Atp6v1d cDNA ORF clone, Mus musculus(house mouse)

Gene
Clones
gRNAs

Summary

Gene Symbol	Atp6v1d
Entrez Gene ID	73834
Full Name	ATPase, H+ transporting, lysosomal V1 subunit D
Synonyms	1110004P10Rik,Atp6m,VATD,Vma8
General protein information	Preferred Names ATPase, H+ transporting, lysosomal V1 subunit D Names V-type proton ATPase subunit D ATPase, H+ transporting lysosomal (vacuolar proton pump) ATPase, H+ transporting, V1 subunit D ATPase, H+ transporting, lysosomal 34kD, V1 subunit D V-ATPase 28 kDa accessory protein V-ATPase subunit D lysosomal 34kDa vacuolar proton pump subunit D
Gene Type	protein-coding
Organism	Mus musculus(house mouse)
Genome	Chromosome: 12 Map Location: 12 C3\|12 35.51 cM

mRNA and Protein(s)

mRNA	Protein	Name
NM_023721.2	NP_076210.1	V-type proton ATPase subunit D
XM_030246956.1	XP_030102816.1	V-type proton ATPase subunit D isoform X1

Pathways from BioSystems

Homologies

Bos taurus (cattle)	ATP6V1D	NP_001068609.2
Gallus gallus (chicken)	ATP6V1D	NP_001264368.1
Kluyveromyces lactis	KLLA0A01991g	XP_451088.1
Homo sapiens (human)	ATP6V1D	NP_057078.1
Mus musculus (house mouse)	Atp6v1d	NP_076210.1
Drosophila melanogaster (fruit fly)	Vha36-1	NP_651987.1
Schizosaccharomyces pombe (fission yeast)	vma8	NP_588513.1
Neurospora crassa	NCU08035	XP_962705.2
Arabidopsis thaliana (thale cress)	AT3G58730	NP_191432.1
Oryza sativa (rice)	Os04g0643100	NP_001054048.1
Pan troglodytes (chimpanzee)	ATP6V1D	XP_001136552.1
Saccharomyces cerevisiae (baker's yeast)	VMA8	NP_010863.1
Rattus norvegicus (Norway rat)	Atp6v1d	NP_955418.1
Danio rerio (zebrafish)	atp6v1d	NP_001161426.1
Caenorhabditis elegans (roundworm)	vha-14	NP_499094.1
Eremothecium gossypii	AGOS_AAR130C	NP_982672.1
	ATP6V1D	XP_001106329.1
Canis lupus familiaris (dog)	ATP6V1D	XP_537484.2
Anopheles gambiae (African malaria mosquito)	AgaP_AGAP010298	XP_318202.3
Magnaporthe oryzae (rice blast fungus)	MGG_07086	XP_003715275.1
Xenopus tropicalis (tropical clawed frog)	atp6v1d	NP_001017075.1

Gene Ontology
Bibliography

Related articles in PubMed

High-throughput discovery of novel developmental phenotypes.
Dickinson ME, Flenniken AM, Ji X, Teboul L, Wong MD, White JK, Meehan TF, Weninger WJ, Westerberg H, Adissu H, Baker CN, Bower L, Brown JM, Caddle LB, Chiani F, Clary D, Cleak J, Daly MJ, Denegre JM, Doe B, Dolan ME, Edie SM, Fuchs H, Gailus-Durner V, Galli A, Gambadoro A, Gallegos J, Guo S, Horner NR, Hsu CW, Johnson SJ, Kalaga S, Keith LC, Lanoue L, Lawson TN, Lek M, Mark M, Marschall S, Mason J, McElwee ML, Newbigging S, Nutter LM, Peterson KA, Ramirez-Solis R, Rowland DJ, Ryder E, Samocha KE, Seavitt JR, Selloum M, Szoke-Kovacs Z, Tamura M, Trainor AG, Tudose I, Wakana S, Warren J, Wendling O, West DB, Wong L, Yoshiki A, , , , , , , , , MacArthur DG, Tocchini-Valentini GP, Gao X, Flicek P, Bradley A, Skarnes WC, Justice MJ, Parkinson HE, Moore M, Wells S, Braun RE, Svenson KL, de Angelis MH, Herault Y, Mohun T, Mallon AM, Henkelman RM, Brown SD, Adams DJ, Lloyd KC, McKerlie C, Beaudet AL, Bu?an M, Murray SA
Nature537(7621)508-514(2016 09)

