atp6v1d cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	atp6v1d
Entrez Gene ID	393935
Full Name	ATPase H+ transporting V1 subunit D
Synonyms	zgc:55524
General protein information	Preferred Names ATPase H+ transporting V1 subunit D Names V-type proton ATPase subunit D ATPase, H+ transporting, lysosomal V1 subunit D
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001167954.1	NP_001161426.1	V-type proton ATPase subunit D

Pathways from BioSystems

Homologies

Bos taurus (cattle)	ATP6V1D	NP_001068609.2
Gallus gallus (chicken)	ATP6V1D	NP_001264368.1
Kluyveromyces lactis	KLLA0A01991g	XP_451088.1
Homo sapiens (human)	ATP6V1D	NP_057078.1
Mus musculus (house mouse)	Atp6v1d	NP_076210.1
Drosophila melanogaster (fruit fly)	Vha36-1	NP_651987.1
Schizosaccharomyces pombe (fission yeast)	vma8	NP_588513.1
Neurospora crassa	NCU08035	XP_962705.2
Arabidopsis thaliana (thale cress)	AT3G58730	NP_191432.1
Oryza sativa (rice)	Os04g0643100	NP_001054048.1
Pan troglodytes (chimpanzee)	ATP6V1D	XP_001136552.1
Saccharomyces cerevisiae (baker's yeast)	VMA8	NP_010863.1
Rattus norvegicus (Norway rat)	Atp6v1d	NP_955418.1
Danio rerio (zebrafish)	atp6v1d	NP_001161426.1
Caenorhabditis elegans (roundworm)	vha-14	NP_499094.1
Eremothecium gossypii	AGOS_AAR130C	NP_982672.1
	ATP6V1D	XP_001106329.1
Canis lupus familiaris (dog)	ATP6V1D	XP_537484.2
Anopheles gambiae (African malaria mosquito)	AgaP_AGAP010298	XP_318202.3
Magnaporthe oryzae (rice blast fungus)	MGG_07086	XP_003715275.1
Xenopus tropicalis (tropical clawed frog)	atp6v1d	NP_001017075.1

Gene Ontology
Bibliography

Related articles in PubMed

Evolution of complexity in the zebrafish synapse proteome.
Bay?s ?, Collins MO, Reig-Viader R, Gou G, Goulding D, Izquierdo A, Choudhary JS, Emes RD, Grant SG
Nature communications814613(2017 Mar)

The circadian clock regulates autophagy directly through the nuclear hormone receptor Nr1d1/Rev-erb? and indirectly via Cebpb/(C/ebp?) in zebrafish.
Huang G, Zhang F, Ye Q, Wang H
Autophagy12(8)1292-309(2016 Aug)

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

A SNX10/V-ATPase pathway regulates ciliogenesis in vitro and in vivo.
Chen Y, Wu B, Xu L, Li H, Xia J, Yin W, Li Z, Shi D, Li S, Lin S, Shu X, Pei D
Cell research22(2)333-45(2012 Feb)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following atp6v1d gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the atp6v1d cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa03747	NM_001167954.1 Latest version!	Danio rerio ATPase H+ transporting V1 subunit D (atp6v1d), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$174.30 $249.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

atp6v1d ( NM_001167954.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001161426.1 Danio rerio ATPase H+ transporting V1 subunit D (atp6v1d), mRNA.

Price & Availability↑

CloneID	ODa03747
Clone ID Related Accession (Same CDS sequence)	NM_001167954.1
Accession Version	NM_001167954.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 747bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-01-26
Organism	Danio rerio(zebrafish)
Product	V-type proton ATPase subunit D
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AL928824.13. On or before Oct 1, 2011 this sequence version replaced NM_200960.1, XM_682576.2. ##Evidence-Data-START## Transcript exon combination :: BC045370.1, EH501182.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END##

