ORF » Species Summary » Xenopus tropicalis » LOC100485437 cDNA ORF clone

LOC100485437 cDNA ORF clone, Xenopus tropicalis(tropical clawed frog)

The following LOC100485437 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC100485437 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
OXa04539 XM_012955560.2
Latest version!		 Xenopus tropicalis melanopsin-B-like (LOC100485437), mRNA. pcDNA3.1-C-(k)DYK or customized vector 7-9 $342.30
$489.00
OXa48229 XM_031903160.1
Latest version!		 Xenopus tropicalis melanopsin-B-like (LOC100485437), transcript variant X2, mRNA. pcDNA3.1-C-(k)DYK or customized vector 14-16 $307.30
$439.00
OXa48229 XM_031903158.1
Latest version!		 Xenopus tropicalis melanopsin-B-like (LOC100485437), transcript variant X1, mRNA. pcDNA3.1-C-(k)DYK or customized vector 14-16 $307.30
$439.00
OXa48230 XM_012955560.3
Latest version!		 Xenopus tropicalis melanopsin-B-like (LOC100485437), transcript variant X3, mRNA. pcDNA3.1-C-(k)DYK or customized vector 14-16 $307.30
$439.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

  • Reference Sequences (Refseq)
    LOC100485437 ( XM_012955560.2 ) cDNA ORF clone, Xenopus tropicalis(tropical clawed frog) -> XP_012811014.1 Xenopus tropicalis melanopsin-B-like (LOC100485437), mRNA.
    Price & Availability↑
    CloneID OXa04539
    Clone ID Related Accession (Same CDS sequence) XM_012955560.2
    Accession Version XM_012955560.2 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1656bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 2016-09-07
    Organism Xenopus tropicalis(tropical clawed frog)
    Product melanopsin-B-like
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030677.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 8, 2016 this sequence version replaced XM_012955560.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Xenopus tropicalis Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    ATGGACCTTG AAAAAACGGT TGAATATGGA ACACGTCGTC AGGATGCAGC GGGACAACTA 
    GATGCCCCAG CTCAGGTTCT TTACACAATT GGAAGCTTCA TATTGATAAT TGGCTTTGTG 
    GGGATAATAG GAAACTTGTT GGTCCTCTAT GCATTTTACA GCAACAAGAA GCTGAGGACA 
    GCACCCAACT ATTTTATAAT GAACTTAGCA ATCAGTGATT TTTTGATGTC AGCGACACAG 
    GCACCAGTTT GCTTTCTTAG CAGCTTGCAC AGGGAGTGGA TACTTGGAGA AATAGGCTGT 
    AACGTGTATG CGTTTTGTGG GGCATTGTTT GGAATAACCT CTATGATGAC TCTACTGGCT 
    ATATCAGTCA ATCGATATAT AGTTATCACA AAACCCCTAC AGTCCATTCA ATGGTCTTCC 
    AAAAAAAGAA CATTACAGGT TATTGTCCTG GTCTGGATGT ATTCTTTTAT GTGGAGCTTG 
    GCACCATTAC TTGGCTGGAG TTCCTATGTG CCAGAGGGCT TAAGGATATC TTGTACGTGG 
    GACTATGTGA CATCTACAAC ATCAAACAAA AGTTACACAA TGATGTTGTG CTGTTGCGTC 
    TTCTTCATTC CACTTATCAT AATATCACAT TGTTACTTTT TCATGTTTCT GGCAATTAGA 
    AGTACTGGCA GGAATGTACA AAAACTTGGA TCATACGGTC GCCAATCTTT TTTGACACCG 
    ACCATGAAGA ATGAATGGAA AATGGCAAAA ATTGCTTTTG TAATCATCAT TGTTTATGTA 
    CTGTCTTGGT CTCCTTATGC TTGTGTCACA CTGATTGCTT GGGCTGGGCA TGGTAAATCT 
    TTAACTCCCT ATTCCAAGAC AGTCCCAGCA GTCATTGCCA AAGCATCTGC TATCTACAAT 
    CCAATCATCT ATGGAATAAT CCACCCAAAA TACAGGGAAA CCATCCATAA GACTGTGCCC 
    TGTCTCCGTT TTCTAATTAA GGAGCCAAAA AAAGATTGCT TTGAGTCTTC AGTAAGAGGT 
    TCTATTTACA GCCGACAATC ATTAGTCGCA AGGAAGAAAA ATAGCTGCAT TTCAACCGTT 
    TCCACGGCAG AAACAGTACT GACTGACGTG GAGCAGGATT CAATTTACAA AAGTGCGACT 
    TATCAAAGAA GCAACTCATT TTCAAGCAGT CAAAGAAAAG CACAAAAAGG AGAGCTCTTG 
    ACGAAGGCTT GGAGCTGCAA TGCTTTACCC AAAGAAAAGG ATCCAAATTC ATCTCACAAA 
    TTGGAACAGC CATTAACATG GCCAGATGAT CCAAGCTCAA AGGAGATTCT TCTCTCCAGT 
    TCAATGAATA CAGTTACCTA TCCCATTGGC TTGGGATCCA TAGTTAAAGA TGGGATTTCA 
    AATATTCCCA ATGTTAGAAA TCACAGAATT GATAAAAGCA GAGGTCTGGA CTGGATTATT 
    AATGCTACCA TTCCTCGAAT TGTCATAATT CCTACCTCAG AGAGCAAAAT CTCCGAAGGC 
    CAAGAAGAAC ATGATAATAA TACTGTGGAA AAAAGTAAAA GAACAGAGGA AGAAGATGAT 
    TTCTTTAACT TTAATGTTGA TACAAGCCTG TTAAATCTGG AAGGATTAAC TTCATCTACA 
    GACCTATATG AAGTAGTTGA AAGGTTCCTT TCCTAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_012811014.1
    CDS376..2031
    Translation