Decreased expression levels of Ifi genes is associated to the increased resistance to spontaneous arthritis disease in mice deficiency of IL-1RA.
Liu X, Jiao Y, Cao Y, Deng N, Ma Y, Hasty KA, Kang A, Chen H, Stuart JM, Gu W
BMC immunology17(1)25(2016 08)

cDNA cloning, chromosomal localization and evolutionary analysis of mouse vacuolar ATPase subunit D, Atp6m.
Kennell JA, Richards NW, Schaner PE, Gumucio DL
Cytogenetics and cell genetics92(3-4)337-41(2001)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following Atp6v1d gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Atp6v1d cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OMu05927	NM_023721.2 Latest version!	Mus musculus ATPase, H+ transporting, lysosomal V1 subunit D (Atp6v1d), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$188.30 $269.00
OMu05927	XM_030246956.1 Latest version!	Mus musculus ATPase, H+ transporting, lysosomal V1 subunit D (Atp6v1d), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$139.30 $199.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Atp6v1d ( NM_023721.2 ) cDNA ORF clone, Mus musculus(house mouse) -> NP_076210.1 Mus musculus ATPase, H+ transporting, lysosomal V1 subunit D (Atp6v1d), mRNA.

Price & Availability↑

CloneID	OMu05927
Clone ID Related Accession (Same CDS sequence)	NM_023721.2 , XM_030246956.1
Accession Version	NM_023721.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 744bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-01-19
Organism	Mus musculus(house mouse)
Product	V-type proton ATPase subunit D
Comment	Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BY096594.1 and AK147910.1. On Nov 6, 2005 this sequence version replaced NM_023721.1. ##Evidence-Data-START## Transcript exon combination :: BC033457.1, AK147910.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849381, SAMN01164131 [ECO:0000348] ##Evidence-Data-END##

ATGTCGGGCA AAGACCGGAT TGAAATCTTC CCTTCGCGAA TGGCACAGAC CATCATGAAG 
GCTCGATTAA AAGGAGCACA GACTGGTCGA AACCTTCTGA AGAAAAAGTC TGATGCCTTA 
ACTCTTCGAT TTCGACAGAT CCTGAAGAAG ATAATAGAGA CTAAAATGCT GATGGGTGAA 
GTGATGAGAG AAGCTGCCTT CTCATTGGCT GAGGCCAAAT TCACAGCAGG GGACTTCAGC 
ACCACAGTTA TCCAAAATGT AAATAAAGCC CAAGTGAAGA TCAGAGCAAA GAAAGACAAT 
GTAGCAGGTG TTACCTTGCC AGTGTTTGAA CATTACCACG AAGGAACTGA CAGCTATGAA 
CTGACCGGTT TAGCCAGAGG TGGGGAGCAG CTGGCTAAAC TAAAGCGGAA TTATGCCAAA 
GCAGTGGAAC TACTGGTGGA ACTGGCTTCC CTGCAGACTT CCTTTGTTAC CCTGGATGAA 
GCCATTAAAA TCACCAACAG GCGTGTTAAT GCCATTGAGC ATGTCATTAT TCCCCGGATT 
GAACGCACCC TTGCCTATAT CATCACAGAA CTGGATGAGA GAGAGCGAGA AGAATTCTAT 
AGGTTAAAGA AAATACAGGA GAAGAAAAAG ATTATCAAGG AAAAATTTGA GAAGGACTTG 
GAGCGGCGGA GAGCAGCTGG AGAGGTGATG GAGCCTGCCA ACCTGCTGGC TGAAGAGAAG 
GATGAAGACC TGCTGTTCGA ATAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_076210.1
CDS	180..923
Translation	MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGEVMREAAFSLAEAKFTAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPRIERTLAYIITELDEREREEFYRLKKIQEKKKIIKEKFEKDLERRRAAGEVMEPANLLAEEKDEDLLFE

Target ORF information:

RefSeq Version	NM_023721.2
Organism	Mus musculus(house mouse)
Definition	Mus musculus ATPase, H+ transporting, lysosomal V1 subunit D (Atp6v1d), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_023721.2

ORF Insert Sequence:

