| Gene Symbol | LOC100182507 |
| Entrez Gene ID | 100182507 |
| Full Name | type III intermediate filament |
| Gene Type | protein-coding |
| Organism | Ciona intestinalis(vase tunicate) |
IVD Raw Materials
ORF » Species Summary » Ciona intestinalis » LOC100182507 cDNA ORF clone
| Gene Symbol | LOC100182507 |
| Entrez Gene ID | 100182507 |
| Full Name | type III intermediate filament |
| Gene Type | protein-coding |
| Organism | Ciona intestinalis(vase tunicate) |
| mRNA | Protein | Name |
|---|---|---|
| XM_002119101.4 | XP_002119137.3 | glial fibrillary acidic protein isoform X1 |
| XM_009861411.3 | XP_009859713.1 | type III intermediate filament isoform X4 |
| XM_026836149.1 | XP_026691950.1 | alpha-internexin isoform X2 |
| XM_009861411.2 | XP_009859713.1 | type III intermediate filament isoform X2 |
| XM_026836148.1 | XP_026691949.1 | glial fibrillary acidic protein isoform X1 |
| NM_001032782.2 | NP_001027954.2 | intermediate filament IF-Fb |
| XM_002119101.5 | XP_002119137.3 | glial fibrillary acidic protein isoform X3 |
An integrated database of the ascidian, Ciona intestinalis: towards functional genomics.
Satou Y, Kawashima T, Shoguchi E, Nakayama A, Satoh N
Zoological science22(8)837-43(2005 Aug)
The genome of the early chordate Ciona intestinalis encodes only five cytoplasmic intermediate filament proteins including a single type I and type II keratin and a unique IF-annexin fusion protein.
Karabinos A, Zimek A, Weber K
Gene326123-9(2004 Feb)
A cDNA resource from the basal chordate Ciona intestinalis.
Satou Y, Yamada L, Mochizuki Y, Takatori N, Kawashima T, Sasaki A, Hamaguchi M, Awazu S, Yagi K, Sasakura Y, Nakayama A, Ishikawa H, Inaba K, Satoh N
Genesis (New York, N.Y. : 2000)33(4)153-4(2002 Aug)
Cytoplasmic intermediate filament protein expression in tunicate development: a specific marker for the test cells.
Wang J, Karabinos A, Zimek A, Meyer M, Riemer D, Hudson C, Lemaire P, Weber K
European journal of cell biology81(5)302-11(2002 May)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following LOC100182507 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the LOC100182507 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
| CloneID | OCi16139 | |
| Clone ID Related Accession (Same CDS sequence) | XM_009861411.3 , XM_009861411.2 , NM_001032782.2 | |
| Accession Version | NM_001032782.2 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 2202bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2019-03-25 | |
| Organism | Ciona intestinalis(vase tunicate) | |
| Product | intermediate filament IF-Fb | |
| Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EAAA01002948.1 and EAAA01002949.1. On Mar 26, 2019 this sequence version replaced NM_001032782.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: AJ575294.1, GBKV01018054.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00028095, SAMD00028097 [ECO:0000348] ##Evidence-Data-END## | |
1 | ATGGCGCCCC CAAGACCTTC AGCTTACCGT AAAAGCCTCG GACGAGATAA GGGAAAAGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | NP_001027954.2 |
| CDS | 30..2231 |
| Translation |
Target ORF information:
Target ORF information:
|
NM_001032782.2 |
1 | ATGGCGCCCC CAAGACCTTC AGCTTACCGT AAAAGCCTCG GACGAGATAA GGGAAAAGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OCi16138 | |
| Clone ID Related Accession (Same CDS sequence) | XM_002119101.4 , XM_002119101.5 | |
| Accession Version | XM_002119101.4 | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 2253bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2016-10-20 | |
| Organism | Ciona intestinalis(vase tunicate) | |
| Product | glial fibrillary acidic protein isoform X1 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020174.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Oct 21, 2016 this sequence version replaced XM_002119101.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Ciona intestinalis Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGTTTTTTC GAAGAAGTAG ATCGCGTCTT GTAATGAGCA GAGACGAAAA CATGGCGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_002119137.3 |
| CDS | 3..2255 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_002119101.4 |
1 | ATGTTTTTTC GAAGAAGTAG ATCGCGTCTT GTAATGAGCA GAGACGAAAA CATGGCGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OCi16138 | |
| Clone ID Related Accession (Same CDS sequence) | XM_002119101.4 , XM_002119101.5 | |
| Accession Version | XM_002119101.5 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 2253bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2018-10-21 | |
| Organism | Ciona intestinalis(vase tunicate) | |
| Product | glial fibrillary acidic protein isoform X3 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020174.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Oct 22, 2018 this sequence version replaced XM_002119101.4. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ciona intestinalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGTTTTTTC GAAGAAGTAG ATCGCGTCTT GTAATGAGCA GAGACGAAAA CATGGCGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_002119137.3 |
