGGGAG AAGACATAAA CTCTTTTCCA GACTCTTCCT AGCATATCCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OBa226512 | |
Clone ID Related Accession (Same CDS sequence) | XM_005220747.4 | |
Accession Version | XM_005220747.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 4149bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-05-06 | |
Organism | Bos taurus(cattle) | |
Product | contactin-associated protein 1 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037346.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On May 7, 2018 this sequence version replaced XM_005220747.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Bos taurus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGGGTTG GGATCCATGC AGTATTTGGT GAGCCAAATC GTACAGATGA CGGCTGCGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005220804.2 |
CDS | 242..4390 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005220747.4 |
1 | ATGGGGGTTG GGATCCATGC AGTATTTGGT GAGCCAAATC GTACAGATGA CGGCTGCGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OBa226513 | |
Clone ID Related Accession (Same CDS sequence) | XM_024980374.1 | |
Accession Version | XM_024980374.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 3462bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-05-06 | |
Organism | Bos taurus(cattle) | |
Product | contactin-associated protein 1 isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037346.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Bos taurus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGCCTGG GCAGCAGCCC CATCCAGCCA AGGCCGGGTC ACACGACCGT GAGCGCTGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_024836142.1 |
CDS | 834..4295 |
Translation |
Target ORF information:
Target ORF information:
|
XM_024980374.1 |
1 | ATGAGCCTGG GCAGCAGCCC CATCCAGCCA AGGCCGGGTC ACACGACCGT GAGCGCTGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OBa36538 | |
Clone ID Related Accession (Same CDS sequence) | NM_001206895.1 | |
Accession Version | NM_001206895.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 4167bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-06-02 | |
Organism | Bos taurus(cattle) | |
Product | contactin-associated protein 1 precursor | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from NKLS02000019.1, DV912164.1, CO882775.1, DV889570.1, DV822158.1, DV882319.1 and AJ693884.1. On or before May 12, 2011 this sequence version replaced XM_002695997.1, XM_001788969.1. Sequence Note: This RefSeq record was created from transcript and genomic sequence data. The genomic coordinates used for the transcript record were predicted based on cow transcript alignments and on homologous protein alignment with human NP_003623.1. ##Evidence-Data-START## Transcript exon combination :: SRR5571254.13384.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN03145413, SAMN03145415 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGATGCGTC TCCGGCTTTT CTGCATCCTA CTCGCCGCGG TCTCAGGAGC CCGGGGCTGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001193824.1 |
CDS | 1..4167 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001206895.1 |
1 | ATGATGCGTC TCCGGCTTTT CTGCATCCTA CTCGCCGCGG TCTCAGGAGC CCGGGGCTGG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OBa30045 | |
Clone ID Related Accession (Same CDS sequence) | XM_005220746.3 | |
Accession Version | XM_005220746.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 4266bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-01-25 | |
Organism | Bos taurus(cattle) | |
Product | contactin-associated protein 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003104496.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jan 26, 2016 this sequence version replaced XM_005220746.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Bos taurus Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGTACAGC ACACAGGGAG AAGACATAAA CTCTTTTCCA GACTCTTCCT AGCATATCCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005220803.1 |
CDS | 219..4484 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005220746.3 |
1 | ATGGTACAGC ACACAGGGAG AAGACATAAA CTCTTTTCCA GACTCTTCCT AGCATATCCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OBa30046 | |
Clone ID Related Accession (Same CDS sequence) | XM_005220747.3 | |
Accession Version | XM_005220747.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 4149bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-01-25 | |
Organism | Bos taurus(cattle) | |
Product | contactin-associated protein 1 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003104496.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jan 26, 2016 this sequence version replaced XM_005220747.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Bos taurus Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGGGTTG GGATCCATGC AGTATTTGGT GAGCCAAATC GTACAGATGA CGGCTGCGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005220804.1 |
CDS | 318..4466 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005220747.3 |
1 | ATGGGGGTTG GGATCCATGC AGTATTTGGT GAGCCAAATC GTACAGATGA CGGCTGCGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
A whole-genome assembly of the domestic cow, Bos taurus. |
A second generation radiation hybrid map to aid the assembly of the bovine genome sequence. |