ATGTCGGGCA AAGACCGGAT TGAAATCTTC CCTTCGCGAA TGGCACAGAC CATCATGAAG 
GCTCGATTAA AAGGAGCACA GACTGGTCGA AACCTTCTGA AGAAAAAGTC TGATGCCTTA 
ACTCTTCGAT TTCGACAGAT CCTGAAGAAG ATAATAGAGA CTAAAATGCT GATGGGTGAA 
GTGATGAGAG AAGCTGCCTT CTCATTGGCT GAGGCCAAAT TCACAGCAGG GGACTTCAGC 
ACCACAGTTA TCCAAAATGT AAATAAAGCC CAAGTGAAGA TCAGAGCAAA GAAAGACAAT 
GTAGCAGGTG TTACCTTGCC AGTGTTTGAA CATTACCACG AAGGAACTGA CAGCTATGAA 
CTGACCGGTT TAGCCAGAGG TGGGGAGCAG CTGGCTAAAC TAAAGCGGAA TTATGCCAAA 
GCAGTGGAAC TACTGGTGGA ACTGGCTTCC CTGCAGACTT CCTTTGTTAC CCTGGATGAA 
GCCATTAAAA TCACCAACAG GCGTGTTAAT GCCATTGAGC ATGTCATTAT TCCCCGGATT 
GAACGCACCC TTGCCTATAT CATCACAGAA CTGGATGAGA GAGAGCGAGA AGAATTCTAT 
AGGTTAAAGA AAATACAGGA GAAGAAAAAG ATTATCAAGG AAAAATTTGA GAAGGACTTG 
GAGCGGCGGA GAGCAGCTGG AGAGGTGATG GAGCCTGCCA ACCTGCTGGC TGAAGAGAAG 
GATGAAGACC TGCTGTTCGA ATAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

Atp6v1d ( XM_030246956.1 ) cDNA ORF clone, Mus musculus(house mouse) -> XP_030102816.1 Mus musculus ATPase, H+ transporting, lysosomal V1 subunit D (Atp6v1d), transcript variant X1, mRNA.

Price & Availability↑

CloneID	OMu05927
Clone ID Related Accession (Same CDS sequence)	NM_023721.2 , XM_030246956.1
Accession Version	XM_030246956.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 744bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-08-07
Organism	Mus musculus(house mouse)
Product	V-type proton ATPase subunit D isoform X1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000078.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGTCGGGCA AAGACCGGAT TGAAATCTTC CCTTCGCGAA TGGCACAGAC CATCATGAAG 
GCTCGATTAA AAGGAGCACA GACTGGTCGA AACCTTCTGA AGAAAAAGTC TGATGCCTTA 
ACTCTTCGAT TTCGACAGAT CCTGAAGAAG ATAATAGAGA CTAAAATGCT GATGGGTGAA 
GTGATGAGAG AAGCTGCCTT CTCATTGGCT GAGGCCAAAT TCACAGCAGG GGACTTCAGC 
ACCACAGTTA TCCAAAATGT AAATAAAGCC CAAGTGAAGA TCAGAGCAAA GAAAGACAAT 
GTAGCAGGTG TTACCTTGCC AGTGTTTGAA CATTACCACG AAGGAACTGA CAGCTATGAA 
CTGACCGGTT TAGCCAGAGG TGGGGAGCAG CTGGCTAAAC TAAAGCGGAA TTATGCCAAA 
GCAGTGGAAC TACTGGTGGA ACTGGCTTCC CTGCAGACTT CCTTTGTTAC CCTGGATGAA 
GCCATTAAAA TCACCAACAG GCGTGTTAAT GCCATTGAGC ATGTCATTAT TCCCCGGATT 
GAACGCACCC TTGCCTATAT CATCACAGAA CTGGATGAGA GAGAGCGAGA AGAATTCTAT 
AGGTTAAAGA AAATACAGGA GAAGAAAAAG ATTATCAAGG AAAAATTTGA GAAGGACTTG 
GAGCGGCGGA GAGCAGCTGG AGAGGTGATG GAGCCTGCCA ACCTGCTGGC TGAAGAGAAG 
GATGAAGACC TGCTGTTCGA ATAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_030102816.1
CDS	312..1055
Translation	MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGEVMREAAFSLAEAKFTAGDFSTTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDEAIKITNRRVNAIEHVIIPRIERTLAYIITELDEREREEFYRLKKIQEKKKIIKEKFEKDLERRRAAGEVMEPANLLAEEKDEDLLFE