    Target ORF information:

    RefSeq Version XM_012955560.2
    Organism Xenopus tropicalis(tropical clawed frog)
    Definition Xenopus tropicalis melanopsin-B-like (LOC100485437), mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_012955560.2

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    ATGGACCTTG AAAAAACGGT TGAATATGGA ACACGTCGTC AGGATGCAGC GGGACAACTA 
    GATGCCCCAG CTCAGGTTCT TTACACAATT GGAAGCTTCA TATTGATAAT TGGCTTTGTG 
    GGGATAATAG GAAACTTGTT GGTCCTCTAT GCATTTTACA GCAACAAGAA GCTGAGGACA 
    GCACCCAACT ATTTTATAAT GAACTTAGCA ATCAGTGATT TTTTGATGTC AGCGACACAG 
    GCACCAGTTT GCTTTCTTAG CAGCTTGCAC AGGGAGTGGA TACTTGGAGA AATAGGCTGT 
    AACGTGTATG CGTTTTGTGG GGCATTGTTT GGAATAACCT CTATGATGAC TCTACTGGCT 
    ATATCAGTCA ATCGATATAT AGTTATCACA AAACCCCTAC AGTCCATTCA ATGGTCTTCC 
    AAAAAAAGAA CATTACAGGT TATTGTCCTG GTCTGGATGT ATTCTTTTAT GTGGAGCTTG 
    GCACCATTAC TTGGCTGGAG TTCCTATGTG CCAGAGGGCT TAAGGATATC TTGTACGTGG 
    GACTATGTGA CATCTACAAC ATCAAACAAA AGTTACACAA TGATGTTGTG CTGTTGCGTC 
    TTCTTCATTC CACTTATCAT AATATCACAT TGTTACTTTT TCATGTTTCT GGCAATTAGA 
    AGTACTGGCA GGAATGTACA AAAACTTGGA TCATACGGTC GCCAATCTTT TTTGACACCG 
    ACCATGAAGA ATGAATGGAA AATGGCAAAA ATTGCTTTTG TAATCATCAT TGTTTATGTA 
    CTGTCTTGGT CTCCTTATGC TTGTGTCACA CTGATTGCTT GGGCTGGGCA TGGTAAATCT 
    TTAACTCCCT ATTCCAAGAC AGTCCCAGCA GTCATTGCCA AAGCATCTGC TATCTACAAT 
    CCAATCATCT ATGGAATAAT CCACCCAAAA TACAGGGAAA CCATCCATAA GACTGTGCCC 
    TGTCTCCGTT TTCTAATTAA GGAGCCAAAA AAAGATTGCT TTGAGTCTTC AGTAAGAGGT 
    TCTATTTACA GCCGACAATC ATTAGTCGCA AGGAAGAAAA ATAGCTGCAT TTCAACCGTT 
    TCCACGGCAG AAACAGTACT GACTGACGTG GAGCAGGATT CAATTTACAA AAGTGCGACT 
    TATCAAAGAA GCAACTCATT TTCAAGCAGT CAAAGAAAAG CACAAAAAGG AGAGCTCTTG 
    ACGAAGGCTT GGAGCTGCAA TGCTTTACCC AAAGAAAAGG ATCCAAATTC ATCTCACAAA 
    TTGGAACAGC CATTAACATG GCCAGATGAT CCAAGCTCAA AGGAGATTCT TCTCTCCAGT 
    TCAATGAATA CAGTTACCTA TCCCATTGGC TTGGGATCCA TAGTTAAAGA TGGGATTTCA 
    AATATTCCCA ATGTTAGAAA TCACAGAATT GATAAAAGCA GAGGTCTGGA CTGGATTATT 
    AATGCTACCA TTCCTCGAAT TGTCATAATT CCTACCTCAG AGAGCAAAAT CTCCGAAGGC 
    CAAGAAGAAC ATGATAATAA TACTGTGGAA AAAAGTAAAA GAACAGAGGA AGAAGATGAT 
    TTCTTTAACT TTAATGTTGA TACAAGCCTG TTAAATCTGG AAGGATTAAC TTCATCTACA 
    GACCTATATG AAGTAGTTGA AAGGTTCCTT TCCTAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    LOC100485437 ( XM_031903158.1 ) cDNA ORF clone, Xenopus tropicalis(tropical clawed frog) -> XP_031759018.1 Xenopus tropicalis melanopsin-B-like (LOC100485437), transcript variant X1, mRNA.
    Price & Availability↑
    CloneID OXa48229
    Clone ID Related Accession (Same CDS sequence) XM_031903158.1 , XM_031903160.1
