mRNA and Protein(s)
mRNA |
Protein |
Name |
XM_002803907.2 |
XP_002803953.1 |
HD domain-containing protein 2 isoform X1 |
NM_001194872.2 |
NP_001181801.1 |
HD domain-containing protein 2 |
XM_028846840.1 |
XP_028702673.1 |
HD domain-containing protein 2 isoform X2 |
NM_001194872.3 |
NP_001181801.1 |
HD domain-containing protein 2 |
Homo sapiens (human) |
HDDC2 |
NP_057147.2 |
Anopheles gambiae (African malaria mosquito) |
AgaP_AGAP010140 |
XP_319297.4 |
Caenorhabditis elegans (roundworm) |
F45F2.9 |
NP_001256098.1 |
Saccharomyces cerevisiae (baker's yeast) |
YBR242W |
NP_009801.1 |
Eremothecium gossypii |
AGOS_AFL036C |
NP_985512.2 |
Schizosaccharomyces pombe (fission yeast) |
SPCC4G3.17 |
NP_587821.1 |
Neurospora crassa |
NCU04470 |
XP_957039.1 |
Oryza sativa (rice) |
Os02g0179100 |
NP_001046081.1 |
|
HDDC2 |
XP_002803953.1 |
Gallus gallus (chicken) |
HDDC2 |
NP_001264847.1 |
Drosophila melanogaster (fruit fly) |
CG11050 |
NP_609052.1 |
Arabidopsis thaliana (thale cress) |
AT2G23820 |
NP_973522.1 |
Xenopus tropicalis (tropical clawed frog) |
hddc2 |
XP_002936040.1 |
Canis lupus familiaris (dog) |
HDDC2 |
XP_005615768.1 |
Mus musculus (house mouse) |
Hddc2 |
NP_081444.1 |
Danio rerio (zebrafish) |
hddc2 |
NP_001038696.1 |
Anopheles gambiae (African malaria mosquito) |
AgaP_AGAP012582 |
XP_306780.4 |
Kluyveromyces lactis |
KLLA0F06798g |
XP_455388.1 |
Rattus norvegicus (Norway rat) |
Hddc2 |
NP_001101930.1 |
Pan troglodytes (chimpanzee) |
HDDC2 |
XP_001152848.2 |
Bos taurus (cattle) |
HDDC2 |
NP_001068869.1 |
Magnaporthe oryzae (rice blast fungus) |
MGG_08021 |
XP_003714974.1 |
Related articles in PubMed
A new rhesus macaque assembly and annotation for next-generation sequencing analyses.
Zimin AV, Cornish AS, Maudhoo MD, Gibbs RM, Zhang X, Pandey S, Meehan DT, Wipfler K, Bosinger SE, Johnson ZP, Tharp GK, Mar?ais G, Roberts M, Ferguson B, Fox HS, Treangen T, Salzberg SL, Yorke JA, Norgren RB Jr
Biology direct9(1)20(2014 Oct)
Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques.
Yan G, Zhang G, Fang X, Zhang Y, Li C, Ling F, Cooper DN, Li Q, Li Y, van Gool AJ, Du H, Chen J, Chen R, Zhang P, Huang Z, Thompson JR, Meng Y, Bai Y, Wang J, Zhuo M, Wang T, Huang Y, Wei L, Li J, Wang Z, Hu H, Yang P, Le L, Stenson PD, Li B, Liu X, Ball EV, An N, Huang Q, Zhang Y, Fan W, Zhang X, Li Y, Wang W, Katze MG, Su B, Nielsen R, Yang H, Wang J, Wang X, Wang J
Nature biotechnology29(11)1019-23(2011 Oct)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following HDDC2 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the HDDC2 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID |
OMb01803 |
Clone ID Related Accession (Same CDS sequence) |
NM_001194872.2
, NM_001194872.3
|
Accession Version |
NM_001194872.2 |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 513bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2019-04-27 |
Organism |
Macaca mulatta(Rhesus monkey) |
Product |
HD domain-containing protein 2 |
Comment |
Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from JSUE03032280.1 and JSUE03032281.1. On Apr 1, 2016 this sequence version replaced NM_001194872.1.
Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments.
