| Gene Symbol | LOC100277602 |
| Entrez Gene ID | 100277602 |
| Full Name | MATH domain containing protein |
| Synonyms | GRMZM2G042704 |
| Gene Type | protein-coding |
| Organism | Zea mays |
IVD Raw Materials
ORF » Species Summary » Zea mays » LOC100277602 cDNA ORF clone
| mRNA | Protein | Name |
|---|---|---|
| NM_001151115.1 | NP_001144587.1 | MATH domain containing protein |
| XM_008673223.2 | XP_008671445.1 | MATH domain containing protein isoform X3 |
| XM_008673209.2 | XP_008671431.1 | MATH domain containing protein isoform X1 |
| XM_008673214.2 | XP_008671436.1 | MATH domain containing protein isoform X1 |
| XM_008673214.3 | XP_008671436.1 | MATH domain containing protein isoform X1 |
| XM_008673218.2 | XP_008671440.1 | MATH domain containing protein isoform X2 |
| XM_008673223.3 | XP_008671445.1 | MATH domain containing protein isoform X3 |
The B73 maize genome: complexity, diversity, and dynamics.
Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, Strong C, Delehaunty K, Fronick C, Courtney B, Rock SM, Belter E, Du F, Kim K, Abbott RM, Cotton M, Levy A, Marchetto P, Ochoa K, Jackson SM, Gillam B, Chen W, Yan L, Higginbotham J, Cardenas M, Waligorski J, Applebaum E, Phelps L, Falcone J, Kanchi K, Thane T, Scimone A, Thane N, Henke J, Wang T, Ruppert J, Shah N, Rotter K, Hodges J, Ingenthron E, Cordes M, Kohlberg S, Sgro J, Delgado B, Mead K, Chinwalla A, Leonard S, Crouse K, Collura K, Kudrna D, Currie J, He R, Angelova A, Rajasekar S, Mueller T, Lomeli R, Scara G, Ko A, Delaney K, Wissotski M, Lopez G, Campos D, Braidotti M, Ashley E, Golser W, Kim H, Lee S, Lin J, Dujmic Z, Kim W, Talag J, Zuccolo A, Fan C, Sebastian A, Kramer M, Spiegel L, Nascimento L, Zutavern T, Miller B, Ambroise C, Muller S, Spooner W, Narechania A, Ren L, Wei S, Kumari S, Faga B, Levy MJ, McMahan L, Van Buren P, Vaughn MW, Ying K, Yeh CT, Emrich SJ, Jia Y, Kalyanaraman A, Hsia AP, Barbazuk WB, Baucom RS, Brutnell TP, Carpita NC, Chaparro C, Chia JM, Deragon JM, Estill JC, Fu Y, Jeddeloh JA, Han Y, Lee H, Li P, Lisch DR, Liu S, Liu Z, Nagel DH, McCann MC, SanMiguel P, Myers AM, Nettleton D, Nguyen J, Penning BW, Ponnala L, Schneider KL, Schwartz DC, Sharma A, Soderlund C, Springer NM, Sun Q, Wang H, Waterman M, Westerman R, Wolfgruber TK, Yang L, Yu Y, Zhang L, Zhou S, Zhu Q, Bennetzen JL, Dawe RK, Jiang J, Jiang N, Presting GG, Wessler SR, Aluru S, Martienssen RA, Clifton SW, McCombie WR, Wing RA, Wilson RK
Science (New York, N.Y.)326(5956)1112-5(2009 Nov)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC100277602 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC100277602 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
| CloneID | OZa13374 | |
| Clone ID Related Accession (Same CDS sequence) | NM_001151115.1 , XM_008673218.2 | |
| Accession Version | NM_001151115.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1029bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-04-01 | |
| Organism | Zea mays | |
| Product | MATH domain containing protein | |
| Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from EU968368.1. ##Evidence-Data-START## Transcript exon combination :: EU968368.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00780135, SAMN00780136 [ECO:0000348] ##Evidence-Data-END## | |
1 | ATGGGTGCAT GTGCCTCTTC ATCTCGTGGT CGACCCAACC ATGGCAAGAA CCAGAAATCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001144587.1 |
| CDS | 287..1315 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001151115.1 |
1 | ATGGGTGCAT GTGCCTCTTC ATCTCGTGGT CGACCCAACC ATGGCAAGAA CCAGAAATCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OZa13374 | |
| Clone ID Related Accession (Same CDS sequence) | NM_001151115.1 , XM_008673218.2 | |
| Accession Version | XM_008673218.2 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1029bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-12-17 | |
| Organism | Zea mays | |
| Product | MATH domain containing protein isoform X2 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024459.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 20, 2017 this sequence version replaced XM_008673218.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGGGTGCAT GTGCCTCTTC ATCTCGTGGT CGACCCAACC ATGGCAAGAA CCAGAAATCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_008671440.1 |
| CDS | 1305..2333 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_008673218.2 |
1 | ATGGGTGCAT GTGCCTCTTC ATCTCGTGGT CGACCCAACC ATGGCAAGAA CCAGAAATCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OZa27002 | |
| Clone ID Related Accession (Same CDS sequence) | XM_008673209.2 , XM_008673214.2 , XM_008673214.3 | |