    Accession Version XM_031903158.1 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1749bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 2019-12-17
    Organism Xenopus tropicalis(tropical clawed frog)
    Product melanopsin-B isoform X1
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030677.2) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Xenopus tropicalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    ATGGACCTTG AAAAAACGGT TGAATATGGA ACACGTCGTC AGGATGCAGC GGGACAACTA 
    GATGCCCCAG CTCAGGTTCT TTACACAATT GGAAGCTTCA TATTGATAAT TGGCTTTGTG 
    GGGATAATAG GAAACTTGTT GGTCCTCTAT GCATTTTACA GCAACAAGAA GCTGAGGACA 
    GCACCCAACT ATTTTATAAT GAACTTAGCA ATCAGTGATT TTTTGATGTC AGCGACACAG 
    GCACCAGTTT GCTTTCTTAG CAGCTTGCAC AGGGAGTGGA TACTTGGAGA AATAGGCTGT 
    AACGTGTATG CGTTTTGTGG GGCATTGTTT GGAATAACCT CTATGATGAC TCTACTGGCT 
    ATATCAGTCA ATCGATATAT AGTTATCACA AAACCCCTAC AGTCCATTCA ATGGTCTTCC 
    AAAAAAAGAA CATCACAGGT TATTGTCCTG GTCTGGATGT ATTCTTTTAT GTGGAGCTTG 
    GCACCATTAC TTGGCTGGAG TTCCTATGTG CCAGAGGGCT TAAGGATATC TTGTACGTGG 
    GACTATGTGA CATCTACAAC ATCAAACAAA AGTTACACAA TGATGTTGTG CTGTTGCGTC 
    TTCTTCATTC CACTTATCAT AATATCACAT TGTTACTTTT TCATGTTTCT GGCAATTAGA 
    AGTACTGGCA GGAATGTACA AAAACTTGGA TCATACGGTC GCCAATCTTT TTTGACACCG 
    ACCATGAAGA ATGAATGGAA AATGGCAAAA ATTGCTTTTG TAATCATCAT TGTTTATGTA 
    CTGTCTTGGT CTCCTTATGC TTGTGTCACA CTGATTGCTT GGGCTGGGCA TGGTAAATCT 
    TTAACTCCCT ATTCCAAGAC AGTCCCAGCA GTCATTGCCA AAGCATCTGC TATCTACAAT 
    CCAATCATCT ATGGAATAAT CCACCCAAAA TACAGGGAAA CCATCCATAA GACTGTGCCC 
    TGTCTCCGTT TTCTAATTAA GGAGCCAAAA AAAGATTGCT TTGAGTCTTC AGTAAGAGGT 
    TCTATTTACA GCCGACAATC ATTAGTCGCA AGGAAGAAAA ATAGCTGCAT TTCAACCGTT 
    TCCACGGCAG AAACAGTGAG TTCAAATGTT TGGGACGACA CATCTAATGG GCATTGTAGG 
    AAATCACTTT CTCAGACTCT GAGCAATTTG TGTTCTCCCT TATTTCAGGT ACTGACTGAC 
    GTGGAGCAGG ATTCAATTTA CAAAAGTGCG ACTTATCAAA GAAGCAACTC ATTTTCAAGC 
    AGTCAAAGAA AAGCACAAAA AGGAGAGCTC TTGACGAAGG CTTGGAGCTG CAATGCTTTA 
    CCCAAAGAAA AGGATCCAAA TTCATCTCAC AAATTGGAAC AGCCATTAAC ATGGCCAGAT 
    GATCCAAGCT CAAAGGAGAT TCTTCTCTCC AGTTCAATGA ATACAGTTAC CTATCCCATT 
    GGCTTGGGAT CCATAGTTAA AGATGGGATT TCAAATATTC CCAATGTTAG AAATCACAGA 
    ATTGATAAAA GCGGAGGTCT GGACTGGATT ATTAATGCTA CCATTCCTCG AATTGTCATA 
    ATTCCTACCT CAGAGAGCAA AATCTCCGAA GGCCAAGAAG AACATGATAA TAATACTGTG 
    GAAAAAAGTA AAAGAACAGA GGAAGAAGAT GATTTCTTTA ACTTTAATGT TGATACAAGC 
    CTGTTAAATC TGGAAGGATT AACTTCATCT ACAGACCTAT ATGAAGTAGT TGAAAGGTTC 
    CTTTCCTAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_031759018.1
    CDS390..2138
    Translation

