Gene Symbol | Cnot4 |
Entrez Gene ID | 53621 |
Full Name | CCR4-NOT transcription complex, subunit 4 |
Synonyms | Not4,Not4h,Not4hp |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
ORF » Species Summary » Mus musculus » Cnot4 cDNA ORF clone
Gene Symbol | Cnot4 |
Entrez Gene ID | 53621 |
Full Name | CCR4-NOT transcription complex, subunit 4 |
Synonyms | Not4,Not4h,Not4hp |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_011241407.1 | XP_011239709.1 | CCR4-NOT transcription complex subunit 4 isoform X1 |
NM_001164411.1 | NP_001157883.1 | CCR4-NOT transcription complex subunit 4 isoform 3 |
NM_001164414.1 | NP_001157886.1 | CCR4-NOT transcription complex subunit 4 isoform 5 |
NM_001164413.1 | NP_001157885.1 | CCR4-NOT transcription complex subunit 4 isoform 1 |
NM_016877.4 | NP_058573.3 | CCR4-NOT transcription complex subunit 4 isoform 2 |
XM_011241407.2 | XP_011239709.1 | CCR4-NOT transcription complex subunit 4 isoform X1 |
XM_011241408.3 | XP_011239710.1 | CCR4-NOT transcription complex subunit 4 isoform X1 |
XM_011241408.2 | XP_011239710.1 | CCR4-NOT transcription complex subunit 4 isoform X1 |
NM_001164412.1 | NP_001157884.1 | CCR4-NOT transcription complex subunit 4 isoform 4 |
Homo sapiens (human) | CNOT4 | NP_001177779.1 |
Mus musculus (house mouse) | Cnot4 | NP_001157885.1 |
Danio rerio (zebrafish) | LOC569055 | XP_697509.2 |
Canis lupus familiaris (dog) | CNOT4 | XP_005629640.1 |
Bos taurus (cattle) | CNOT4 | NP_001030509.1 |
Rattus norvegicus (Norway rat) | Cnot4 | NP_001032871.1 |
Gallus gallus (chicken) | CNOT4 | NP_001012829.1 |
Danio rerio (zebrafish) | zgc:63566 | NP_957463.1 |
Pan troglodytes (chimpanzee) | CNOT4 | XP_001145725.1 |
CNOT4 | XP_001105643.1 | |
Xenopus tropicalis (tropical clawed frog) | cnot4 | NP_001025571.1 |
A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58.
Yokoyama S, Ito Y, Ueno-Kudoh H, Shimizu H, Uchibe K, Albini S, Mitsuoka K, Miyaki S, Kiso M, Nagai A, Hikata T, Osada T, Fukuda N, Yamashita S, Harada D, Mezzano V, Kasai M, Puri PL, Hayashizaki Y, Okado H, Hashimoto M, Asahara H
Developmental cell17(6)836-48(2009 Dec)
Genomic analysis of mouse retinal development.
Blackshaw S, Harpavat S, Trimarchi J, Cai L, Huang H, Kuo WP, Weber G, Lee K, Fraioli RE, Cho SH, Yung R, Asch E, Ohno-Machado L, Wong WH, Cepko CL
PLoS biology2(9)E247(2004 Sep)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Cnot4 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Cnot4 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMu09792 | |
Clone ID Related Accession (Same CDS sequence) | NM_001164412.1 | |
Accession Version | NM_001164412.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1920bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-22 | |
Organism | Mus musculus(house mouse) | |
Product | CCR4-NOT transcription complex subunit 4 isoform 4 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC140110.2 and BC048243.1. Transcript Variant: This variant (4) lacks an in-frame exon in the 3' coding region, compared to variant 1. The encoded isoform (4) is shorter than isoform 1. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: BC048243.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164135, SAMN01164138 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGTCTCGCA GTCCTGATGC AAAGGAAGAC CCTGTGGAAT GCCCTCTTTG CATGGAGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001157884.1 |
CDS | 329..2248 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001164412.1 |
1 | ATGTCTCGCA GTCCTGATGC AAAGGAAGAC CCTGTGGAAT GCCCTCTTTG CATGGAGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu09790 | |
Clone ID Related Accession (Same CDS sequence) | NM_001164411.1 | |
Accession Version | NM_001164411.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1719bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-22 | |
Organism | Mus musculus(house mouse) | |
Product | CCR4-NOT transcription complex subunit 4 isoform 3 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC140110.2, AK075887.1, AK028190.1 and AW125319.1. Transcript Variant: This variant (3) differs in the 3' UTR and coding region, compared to variant 1. The encoded isoform (3) is shorter and has a distinct C-terminus compared to isoform 1. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: AK165997.1, AK075887.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164135, SAMN01164138 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGTCTCGCA GTCCTGATGC AAAGGAAGAC CCTGTGGAAT GCCCTCTTTG CATGGAGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001157883.1 |
CDS | 329..2047 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001164411.1 |
1 | ATGTCTCGCA GTCCTGATGC AAAGGAAGAC CCTGTGGAAT GCCCTCTTTG CATGGAGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu09795 | |
Clone ID Related Accession (Same CDS sequence) | NM_001164414.1 | |
Accession Version | NM_001164414.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1929bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-21 | |
Organism | Mus musculus(house mouse) | |
Product | CCR4-NOT transcription complex subunit 4 isoform 5 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC140110.2 and BC048243.1. Transcript Variant: This variant (5) has multiple differences, compared to variant 1. The encoded isoform (5) is shorter than isoform 1. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: AK144760.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164138, SAMN01164139 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGTCTCGCA GTCCTGATGC AAAGGAAGAC CCTGTGGAAT GCCCTCTTTG CATGGAGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001157886.1 |