##Evidence-Data-START##
RNAseq introns :: mixed/partial sample support SAMEA4688315, SAMEA4688316 [ECO:0000350]
##Evidence-Data-END##
|
1 61 121 181 241 301 361 421 481
| ATGGCTTCGG TCTCCTCTGC GACCTTCTTG GGCCACGGGG CTCGGTCCCT ACTGCAGTTC CTGCGGCTGG TGGGGCAGCT CAAGAGAGTC CCACGGACTG GCTGGGTATA CAGAAATGTC CAAAGGCCGG AGAGCGTGTC AGATCACATG TACCGGATGG CAGTTATGGC TATGGTGATC AAAGATGACC GTCTTAACAA AGACCGGGAA GCTATGAAGC AGATAACCCA ACTACTACCA GAGGACCTCA GAAAGGAGCT CTATGAACTT TGGGAAGAGT ACGAGACCCA ATCTAGTGCA GAAGCCAAAT TTGTGAAGCA GCTAGACCAA TGTGAGATGA TTCTTCAAGC ATCTGAATAT GAAGACCTTG AACACAAACC TGGAAGTCTG CAAGACTTCT ATGATTCCAC AGCAGGAAAA TTCAATCACC CTGAGATAGT CCAGCTTGTT TCTGAACTTG AGGCAGAAAG AAACGCTAAC ATAGCTGCAG CTGCCAGTGA GCCACACTCC TGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
NP_001181801.1 |
CDS | 23..535 |
Translation | |
Target ORF information:
RefSeq Version | NM_001194872.2 |
Organism | Macaca mulatta(Rhesus monkey) |
Definition | Macaca mulatta HD domain containing 2 (HDDC2), mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
NM_001194872.2 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481
| ATGGCTTCGG TCTCCTCTGC GACCTTCTTG GGCCACGGGG CTCGGTCCCT ACTGCAGTTC CTGCGGCTGG TGGGGCAGCT CAAGAGAGTC CCACGGACTG GCTGGGTATA CAGAAATGTC CAAAGGCCGG AGAGCGTGTC AGATCACATG TACCGGATGG CAGTTATGGC TATGGTGATC AAAGATGACC GTCTTAACAA AGACCGGGAA GCTATGAAGC AGATAACCCA ACTACTACCA GAGGACCTCA GAAAGGAGCT CTATGAACTT TGGGAAGAGT ACGAGACCCA ATCTAGTGCA GAAGCCAAAT TTGTGAAGCA GCTAGACCAA TGTGAGATGA TTCTTCAAGC ATCTGAATAT GAAGACCTTG AACACAAACC TGGAAGTCTG CAAGACTTCT ATGATTCCAC AGCAGGAAAA TTCAATCACC CTGAGATAGT CCAGCTTGTT TCTGAACTTG AGGCAGAAAG AAACGCTAAC ATAGCTGCAG CTGCCAGTGA GCCACACTCC TGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
OMb18130 |
Clone ID Related Accession (Same CDS sequence) |
XM_002803907.2
|
Accession Version |
XM_002803907.2 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 615bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2019-04-25 |
Organism |
Macaca mulatta(Rhesus monkey) |
Product |
HD domain-containing protein 2 isoform X1 |
Comment |
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_041757.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process
On Dec 21, 2015 this sequence version replaced XM_002803907.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Macaca mulatta Annotation Release 103
Annotation Version :: 103
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 8.2
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
|
1 61 121 181 241 301 361 421 481 541 601
| ATGGCTTCGG TCTCCTCTGC GACCTTCTTG GGCCACGGGG CTCGGTCCCT ACTGCAGTTC CTGCGGCTGG TGGGGCAGCT CAAGAGAGTC CCACGGACTG GCTGGGTATA CAGAAATGTC CAAAGGCCGG AGAGCGTGTC AGATCACATG TACCGGATGG CAGTTATGGC TATGGTGATC AAAGATGACC GTCTTAACAA AGACCGATGT GTACGCCTAG CCCTCGTTCA TGATATGGCA GAATGCATCG TTGGGGACAT AGCACCAGCA GATAACATCC CCAAGGAAGA AAAACATAGG CGAGAAGAGG AAGCTATGAA GCAGATAACC CAACTACTAC CAGAGGACCT CAGAAAGGAG CTCTATGAAC TTTGGGAAGA GTACGAGACC CAATCTAGTG CAGAAGCCAA ATTTGTGAAG CAGCTAGACC AATGTGAGAT GATTCTTCAA GCATCTGAAT ATGAAGACCT TGAACACAAA CCTGGAAGTC TGCAAGACTT CTATGATTCC ACAGCAGGAA AATTCAATCA CCCTGAGATA GTCCAGCTTG TTTCTGAACT TGAGGCAGAA AGAAACGCTA ACATAGCTGC AGCTGCCAGT GAGCCACACT CCTGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