    Target ORF information:

    RefSeq Version XM_031903158.1
    Organism Xenopus tropicalis(tropical clawed frog)
    Definition Xenopus tropicalis melanopsin-B-like (LOC100485437), transcript variant X1, mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_031903158.1

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    ATGGACCTTG AAAAAACGGT TGAATATGGA ACACGTCGTC AGGATGCAGC GGGACAACTA 
    GATGCCCCAG CTCAGGTTCT TTACACAATT GGAAGCTTCA TATTGATAAT TGGCTTTGTG 
    GGGATAATAG GAAACTTGTT GGTCCTCTAT GCATTTTACA GCAACAAGAA GCTGAGGACA 
    GCACCCAACT ATTTTATAAT GAACTTAGCA ATCAGTGATT TTTTGATGTC AGCGACACAG 
    GCACCAGTTT GCTTTCTTAG CAGCTTGCAC AGGGAGTGGA TACTTGGAGA AATAGGCTGT 
    AACGTGTATG CGTTTTGTGG GGCATTGTTT GGAATAACCT CTATGATGAC TCTACTGGCT 
    ATATCAGTCA ATCGATATAT AGTTATCACA AAACCCCTAC AGTCCATTCA ATGGTCTTCC 
    AAAAAAAGAA CATCACAGGT TATTGTCCTG GTCTGGATGT ATTCTTTTAT GTGGAGCTTG 
    GCACCATTAC TTGGCTGGAG TTCCTATGTG CCAGAGGGCT TAAGGATATC TTGTACGTGG 
    GACTATGTGA CATCTACAAC ATCAAACAAA AGTTACACAA TGATGTTGTG CTGTTGCGTC 
    TTCTTCATTC CACTTATCAT AATATCACAT TGTTACTTTT TCATGTTTCT GGCAATTAGA 
    AGTACTGGCA GGAATGTACA AAAACTTGGA TCATACGGTC GCCAATCTTT TTTGACACCG 
    ACCATGAAGA ATGAATGGAA AATGGCAAAA ATTGCTTTTG TAATCATCAT TGTTTATGTA 
    CTGTCTTGGT CTCCTTATGC TTGTGTCACA CTGATTGCTT GGGCTGGGCA TGGTAAATCT 
    TTAACTCCCT ATTCCAAGAC AGTCCCAGCA GTCATTGCCA AAGCATCTGC TATCTACAAT 
    CCAATCATCT ATGGAATAAT CCACCCAAAA TACAGGGAAA CCATCCATAA GACTGTGCCC 
    TGTCTCCGTT TTCTAATTAA GGAGCCAAAA AAAGATTGCT TTGAGTCTTC AGTAAGAGGT 
    TCTATTTACA GCCGACAATC ATTAGTCGCA AGGAAGAAAA ATAGCTGCAT TTCAACCGTT 
    TCCACGGCAG AAACAGTGAG TTCAAATGTT TGGGACGACA CATCTAATGG GCATTGTAGG 
    AAATCACTTT CTCAGACTCT GAGCAATTTG TGTTCTCCCT TATTTCAGGT ACTGACTGAC 
    GTGGAGCAGG ATTCAATTTA CAAAAGTGCG ACTTATCAAA GAAGCAACTC ATTTTCAAGC 
    AGTCAAAGAA AAGCACAAAA AGGAGAGCTC TTGACGAAGG CTTGGAGCTG CAATGCTTTA 
    CCCAAAGAAA AGGATCCAAA TTCATCTCAC AAATTGGAAC AGCCATTAAC ATGGCCAGAT 
    GATCCAAGCT CAAAGGAGAT TCTTCTCTCC AGTTCAATGA ATACAGTTAC CTATCCCATT 
    GGCTTGGGAT CCATAGTTAA AGATGGGATT TCAAATATTC CCAATGTTAG AAATCACAGA 
    ATTGATAAAA GCGGAGGTCT GGACTGGATT ATTAATGCTA CCATTCCTCG AATTGTCATA 
    ATTCCTACCT CAGAGAGCAA AATCTCCGAA GGCCAAGAAG AACATGATAA TAATACTGTG 
    GAAAAAAGTA AAAGAACAGA GGAAGAAGAT GATTTCTTTA ACTTTAATGT TGATACAAGC 
    CTGTTAAATC TGGAAGGATT AACTTCATCT ACAGACCTAT ATGAAGTAGT TGAAAGGTTC 
    CTTTCCTAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    LOC100485437 ( XM_031903160.1 ) cDNA ORF clone, Xenopus tropicalis(tropical clawed frog) -> XP_031759020.1 Xenopus tropicalis melanopsin-B-like (LOC100485437), transcript variant X2, mRNA.
    Price & Availability↑
    CloneID OXa48229