Target ORF information:

RefSeq Version	XM_030246956.1
Organism	Mus musculus(house mouse)
Definition	Mus musculus ATPase, H+ transporting, lysosomal V1 subunit D (Atp6v1d), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_030246956.1

ORF Insert Sequence:

ATGTCGGGCA AAGACCGGAT TGAAATCTTC CCTTCGCGAA TGGCACAGAC CATCATGAAG 
GCTCGATTAA AAGGAGCACA GACTGGTCGA AACCTTCTGA AGAAAAAGTC TGATGCCTTA 
ACTCTTCGAT TTCGACAGAT CCTGAAGAAG ATAATAGAGA CTAAAATGCT GATGGGTGAA 
GTGATGAGAG AAGCTGCCTT CTCATTGGCT GAGGCCAAAT TCACAGCAGG GGACTTCAGC 
ACCACAGTTA TCCAAAATGT AAATAAAGCC CAAGTGAAGA TCAGAGCAAA GAAAGACAAT 
GTAGCAGGTG TTACCTTGCC AGTGTTTGAA CATTACCACG AAGGAACTGA CAGCTATGAA 
CTGACCGGTT TAGCCAGAGG TGGGGAGCAG CTGGCTAAAC TAAAGCGGAA TTATGCCAAA 
GCAGTGGAAC TACTGGTGGA ACTGGCTTCC CTGCAGACTT CCTTTGTTAC CCTGGATGAA 
GCCATTAAAA TCACCAACAG GCGTGTTAAT GCCATTGAGC ATGTCATTAT TCCCCGGATT 
GAACGCACCC TTGCCTATAT CATCACAGAA CTGGATGAGA GAGAGCGAGA AGAATTCTAT 
AGGTTAAAGA AAATACAGGA GAAGAAAAAG ATTATCAAGG AAAAATTTGA GAAGGACTTG 
GAGCGGCGGA GAGCAGCTGG AGAGGTGATG GAGCCTGCCA ACCTGCTGGC TGAAGAGAAG 
GATGAAGACC TGCTGTTCGA ATAG

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

High-throughput discovery of novel developmental phenotypes.
Nature537(7621)508-514(2016 09)
Dickinson ME,Flenniken AM,Ji X,Teboul L,Wong MD,White JK,Meehan TF,Weninger WJ,Westerberg H,Adissu H,Baker CN,Bower L,Brown JM,Caddle LB,Chiani F,Clary D,Cleak J,Daly MJ,Denegre JM,Doe B,Dolan ME,Edie SM,Fuchs H,Gailus-Durner V,Galli A,Gambadoro A,Gallegos J,Guo S,Horner NR,Hsu CW,Johnson SJ,Kalaga S,Keith LC,Lanoue L,Lawson TN,Lek M,Mark M,Marschall S,Mason J,McElwee ML,Newbigging S,Nutter LM,Peterson KA,Ramirez-Solis R,Rowland DJ,Ryder E,Samocha KE,Seavitt JR,Selloum M,Szoke-Kovacs Z,Tamura M,Trainor AG,Tudose I,Wakana S,Warren J,Wendling O,West DB,Wong L,Yoshiki A,,,,,,,,,MacArthur DG,Tocchini-Valentini GP,Gao X,Flicek P,Bradley A,Skarnes WC,Justice MJ,Parkinson HE,Moore M,Wells S,Braun RE,Svenson KL,de Angelis MH,Herault Y,Mohun T,Mallon AM,Henkelman RM,Brown SD,Adams DJ,Lloyd KC,McKerlie C,Beaudet AL,Bu?an M,Murray SA

Decreased expression levels of Ifi genes is associated to the increased resistance to spontaneous arthritis disease in mice deficiency of IL-1RA.
BMC immunology17(1)25(2016 08)
Liu X,Jiao Y,Cao Y,Deng N,Ma Y,Hasty KA,Kang A,Chen H,Stuart JM,Gu W

cDNA cloning, chromosomal localization and evolutionary analysis of mouse vacuolar ATPase subunit D, Atp6m.
Cytogenetics and cell genetics92(3-4)337-41(2001)
Kennell JA,Richards NW,Schaner PE,Gumucio DL