| CDS | 3..2255 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_002119101.5 |
1 | ATGTTTTTTC GAAGAAGTAG ATCGCGTCTT GTAATGAGCA GAGACGAAAA CATGGCGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OCi16139 | |
| Clone ID Related Accession (Same CDS sequence) | XM_009861411.3 , XM_009861411.2 , NM_001032782.2 | |
| Accession Version | XM_009861411.3 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 2202bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2018-10-21 | |
| Organism | Ciona intestinalis(vase tunicate) | |
| Product | type III intermediate filament isoform X4 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020174.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Oct 22, 2018 this sequence version replaced XM_009861411.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ciona intestinalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGGCGCCCC CAAGACCTTC AGCTTACCGT AAAAGCCTCG GACGAGATAA GGGAAAAGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_009859713.1 |
| CDS | 160..2361 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_009861411.3 |
1 | ATGGCGCCCC CAAGACCTTC AGCTTACCGT AAAAGCCTCG GACGAGATAA GGGAAAAGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OCi16139 | |
| Clone ID Related Accession (Same CDS sequence) | XM_009861411.3 , XM_009861411.2 , NM_001032782.2 | |
| Accession Version | XM_009861411.2 | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 2202bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2016-10-20 | |
| Organism | Ciona intestinalis(vase tunicate) | |
| Product | type III intermediate filament isoform X2 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020174.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Oct 21, 2016 this sequence version replaced XM_009861411.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Ciona intestinalis Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGGCGCCCC CAAGACCTTC AGCTTACCGT AAAAGCCTCG GACGAGATAA GGGAAAAGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_009859713.1 |
| CDS | 160..2361 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_009861411.2 |
1 | ATGGCGCCCC CAAGACCTTC AGCTTACCGT AAAAGCCTCG GACGAGATAA GGGAAAAGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OCi156962 | |
| Clone ID Related Accession (Same CDS sequence) | XM_026836148.1 | |
| Accession Version | XM_026836148.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 2388bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2018-10-21 | |
| Organism | Ciona intestinalis(vase tunicate) | |
| Product | glial fibrillary acidic protein isoform X1 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020174.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ciona intestinalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGTTTTTTC GAAGAAGTAG ATCGCGTCTT GTAATGAGCA GAGACGAAAA CATGGCGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_026691949.1 |
| CDS | 3..2390 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_026836148.1 |
1 | ATGTTTTTTC GAAGAAGTAG ATCGCGTCTT GTAATGAGCA GAGACGAAAA CATGGCGCCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| CloneID | OCi156963 | |
| Clone ID Related Accession (Same CDS sequence) | XM_026836149.1 | |
| Accession Version | XM_026836149.1 Latest version! | Documents for ORF clone product in default vector |
| Sequence Information | ORF Nucleotide Sequence (Length: 2337bp) Protein sequence SNP |
|
| Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
| Clone information | Clone Map | MSDS |
| Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
| ORF Insert Method | CloneEZ™ Seamless cloning technology | |
| Insert Structure | linear | |
| Update Date | 2018-10-21 | |
| Organism | Ciona intestinalis(vase tunicate) | |
| Product | alpha-internexin isoform X2 | |
| Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020174.2) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Ciona intestinalis Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## | |
1 | ATGGCGCCCC CAAGACCTTC AGCTTACCGT AAAAGCCTCG GACGAGATAA GGGAAAAGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq | XP_026691950.1 |
| CDS | 160..2496 |
| Translation |
Target ORF information:
Target ORF information:
|
XM_026836149.1 |
1 | ATGGCGCCCC CAAGACCTTC AGCTTACCGT AAAAGCCTCG GACGAGATAA GGGAAAAGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
An integrated database of the ascidian, Ciona intestinalis: towards functional genomics. |
The genome of the early chordate Ciona intestinalis encodes only five cytoplasmic intermediate filament proteins including a single type I and type II keratin and a unique IF-annexin fusion protein. |
A cDNA resource from the basal chordate Ciona intestinalis. |
Cytoplasmic intermediate filament protein expression in tunicate development: a specific marker for the test cells. |