    Clone ID Related Accession (Same CDS sequence) XM_031903158.1 , XM_031903160.1
    Accession Version XM_031903160.1 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1749bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 2019-12-17
    Organism Xenopus tropicalis(tropical clawed frog)
    Product melanopsin-B isoform X1
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030677.2) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Xenopus tropicalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    ATGGACCTTG AAAAAACGGT TGAATATGGA ACACGTCGTC AGGATGCAGC GGGACAACTA 
    GATGCCCCAG CTCAGGTTCT TTACACAATT GGAAGCTTCA TATTGATAAT TGGCTTTGTG 
    GGGATAATAG GAAACTTGTT GGTCCTCTAT GCATTTTACA GCAACAAGAA GCTGAGGACA 
    GCACCCAACT ATTTTATAAT GAACTTAGCA ATCAGTGATT TTTTGATGTC AGCGACACAG 
    GCACCAGTTT GCTTTCTTAG CAGCTTGCAC AGGGAGTGGA TACTTGGAGA AATAGGCTGT 
    AACGTGTATG CGTTTTGTGG GGCATTGTTT GGAATAACCT CTATGATGAC TCTACTGGCT 
    ATATCAGTCA ATCGATATAT AGTTATCACA AAACCCCTAC AGTCCATTCA ATGGTCTTCC 
    AAAAAAAGAA CATCACAGGT TATTGTCCTG GTCTGGATGT ATTCTTTTAT GTGGAGCTTG 
    GCACCATTAC TTGGCTGGAG TTCCTATGTG CCAGAGGGCT TAAGGATATC TTGTACGTGG 
    GACTATGTGA CATCTACAAC ATCAAACAAA AGTTACACAA TGATGTTGTG CTGTTGCGTC 
    TTCTTCATTC CACTTATCAT AATATCACAT TGTTACTTTT TCATGTTTCT GGCAATTAGA 
    AGTACTGGCA GGAATGTACA AAAACTTGGA TCATACGGTC GCCAATCTTT TTTGACACCG 
    ACCATGAAGA ATGAATGGAA AATGGCAAAA ATTGCTTTTG TAATCATCAT TGTTTATGTA 
    CTGTCTTGGT CTCCTTATGC TTGTGTCACA CTGATTGCTT GGGCTGGGCA TGGTAAATCT 
    TTAACTCCCT ATTCCAAGAC AGTCCCAGCA GTCATTGCCA AAGCATCTGC TATCTACAAT 
    CCAATCATCT ATGGAATAAT CCACCCAAAA TACAGGGAAA CCATCCATAA GACTGTGCCC 
    TGTCTCCGTT TTCTAATTAA GGAGCCAAAA AAAGATTGCT TTGAGTCTTC AGTAAGAGGT 
    TCTATTTACA GCCGACAATC ATTAGTCGCA AGGAAGAAAA ATAGCTGCAT TTCAACCGTT 
    TCCACGGCAG AAACAGTGAG TTCAAATGTT TGGGACGACA CATCTAATGG GCATTGTAGG 
    AAATCACTTT CTCAGACTCT GAGCAATTTG TGTTCTCCCT TATTTCAGGT ACTGACTGAC 
    GTGGAGCAGG ATTCAATTTA CAAAAGTGCG ACTTATCAAA GAAGCAACTC ATTTTCAAGC 
    AGTCAAAGAA AAGCACAAAA AGGAGAGCTC TTGACGAAGG CTTGGAGCTG CAATGCTTTA 
    CCCAAAGAAA AGGATCCAAA TTCATCTCAC AAATTGGAAC AGCCATTAAC ATGGCCAGAT 
    GATCCAAGCT CAAAGGAGAT TCTTCTCTCC AGTTCAATGA ATACAGTTAC CTATCCCATT 
    GGCTTGGGAT CCATAGTTAA AGATGGGATT TCAAATATTC CCAATGTTAG AAATCACAGA 
    ATTGATAAAA GCGGAGGTCT GGACTGGATT ATTAATGCTA CCATTCCTCG AATTGTCATA 
    ATTCCTACCT CAGAGAGCAA AATCTCCGAA GGCCAAGAAG AACATGATAA TAATACTGTG 
    GAAAAAAGTA AAAGAACAGA GGAAGAAGAT GATTTCTTTA ACTTTAATGT TGATACAAGC 
    CTGTTAAATC TGGAAGGATT AACTTCATCT ACAGACCTAT ATGAAGTAGT TGAAAGGTTC 
    CTTTCCTAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_031759020.1
    CDS511..2259
    Translation