CDS | 329..2257 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001164414.1 |
1 | ATGTCTCGCA GTCCTGATGC AAAGGAAGAC CCTGTGGAAT GCCCTCTTTG CATGGAGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu10717 | |
Clone ID Related Accession (Same CDS sequence) | NM_016877.4 | |
Accession Version | NM_016877.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1728bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-22 | |
Organism | Mus musculus(house mouse) | |
Product | CCR4-NOT transcription complex subunit 4 isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC140110.2, AK032248.1 and AW125319.1. On Sep 1, 2009 this sequence version replaced NM_016877.3. Transcript Variant: This variant (2) has multiple differences, compared to variant 1. The encoded isoform (2) is shorter and has a distinct C-terminus compared to isoform 1. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: AK029753.1, AK032248.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164138, SAMN01164139 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGTCTCGCA GTCCTGATGC AAAGGAAGAC CCTGTGGAAT GCCCTCTTTG CATGGAGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_058573.3 |
CDS | 329..2056 |
Translation |
Target ORF information:
Target ORF information:
|
NM_016877.4 |
1 | ATGTCTCGCA GTCCTGATGC AAAGGAAGAC CCTGTGGAAT GCCCTCTTTG CATGGAGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu09794 | |
Clone ID Related Accession (Same CDS sequence) | NM_001164413.1 | |
Accession Version | NM_001164413.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2133bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-21 | |
Organism | Mus musculus(house mouse) | |
Product | CCR4-NOT transcription complex subunit 4 isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC140110.2 and BC048243.1. Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1). Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: BC058778.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164142, SAMN01164143 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGTCTCGCA GTCCTGATGC AAAGGAAGAC CCTGTGGAAT GCCCTCTTTG CATGGAGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001157885.1 |
CDS | 329..2461 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001164413.1 |
1 | ATGTCTCGCA GTCCTGATGC AAAGGAAGAC CCTGTGGAAT GCCCTCTTTG CATGGAGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu69493 | |
Clone ID Related Accession (Same CDS sequence) | XM_011241407.1 , XM_011241407.2 , XM_011241408.3 , XM_011241408.2 | |
Accession Version | XM_011241407.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2142bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | CCR4-NOT transcription complex subunit 4 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000072.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCTCGCA GTCCTGATGC AAAGGAAGAC CCTGTGGAAT GCCCTCTTTG CATGGAGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011239709.1 |
CDS | 324..2465 |
Translation |
Target ORF information:
Target ORF information:
|
XM_011241407.1 |
1 | ATGTCTCGCA GTCCTGATGC AAAGGAAGAC CCTGTGGAAT GCCCTCTTTG CATGGAGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu69493 | |
Clone ID Related Accession (Same CDS sequence) | XM_011241407.1 , XM_011241407.2 , XM_011241408.3 , XM_011241408.2 | |
Accession Version | XM_011241408.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2142bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | CCR4-NOT transcription complex subunit 4 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000072.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_011241408.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCTCGCA GTCCTGATGC AAAGGAAGAC CCTGTGGAAT GCCCTCTTTG CATGGAGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011239710.1 |
CDS | 203..2344 |
Translation |
Target ORF information:
Target ORF information:
|
XM_011241408.2 |
1 | ATGTCTCGCA GTCCTGATGC AAAGGAAGAC CCTGTGGAAT GCCCTCTTTG CATGGAGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu69493 | |
Clone ID Related Accession (Same CDS sequence) | XM_011241407.1 , XM_011241407.2 , XM_011241408.3 , XM_011241408.2 | |
Accession Version | XM_011241407.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2142bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | CCR4-NOT transcription complex subunit 4 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000072.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_011241407.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCTCGCA GTCCTGATGC AAAGGAAGAC CCTGTGGAAT GCCCTCTTTG CATGGAGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011239709.1 |
CDS | 345..2486 |
Translation |
Target ORF information:
Target ORF information:
|
XM_011241407.2 |
1 | ATGTCTCGCA GTCCTGATGC AAAGGAAGAC CCTGTGGAAT GCCCTCTTTG CATGGAGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu69493 | |
Clone ID Related Accession (Same CDS sequence) | XM_011241407.1 , XM_011241407.2 , XM_011241408.3 , XM_011241408.2 | |
Accession Version | XM_011241408.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2142bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | CCR4-NOT transcription complex subunit 4 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000072.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_011241408.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCTCGCA GTCCTGATGC AAAGGAAGAC CCTGTGGAAT GCCCTCTTTG CATGGAGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011239710.1 |
CDS | 203..2344 |
Translation |
Target ORF information:
Target ORF information:
|
XM_011241408.3 |
1 | ATGTCTCGCA GTCCTGATGC AAAGGAAGAC CCTGTGGAAT GCCCTCTTTG CATGGAGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. |
Genomic analysis of mouse retinal development. |