ATGTCGGGAA AAGAGCGGAT CGACATTTTC CCCTCTAGAA TGGCTCAGAC CATTATGAAA 
GCTCGTCTGA AAGGAGCTCA GACTGGCCGC AGTTTGCTGA AGAAGAAATC AGACGCTCTG 
TCAATGCGAT TTCGGCAAAT TCTGCGAAAA ATCATTGAGA CTAAGACGCT GATGGGAGAG 
GTGATGAGAG AAGCTGCCTT TTCATTAGCT GAAGCTAAAT TTGCTGCTGG TGACTTCAGT 
ACTACAGTCA TTCAGAATGT GAACAAGGCC CAGGTGAAGG TCAGAGCAAA AAAAGACAAC 
GTTGCAGGAG TGACTCTGCC AGTGTTTGAG CATTATCAGG AGGGAGGAGA CAGTTATGAG 
CTGACGGGTC TGGCCAGAGG TGGAGAACAG CTGTCTCGAC TCAAGAGGAA CTACGCTAAA 
GCTGTGGAGC TGCTGGTGGA GCTCGCCTCA CTGCAGACCT CTTTTGTGAC TCTGGACGAG 
GCTATAAAGA TCACGAACCG GCGTGTGAAT GCCATCGAGC ATGTGATTAT TCCCAGAATT 
GAGCGCACTC TCACCTACAT CATTACTGAG CTGGATGAGC GAGAGAGAGA GGAGTTTTAC 
AGGCTGAAGA AGATCCAGGA GAAGAAGAAG CAGCTCCGCG AGCGGACGGA GAAGGAGATC 
GCCAAACGCC TGGCAGCTTT AGGGCCGATT GCAGAGCCCA CAAACATGCT GACGGAGGAG 
GCCGATGAGG ACCTGCTGTT TGAATGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001161426.1
CDS	179..925
Translation	MSGKERIDIFPSRMAQTIMKARLKGAQTGRSLLKKKSDALSMRFRQILRKIIETKTLMGEVMREAAFSLAEAKFAAGDFSTTVIQNVNKAQVKVRAKKDNVAGVTLPVFEHYQEGGDSYELTGLARGGEQLSRLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPRIERTLTYIITELDEREREEFYRLKKIQEKKKQLRERTEKEIAKRLAALGPIAEPTNMLTEEADEDLLFE

Target ORF information:

RefSeq Version	NM_001167954.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio ATPase H+ transporting V1 subunit D (atp6v1d), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001167954.1

ORF Insert Sequence:

ATGTCGGGAA AAGAGCGGAT CGACATTTTC CCCTCTAGAA TGGCTCAGAC CATTATGAAA 
GCTCGTCTGA AAGGAGCTCA GACTGGCCGC AGTTTGCTGA AGAAGAAATC AGACGCTCTG 
TCAATGCGAT TTCGGCAAAT TCTGCGAAAA ATCATTGAGA CTAAGACGCT GATGGGAGAG 
GTGATGAGAG AAGCTGCCTT TTCATTAGCT GAAGCTAAAT TTGCTGCTGG TGACTTCAGT 
ACTACAGTCA TTCAGAATGT GAACAAGGCC CAGGTGAAGG TCAGAGCAAA AAAAGACAAC 
GTTGCAGGAG TGACTCTGCC AGTGTTTGAG CATTATCAGG AGGGAGGAGA CAGTTATGAG 
CTGACGGGTC TGGCCAGAGG TGGAGAACAG CTGTCTCGAC TCAAGAGGAA CTACGCTAAA 
GCTGTGGAGC TGCTGGTGGA GCTCGCCTCA CTGCAGACCT CTTTTGTGAC TCTGGACGAG 
GCTATAAAGA TCACGAACCG GCGTGTGAAT GCCATCGAGC ATGTGATTAT TCCCAGAATT 
GAGCGCACTC TCACCTACAT CATTACTGAG CTGGATGAGC GAGAGAGAGA GGAGTTTTAC 
AGGCTGAAGA AGATCCAGGA GAAGAAGAAG CAGCTCCGCG AGCGGACGGA GAAGGAGATC 
GCCAAACGCC TGGCAGCTTT AGGGCCGATT GCAGAGCCCA CAAACATGCT GACGGAGGAG 
GCCGATGAGG ACCTGCTGTT TGAATGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Evolution of complexity in the zebrafish synapse proteome.
Nature communications814613(2017 Mar)
Bay?s ?,Collins MO,Reig-Viader R,Gou G,Goulding D,Izquierdo A,Choudhary JS,Emes RD,Grant SG

The circadian clock regulates autophagy directly through the nuclear hormone receptor Nr1d1/Rev-erb? and indirectly via Cebpb/(C/ebp?) in zebrafish.
Autophagy12(8)1292-309(2016 Aug)
Huang G,Zhang F,Ye Q,Wang H

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

A SNX10/V-ATPase pathway regulates ciliogenesis in vitro and in vivo.
Cell research22(2)333-45(2012 Feb)
Chen Y,Wu B,Xu L,Li H,Xia J,Yin W,Li Z,Shi D,Li S,Lin S,Shu X,Pei D

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atp6v1d cDNA ORF clone, Danio rerio(zebrafish)

Gene

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Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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