    Target ORF information:

    RefSeq Version XM_031903160.1
    Organism Xenopus tropicalis(tropical clawed frog)
    Definition Xenopus tropicalis melanopsin-B-like (LOC100485437), transcript variant X2, mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_031903160.1

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    ATGGACCTTG AAAAAACGGT TGAATATGGA ACACGTCGTC AGGATGCAGC GGGACAACTA 
    GATGCCCCAG CTCAGGTTCT TTACACAATT GGAAGCTTCA TATTGATAAT TGGCTTTGTG 
    GGGATAATAG GAAACTTGTT GGTCCTCTAT GCATTTTACA GCAACAAGAA GCTGAGGACA 
    GCACCCAACT ATTTTATAAT GAACTTAGCA ATCAGTGATT TTTTGATGTC AGCGACACAG 
    GCACCAGTTT GCTTTCTTAG CAGCTTGCAC AGGGAGTGGA TACTTGGAGA AATAGGCTGT 
    AACGTGTATG CGTTTTGTGG GGCATTGTTT GGAATAACCT CTATGATGAC TCTACTGGCT 
    ATATCAGTCA ATCGATATAT AGTTATCACA AAACCCCTAC AGTCCATTCA ATGGTCTTCC 
    AAAAAAAGAA CATCACAGGT TATTGTCCTG GTCTGGATGT ATTCTTTTAT GTGGAGCTTG 
    GCACCATTAC TTGGCTGGAG TTCCTATGTG CCAGAGGGCT TAAGGATATC TTGTACGTGG 
    GACTATGTGA CATCTACAAC ATCAAACAAA AGTTACACAA TGATGTTGTG CTGTTGCGTC 
    TTCTTCATTC CACTTATCAT AATATCACAT TGTTACTTTT TCATGTTTCT GGCAATTAGA 
    AGTACTGGCA GGAATGTACA AAAACTTGGA TCATACGGTC GCCAATCTTT TTTGACACCG 
    ACCATGAAGA ATGAATGGAA AATGGCAAAA ATTGCTTTTG TAATCATCAT TGTTTATGTA 
    CTGTCTTGGT CTCCTTATGC TTGTGTCACA CTGATTGCTT GGGCTGGGCA TGGTAAATCT 
    TTAACTCCCT ATTCCAAGAC AGTCCCAGCA GTCATTGCCA AAGCATCTGC TATCTACAAT 
    CCAATCATCT ATGGAATAAT CCACCCAAAA TACAGGGAAA CCATCCATAA GACTGTGCCC 
    TGTCTCCGTT TTCTAATTAA GGAGCCAAAA AAAGATTGCT TTGAGTCTTC AGTAAGAGGT 
    TCTATTTACA GCCGACAATC ATTAGTCGCA AGGAAGAAAA ATAGCTGCAT TTCAACCGTT 
    TCCACGGCAG AAACAGTGAG TTCAAATGTT TGGGACGACA CATCTAATGG GCATTGTAGG 
    AAATCACTTT CTCAGACTCT GAGCAATTTG TGTTCTCCCT TATTTCAGGT ACTGACTGAC 
    GTGGAGCAGG ATTCAATTTA CAAAAGTGCG ACTTATCAAA GAAGCAACTC ATTTTCAAGC 
    AGTCAAAGAA AAGCACAAAA AGGAGAGCTC TTGACGAAGG CTTGGAGCTG CAATGCTTTA 
    CCCAAAGAAA AGGATCCAAA TTCATCTCAC AAATTGGAAC AGCCATTAAC ATGGCCAGAT 
    GATCCAAGCT CAAAGGAGAT TCTTCTCTCC AGTTCAATGA ATACAGTTAC CTATCCCATT 
    GGCTTGGGAT CCATAGTTAA AGATGGGATT TCAAATATTC CCAATGTTAG AAATCACAGA 
    ATTGATAAAA GCGGAGGTCT GGACTGGATT ATTAATGCTA CCATTCCTCG AATTGTCATA 
    ATTCCTACCT CAGAGAGCAA AATCTCCGAA GGCCAAGAAG AACATGATAA TAATACTGTG 
    GAAAAAAGTA AAAGAACAGA GGAAGAAGAT GATTTCTTTA ACTTTAATGT TGATACAAGC 
    CTGTTAAATC TGGAAGGATT AACTTCATCT ACAGACCTAT ATGAAGTAGT TGAAAGGTTC 
    CTTTCCTAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    LOC100485437 ( XM_012955560.3 ) cDNA ORF clone, Xenopus tropicalis(tropical clawed frog) -> XP_012811014.2 Xenopus tropicalis melanopsin-B-like (LOC100485437), transcript variant X3, mRNA.
    Price & Availability↑
