Gene Symbol | Cpsf4 |
Entrez Gene ID | 54188 |
Full Name | cleavage and polyadenylation specific factor 4 |
Synonyms | 30kDa,C79664 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
ORF » Species Summary » Mus musculus » Cpsf4 cDNA ORF clone
Gene Symbol | Cpsf4 |
Entrez Gene ID | 54188 |
Full Name | cleavage and polyadenylation specific factor 4 |
Synonyms | 30kDa,C79664 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_006504845.2 | XP_006504908.1 | cleavage and polyadenylation specificity factor subunit 4 isoform X1 |
NM_001291249.1 | NP_001278178.1 | cleavage and polyadenylation specificity factor subunit 4 isoform b |
NM_178576.3 | NP_848671.1 | cleavage and polyadenylation specificity factor subunit 4 isoform c |
NM_001374716.1 | NP_001361645.1 | cleavage and polyadenylation specificity factor subunit 4 isoform d |
NM_001291248.1 | NP_001278177.1 | cleavage and polyadenylation specificity factor subunit 4 isoform a |
Homo sapiens (human) | CPSF4 | NP_006684.1 |
Pan troglodytes (chimpanzee) | CPSF4 | XP_519234.3 |
Canis lupus familiaris (dog) | CPSF4 | XP_850149.1 |
Rattus norvegicus (Norway rat) | Cpsf4 | NP_001012351.1 |
Gallus gallus (chicken) | CPSF4 | NP_001264480.1 |
Bos taurus (cattle) | CPSF4 | NP_776367.1 |
Mus musculus (house mouse) | Cpsf4 | NP_848671.1 |
Drosophila melanogaster (fruit fly) | Clp | NP_477156.1 |
Caenorhabditis elegans (roundworm) | cpsf-4 | NP_001023126.1 |
Xenopus tropicalis (tropical clawed frog) | cpsf4 | NP_001007933.1 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP013044 | XP_003436228.1 |
CPSF4 | XP_001094527.1 | |
Danio rerio (zebrafish) | cpsf4 | NP_571084.1 |
Gene expression analysis of the embryonic subplate.
Oeschger FM, Wang WZ, Lee S, Garc?a-Moreno F, Goffinet AM, Arbon?s ML, Rakic S, Moln?r Z
Cerebral cortex (New York, N.Y. : 1991)22(6)1343-59(2012 Jun)
Transcriptome analysis of mouse stem cells and early embryos.
Sharov AA, Piao Y, Matoba R, Dudekula DB, Qian Y, VanBuren V, Falco G, Martin PR, Stagg CA, Bassey UC, Wang Y, Carter MG, Hamatani T, Aiba K, Akutsu H, Sharova L, Tanaka TS, Kimber WL, Yoshikawa T, Jaradat SA, Pantano S, Nagaraja R, Boheler KR, Taub D, Hodes RJ, Longo DL, Schlessinger D, Keller J, Klotz E, Kelsoe G, Umezawa A, Vescovi AL, Rossant J, Kunath T, Hogan BL, Curci A, D'Urso M, Kelso J, Hide W, Ko MS
PLoS biology1(3)E74(2003 Dec)
Drosophila clipper/CPSF 30K is a post-transcriptionally regulated nuclear protein that binds RNA containing GC clusters.
Bai C, Tolias PP
Nucleic acids research26(7)1597-604(1998 Apr)
Cleavage of RNA hairpins mediated by a developmentally regulated CCCH zinc finger protein.