XP_002803953.1 |
CDS | 202..816 |
Translation | |
Target ORF information:
RefSeq Version | XM_002803907.2 |
Organism | Macaca mulatta(Rhesus monkey) |
Definition | Macaca mulatta HD domain containing 2 (HDDC2), transcript variant X1, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
XM_002803907.2 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601
| ATGGCTTCGG TCTCCTCTGC GACCTTCTTG GGCCACGGGG CTCGGTCCCT ACTGCAGTTC CTGCGGCTGG TGGGGCAGCT CAAGAGAGTC CCACGGACTG GCTGGGTATA CAGAAATGTC CAAAGGCCGG AGAGCGTGTC AGATCACATG TACCGGATGG CAGTTATGGC TATGGTGATC AAAGATGACC GTCTTAACAA AGACCGATGT GTACGCCTAG CCCTCGTTCA TGATATGGCA GAATGCATCG TTGGGGACAT AGCACCAGCA GATAACATCC CCAAGGAAGA AAAACATAGG CGAGAAGAGG AAGCTATGAA GCAGATAACC CAACTACTAC CAGAGGACCT CAGAAAGGAG CTCTATGAAC TTTGGGAAGA GTACGAGACC CAATCTAGTG CAGAAGCCAA ATTTGTGAAG CAGCTAGACC AATGTGAGAT GATTCTTCAA GCATCTGAAT ATGAAGACCT TGAACACAAA CCTGGAAGTC TGCAAGACTT CTATGATTCC ACAGCAGGAA AATTCAATCA CCCTGAGATA GTCCAGCTTG TTTCTGAACT TGAGGCAGAA AGAAACGCTA ACATAGCTGC AGCTGCCAGT GAGCCACACT CCTGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
OMb01803 |
Clone ID Related Accession (Same CDS sequence) |
NM_001194872.2
, NM_001194872.3
|
Accession Version |
NM_001194872.3 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 513bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2019-12-11 |
Organism |
Macaca mulatta(Rhesus monkey) |
Product |
HD domain-containing protein 2 |
Comment |
Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from QNVO02000336.1. On Dec 12, 2019 this sequence version replaced NM_001194872.2.
Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments.
##Evidence-Data-START##
RNAseq introns :: mixed/partial sample support SAMEA4688315, SAMEA4688316 [ECO:0000350]
##Evidence-Data-END##
|
1 61 121 181 241 301 361 421 481
| ATGGCTTCGG TCTCCTCTGC GACCTTCTTG GGCCACGGGG CTCGGTCCCT ACTGCAGTTC CTGCGGCTGG TGGGGCAGCT CAAGAGAGTC CCACGGACTG GCTGGGTATA CAGAAATGTC CAAAGGCCGG AGAGCGTGTC AGATCACATG TACCGGATGG CAGTTATGGC TATGGTGATC AAAGATGACC GTCTTAACAA AGACCGGGAA GCTATGAAGC AGATAACCCA ACTACTACCA GAGGACCTCA GAAAGGAGCT CTATGAACTT TGGGAAGAGT ACGAGACCCA ATCTAGTGCA GAAGCCAAAT TTGTGAAGCA GCTAGACCAA TGTGAGATGA TTCTTCAAGC ATCTGAATAT GAAGACCTTG AACACAAACC TGGAAGTCTG CAAGACTTCT ATGATTCCAC AGCAGGAAAA TTCAATCACC CTGAGATAGT CCAGCTTGTT TCTGAACTTG AGGCAGAAAG AAACGCTAAC ATAGCTGCAG CTGCCAGTGA GCCACACTCC TGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
NP_001181801.1 |
CDS | 23..535 |
Translation | |
Target ORF information:
RefSeq Version | NM_001194872.3 |
Organism | Macaca mulatta(Rhesus monkey) |
Definition | Macaca mulatta HD domain containing 2 (HDDC2), mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
NM_001194872.3 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481
| ATGGCTTCGG TCTCCTCTGC GACCTTCTTG GGCCACGGGG CTCGGTCCCT ACTGCAGTTC CTGCGGCTGG TGGGGCAGCT CAAGAGAGTC CCACGGACTG GCTGGGTATA CAGAAATGTC CAAAGGCCGG AGAGCGTGTC AGATCACATG TACCGGATGG CAGTTATGGC TATGGTGATC AAAGATGACC GTCTTAACAA AGACCGGGAA GCTATGAAGC AGATAACCCA ACTACTACCA GAGGACCTCA GAAAGGAGCT CTATGAACTT TGGGAAGAGT ACGAGACCCA ATCTAGTGCA GAAGCCAAAT TTGTGAAGCA GCTAGACCAA TGTGAGATGA TTCTTCAAGC ATCTGAATAT GAAGACCTTG AACACAAACC TGGAAGTCTG CAAGACTTCT ATGATTCCAC AGCAGGAAAA TTCAATCACC CTGAGATAGT CCAGCTTGTT TCTGAACTTG AGGCAGAAAG AAACGCTAAC ATAGCTGCAG CTGCCAGTGA GCCACACTCC TGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