| Accession Version | XM_008673209.2 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1038bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-12-17 | |
| Organism | Zea mays | |
| Product | MATH domain containing protein isoform X1 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024459.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 20, 2017 this sequence version replaced XM_008673209.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGGTCACTC GCTATACGGA TTGCACTTTC CTCCCAGGTC GACCCAACCA TGGCAAGAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_008671431.1 |
| CDS | 1135..2172 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_008673209.2 |
1 | ATGGTCACTC GCTATACGGA TTGCACTTTC CTCCCAGGTC GACCCAACCA TGGCAAGAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OZa27002 | |
| Clone ID Related Accession (Same CDS sequence) | XM_008673209.2 , XM_008673214.2 , XM_008673214.3 | |
| Accession Version | XM_008673214.2 | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1038bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-03-19 | |
| Organism | Zea mays | |
| Product | MATH domain containing protein isoform X1 | |
| Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024459.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 20, 2017 this sequence version replaced XM_008673214.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Zea mays Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGGTCACTC GCTATACGGA TTGCACTTTC CTCCCAGGTC GACCCAACCA TGGCAAGAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_008671436.1 |
| CDS | 500..1537 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_008673214.2 |
1 | ATGGTCACTC GCTATACGGA TTGCACTTTC CTCCCAGGTC GACCCAACCA TGGCAAGAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OZa27002 | |
| Clone ID Related Accession (Same CDS sequence) | XM_008673209.2 , XM_008673214.2 , XM_008673214.3 | |
| Accession Version | XM_008673214.3 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 1038bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-12-17 | |
| Organism | Zea mays | |
| Product | MATH domain containing protein isoform X1 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024459.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Dec 18, 2017 this sequence version replaced XM_008673214.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGGTCACTC GCTATACGGA TTGCACTTTC CTCCCAGGTC GACCCAACCA TGGCAAGAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_008671436.1 |
| CDS | 499..1536 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_008673214.3 |
1 | ATGGTCACTC GCTATACGGA TTGCACTTTC CTCCCAGGTC GACCCAACCA TGGCAAGAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OZa27003 | |
| Clone ID Related Accession (Same CDS sequence) | XM_008673223.2 , XM_008673223.3 | |
| Accession Version | XM_008673223.2 | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 903bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-03-19 | |
| Organism | Zea mays | |
| Product | MATH domain containing protein isoform X3 | |
| Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024459.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 20, 2017 this sequence version replaced XM_008673223.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Zea mays Annotation Release 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGGAAGAGA AGAGCAGCTT CATTTGGCAA ATCGATGGCT TCTCCTCGCT TCTTGACAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_008671445.1 |
| CDS | 341..1243 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_008673223.2 |
1 | ATGGAAGAGA AGAGCAGCTT CATTTGGCAA ATCGATGGCT TCTCCTCGCT TCTTGACAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OZa27003 | |
| Clone ID Related Accession (Same CDS sequence) | XM_008673223.2 , XM_008673223.3 | |
| Accession Version | XM_008673223.3 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 903bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2017-12-17 | |
| Organism | Zea mays | |
| Product | MATH domain containing protein isoform X3 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_024459.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Dec 18, 2017 this sequence version replaced XM_008673223.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Zea mays Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGGAAGAGA AGAGCAGCTT CATTTGGCAA ATCGATGGCT TCTCCTCGCT TCTTGACAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_008671445.1 |
| CDS | 354..1256 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_008673223.3 |
1 | ATGGAAGAGA AGAGCAGCTT CATTTGGCAA ATCGATGGCT TCTCCTCGCT TCTTGACAAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
The B73 maize genome: complexity, diversity, and dynamics. |