    CloneID OXa48230
    Clone ID Related Accession (Same CDS sequence) XM_012955560.3
    Accession Version XM_012955560.3 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 1656bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 2019-12-17
    Organism Xenopus tropicalis(tropical clawed frog)
    Product melanopsin-B isoform X2
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_030677.2) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 18, 2019 this sequence version replaced XM_012955560.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Xenopus tropicalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    ATGGACCTTG AAAAAACGGT TGAATATGGA ACACGTCGTC AGGATGCAGC GGGACAACTA 
    GATGCCCCAG CTCAGGTTCT TTACACAATT GGAAGCTTCA TATTGATAAT TGGCTTTGTG 
    GGGATAATAG GAAACTTGTT GGTCCTCTAT GCATTTTACA GCAACAAGAA GCTGAGGACA 
    GCACCCAACT ATTTTATAAT GAACTTAGCA ATCAGTGATT TTTTGATGTC AGCGACACAG 
    GCACCAGTTT GCTTTCTTAG CAGCTTGCAC AGGGAGTGGA TACTTGGAGA AATAGGCTGT 
    AACGTGTATG CGTTTTGTGG GGCATTGTTT GGAATAACCT CTATGATGAC TCTACTGGCT 
    ATATCAGTCA ATCGATATAT AGTTATCACA AAACCCCTAC AGTCCATTCA ATGGTCTTCC 
    AAAAAAAGAA CATCACAGGT TATTGTCCTG GTCTGGATGT ATTCTTTTAT GTGGAGCTTG 
    GCACCATTAC TTGGCTGGAG TTCCTATGTG CCAGAGGGCT TAAGGATATC TTGTACGTGG 
    GACTATGTGA CATCTACAAC ATCAAACAAA AGTTACACAA TGATGTTGTG CTGTTGCGTC 
    TTCTTCATTC CACTTATCAT AATATCACAT TGTTACTTTT TCATGTTTCT GGCAATTAGA 
    AGTACTGGCA GGAATGTACA AAAACTTGGA TCATACGGTC GCCAATCTTT TTTGACACCG 
    ACCATGAAGA ATGAATGGAA AATGGCAAAA ATTGCTTTTG TAATCATCAT TGTTTATGTA 
    CTGTCTTGGT CTCCTTATGC TTGTGTCACA CTGATTGCTT GGGCTGGGCA TGGTAAATCT 
    TTAACTCCCT ATTCCAAGAC AGTCCCAGCA GTCATTGCCA AAGCATCTGC TATCTACAAT 
    CCAATCATCT ATGGAATAAT CCACCCAAAA TACAGGGAAA CCATCCATAA GACTGTGCCC 
    TGTCTCCGTT TTCTAATTAA GGAGCCAAAA AAAGATTGCT TTGAGTCTTC AGTAAGAGGT 
    TCTATTTACA GCCGACAATC ATTAGTCGCA AGGAAGAAAA ATAGCTGCAT TTCAACCGTT 
    TCCACGGCAG AAACAGTACT GACTGACGTG GAGCAGGATT CAATTTACAA AAGTGCGACT 
    TATCAAAGAA GCAACTCATT TTCAAGCAGT CAAAGAAAAG CACAAAAAGG AGAGCTCTTG 
    ACGAAGGCTT GGAGCTGCAA TGCTTTACCC AAAGAAAAGG ATCCAAATTC ATCTCACAAA 
    TTGGAACAGC CATTAACATG GCCAGATGAT CCAAGCTCAA AGGAGATTCT TCTCTCCAGT 
    TCAATGAATA CAGTTACCTA TCCCATTGGC TTGGGATCCA TAGTTAAAGA TGGGATTTCA 
    AATATTCCCA ATGTTAGAAA TCACAGAATT GATAAAAGCG GAGGTCTGGA CTGGATTATT 
    AATGCTACCA TTCCTCGAAT TGTCATAATT CCTACCTCAG AGAGCAAAAT CTCCGAAGGC 
    CAAGAAGAAC ATGATAATAA TACTGTGGAA AAAAGTAAAA GAACAGAGGA AGAAGATGAT 
    TTCTTTAACT TTAATGTTGA TACAAGCCTG TTAAATCTGG AAGGATTAAC TTCATCTACA 
    GACCTATATG AAGTAGTTGA AAGGTTCCTT TCCTAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_012811014.2
    CDS390..2045
    Translation