OMb83754 |
Clone ID Related Accession (Same CDS sequence) |
XM_028846840.1
|
Accession Version |
XM_028846840.1 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 543bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2019-04-25 |
Organism |
Macaca mulatta(Rhesus monkey) |
Product |
HD domain-containing protein 2 isoform X2 |
Comment |
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_041757.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Macaca mulatta Annotation Release 103
Annotation Version :: 103
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 8.2
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
|
1 61 121 181 241 301 361 421 481 541
| ATGATGAAGC AGAGAGTCCC ACGGACTGGC TGGGTATACA GAAATGTCCA AAGGCCGGAG AGCGTGTCAG ATCACATGTA CCGGATGGCA GTTATGGCTA TGGTGATCAA AGATGACCGT CTTAACAAAG ACCGATGTGT ACGCCTAGCC CTCGTTCATG ATATGGCAGA ATGCATCGTT GGGGACATAG CACCAGCAGA TAACATCCCC AAGGAAGAAA AACATAGGCG AGAAGAGGAA GCTATGAAGC AGATAACCCA ACTACTACCA GAGGACCTCA GAAAGGAGCT CTATGAACTT TGGGAAGAGT ACGAGACCCA ATCTAGTGCA GAAGCCAAAT TTGTGAAGCA GCTAGACCAA TGTGAGATGA TTCTTCAAGC ATCTGAATAT GAAGACCTTG AACACAAACC TGGAAGTCTG CAAGACTTCT ATGATTCCAC AGCAGGAAAA TTCAATCACC CTGAGATAGT CCAGCTTGTT TCTGAACTTG AGGCAGAAAG AAACGCTAAC ATAGCTGCAG CTGCCAGTGA GCCACACTCC TGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
XP_028702673.1 |
CDS | 15..557 |
Translation | |
Target ORF information:
RefSeq Version | XM_028846840.1 |
Organism | Macaca mulatta(Rhesus monkey) |
Definition | Macaca mulatta HD domain containing 2 (HDDC2), transcript variant X2, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
XM_028846840.1 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541
| ATGATGAAGC AGAGAGTCCC ACGGACTGGC TGGGTATACA GAAATGTCCA AAGGCCGGAG AGCGTGTCAG ATCACATGTA CCGGATGGCA GTTATGGCTA TGGTGATCAA AGATGACCGT CTTAACAAAG ACCGATGTGT ACGCCTAGCC CTCGTTCATG ATATGGCAGA ATGCATCGTT GGGGACATAG CACCAGCAGA TAACATCCCC AAGGAAGAAA AACATAGGCG AGAAGAGGAA GCTATGAAGC AGATAACCCA ACTACTACCA GAGGACCTCA GAAAGGAGCT CTATGAACTT TGGGAAGAGT ACGAGACCCA ATCTAGTGCA GAAGCCAAAT TTGTGAAGCA GCTAGACCAA TGTGAGATGA TTCTTCAAGC ATCTGAATAT GAAGACCTTG AACACAAACC TGGAAGTCTG CAAGACTTCT ATGATTCCAC AGCAGGAAAA TTCAATCACC CTGAGATAGT CCAGCTTGTT TCTGAACTTG AGGCAGAAAG AAACGCTAAC ATAGCTGCAG CTGCCAGTGA GCCACACTCC TGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
 |
A new rhesus macaque assembly and annotation for next-generation sequencing analyses.
Biology direct9(1)20(2014 Oct)
Zimin AV,Cornish AS,Maudhoo MD,Gibbs RM,Zhang X,Pandey S,Meehan DT,Wipfler K,Bosinger SE,Johnson ZP,Tharp GK,Mar?ais G,Roberts M,Ferguson B,Fox HS,Treangen T,Salzberg SL,Yorke JA,Norgren RB Jr |
 |
Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques.
Nature biotechnology29(11)1019-23(2011 Oct)
Yan G,Zhang G,Fang X,Zhang Y,Li C,Ling F,Cooper DN,Li Q,Li Y,van Gool AJ,Du H,Chen J,Chen R,Zhang P,Huang Z,Thompson JR,Meng Y,Bai Y,Wang J,Zhuo M,Wang T,Huang Y,Wei L,Li J,Wang Z,Hu H,Yang P,Le L,Stenson PD,Li B,Liu X,Ball EV,An N,Huang Q,Zhang Y,Fan W,Zhang X,Li Y,Wang W,Katze MG,Su B,Nielsen R,Yang H,Wang J,Wang X,Wang J |