Bai C, Tolias PP
Molecular and cellular biology16(12)6661-7(1996 Dec)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Cpsf4 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Cpsf4 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMu15545 | |
Clone ID Related Accession (Same CDS sequence) | NM_178576.3 | |
Accession Version | NM_178576.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 636bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-10-09 | |
Organism | Mus musculus(house mouse) | |
Product | cleavage and polyadenylation specificity factor subunit 4 isoform c | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC127411.3, AK046064.1 and AI324081.1. On Mar 29, 2014 this sequence version replaced NM_178576.2. Transcript Variant: This variant (3) lacks an alternate in-frame exon in the central coding region, and uses an alternate in-frame splice site in the 3' coding region, compared to variant 1. The encoded isoform (c) is shorter than isoform a. ##Evidence-Data-START## Transcript exon combination :: AK046064.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849376, SAMN00849378 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGCAGGAAA TAATCGCCAG CGTAGATCAC ATCAAGTTCG ACTTGGAGAT CGCCGTGGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_848671.1 |
CDS | 145..780 |
Translation |
Target ORF information:
Target ORF information:
|
NM_178576.3 |
1 | ATGCAGGAAA TAATCGCCAG CGTAGATCAC ATCAAGTTCG ACTTGGAGAT CGCCGTGGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu17061 | |
Clone ID Related Accession (Same CDS sequence) | NM_001291249.1 | |
Accession Version | NM_001291249.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 732bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-10-09 | |
Organism | Mus musculus(house mouse) | |
Product | cleavage and polyadenylation specificity factor subunit 4 isoform b | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC127411.3, AK046064.1, CN723345.1 and AI324081.1. On Mar 29, 2014 this sequence version replaced XM_006504847.1. Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 3' coding region, compared to variant 1, resulting in an isoform (b) that is shorter than isoform a. ##Evidence-Data-START## Transcript exon combination :: BQ886522.1, BI689330.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGCAGGAAA TAATCGCCAG CGTAGATCAC ATCAAGTTCG ACTTGGAGAT CGCCGTGGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001278178.1 |
CDS | 145..876 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001291249.1 |
1 | ATGCAGGAAA TAATCGCCAG CGTAGATCAC ATCAAGTTCG ACTTGGAGAT CGCCGTGGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu17167 | |
Clone ID Related Accession (Same CDS sequence) | NM_001291248.1 | |
Accession Version | NM_001291248.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 735bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-10-09 | |
Organism | Mus musculus(house mouse) | |
Product | cleavage and polyadenylation specificity factor subunit 4 isoform a | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC127411.3, AK046064.1, AF033201.1 and AI324081.1. On Mar 29, 2014 this sequence version replaced XM_006504846.1. Transcript Variant: This variant (1) encodes isoform a. ##Evidence-Data-START## Transcript exon combination :: BQ900084.1, BQ964386.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGCAGGAAA TAATCGCCAG CGTAGATCAC ATCAAGTTCG ACTTGGAGAT CGCCGTGGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001278177.1 |
CDS | 145..879 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001291248.1 |
1 | ATGCAGGAAA TAATCGCCAG CGTAGATCAC ATCAAGTTCG ACTTGGAGAT CGCCGTGGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu36410 | |
Clone ID Related Accession (Same CDS sequence) | XM_006504845.2 , NM_001374716.1 | |
Accession Version | XM_006504845.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 810bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | cleavage and polyadenylation specificity factor subunit 4 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000071.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 9, 2015 this sequence version replaced XM_006504845.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCAGGAAA TAATCGCCAG CGTAGATCAC ATCAAGTTCG ACTTGGAGAT CGCCGTGGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006504908.1 |
CDS | 140..949 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006504845.2 |
1 | ATGCAGGAAA TAATCGCCAG CGTAGATCAC ATCAAGTTCG ACTTGGAGAT CGCCGTGGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu36410 | |
Clone ID Related Accession (Same CDS sequence) | XM_006504845.2 , NM_001374716.1 | |
Accession Version | NM_001374716.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 810bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-10-24 | |
Organism | Mus musculus(house mouse) | |
Product | cleavage and polyadenylation specificity factor subunit 4 isoform d | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC127411.3. On Oct 10, 2019 this sequence version replaced XM_006504845.3. Transcript Variant: This variant (4) represents the longest transcript and encodes the longest isoform (d). Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: SRR7345562.2687361.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849377 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: full length. |
1 | ATGCAGGAAA TAATCGCCAG CGTAGATCAC ATCAAGTTCG ACTTGGAGAT CGCCGTGGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001361645.1 |
CDS | 137..946 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001374716.1 |
1 | ATGCAGGAAA TAATCGCCAG CGTAGATCAC ATCAAGTTCG ACTTGGAGAT CGCCGTGGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Gene expression analysis of the embryonic subplate. |
Transcriptome analysis of mouse stem cells and early embryos. |
Drosophila clipper/CPSF 30K is a post-transcriptionally regulated nuclear protein that binds RNA containing GC clusters. |
Cleavage of RNA hairpins mediated by a developmentally regulated CCCH zinc finger protein. |