    Target ORF information:

    RefSeq Version XM_012955560.3
    Organism Xenopus tropicalis(tropical clawed frog)
    Definition Xenopus tropicalis melanopsin-B-like (LOC100485437), transcript variant X3, mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    		 XM_012955560.3

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    ATGGACCTTG AAAAAACGGT TGAATATGGA ACACGTCGTC AGGATGCAGC GGGACAACTA 
    GATGCCCCAG CTCAGGTTCT TTACACAATT GGAAGCTTCA TATTGATAAT TGGCTTTGTG 
    GGGATAATAG GAAACTTGTT GGTCCTCTAT GCATTTTACA GCAACAAGAA GCTGAGGACA 
    GCACCCAACT ATTTTATAAT GAACTTAGCA ATCAGTGATT TTTTGATGTC AGCGACACAG 
    GCACCAGTTT GCTTTCTTAG CAGCTTGCAC AGGGAGTGGA TACTTGGAGA AATAGGCTGT 
    AACGTGTATG CGTTTTGTGG GGCATTGTTT GGAATAACCT CTATGATGAC TCTACTGGCT 
    ATATCAGTCA ATCGATATAT AGTTATCACA AAACCCCTAC AGTCCATTCA ATGGTCTTCC 
    AAAAAAAGAA CATCACAGGT TATTGTCCTG GTCTGGATGT ATTCTTTTAT GTGGAGCTTG 
    GCACCATTAC TTGGCTGGAG TTCCTATGTG CCAGAGGGCT TAAGGATATC TTGTACGTGG 
    GACTATGTGA CATCTACAAC ATCAAACAAA AGTTACACAA TGATGTTGTG CTGTTGCGTC 
    TTCTTCATTC CACTTATCAT AATATCACAT TGTTACTTTT TCATGTTTCT GGCAATTAGA 
    AGTACTGGCA GGAATGTACA AAAACTTGGA TCATACGGTC GCCAATCTTT TTTGACACCG 
    ACCATGAAGA ATGAATGGAA AATGGCAAAA ATTGCTTTTG TAATCATCAT TGTTTATGTA 
    CTGTCTTGGT CTCCTTATGC TTGTGTCACA CTGATTGCTT GGGCTGGGCA TGGTAAATCT 
    TTAACTCCCT ATTCCAAGAC AGTCCCAGCA GTCATTGCCA AAGCATCTGC TATCTACAAT 
    CCAATCATCT ATGGAATAAT CCACCCAAAA TACAGGGAAA CCATCCATAA GACTGTGCCC 
    TGTCTCCGTT TTCTAATTAA GGAGCCAAAA AAAGATTGCT TTGAGTCTTC AGTAAGAGGT 
    TCTATTTACA GCCGACAATC ATTAGTCGCA AGGAAGAAAA ATAGCTGCAT TTCAACCGTT 
    TCCACGGCAG AAACAGTACT GACTGACGTG GAGCAGGATT CAATTTACAA AAGTGCGACT 
    TATCAAAGAA GCAACTCATT TTCAAGCAGT CAAAGAAAAG CACAAAAAGG AGAGCTCTTG 
    ACGAAGGCTT GGAGCTGCAA TGCTTTACCC AAAGAAAAGG ATCCAAATTC ATCTCACAAA 
    TTGGAACAGC CATTAACATG GCCAGATGAT CCAAGCTCAA AGGAGATTCT TCTCTCCAGT 
    TCAATGAATA CAGTTACCTA TCCCATTGGC TTGGGATCCA TAGTTAAAGA TGGGATTTCA 
    AATATTCCCA ATGTTAGAAA TCACAGAATT GATAAAAGCG GAGGTCTGGA CTGGATTATT 
    AATGCTACCA TTCCTCGAAT TGTCATAATT CCTACCTCAG AGAGCAAAAT CTCCGAAGGC 
    CAAGAAGAAC ATGATAATAA TACTGTGGAA AAAAGTAAAA GAACAGAGGA AGAAGATGAT 
    TTCTTTAACT TTAATGTTGA TACAAGCCTG TTAAATCTGG AAGGATTAAC TTCATCTACA 
    GACCTATATG AAGTAGTTGA AAGGTTCCTT TCCTAA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

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