| Gene Symbol |
dhx38 |
| Entrez Gene ID |
393850 |
| Full Name |
DEAH (Asp-Glu-Ala-His) box polypeptide 38 |
| Synonyms |
zgc:63517 |
| General protein information |
- Preferred Names
DEAH (Asp-Glu-Ala-His) box polypeptide 38
Names
pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
|
| Gene Type |
protein-coding |
| Organism |
Danio rerio(zebrafish) |
mRNA and Protein(s)
| mRNA |
Protein |
Name |
| NM_200876.1 |
NP_957170.1 |
pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 |
| Pan troglodytes (chimpanzee) |
DHX38 |
XP_511101.3 |
| Bos taurus (cattle) |
DHX38 |
NP_001069266.1 |
| Mus musculus (house mouse) |
Dhx38 |
NP_848467.1 |
| Danio rerio (zebrafish) |
dhx38 |
NP_957170.1 |
| Saccharomyces cerevisiae (baker's yeast) |
PRP16 |
NP_013012.3 |
| Kluyveromyces lactis |
KLLA0A07733g |
XP_451344.1 |
| Eremothecium gossypii |
AGOS_ADR224W |
NP_984320.1 |
| Oryza sativa (rice) |
Os07g0508000 |
NP_001059742.1 |
| Xenopus tropicalis (tropical clawed frog) |
dhx38 |
XP_002937626.2 |
|
DHX38 |
XP_001097681.2 |
| Canis lupus familiaris (dog) |
DHX38 |
XP_005620809.1 |
| Gallus gallus (chicken) |
DHX38 |
NP_001025753.1 |
| Caenorhabditis elegans (roundworm) |
mog-1 |
NP_499212.1 |
| Schizosaccharomyces pombe (fission yeast) |
prp16 |
NP_595890.2 |
| Rattus norvegicus (Norway rat) |
Dhx38 |
NP_001099655.1 |
| Anopheles gambiae (African malaria mosquito) |
AgaP_AGAP008528 |
XP_316912.4 |
| Homo sapiens (human) |
DHX38 |
NP_054722.2 |
| Drosophila melanogaster (fruit fly) |
l(1)G0007 |
NP_572947.1 |
| Magnaporthe oryzae (rice blast fungus) |
MGG_11351 |
XP_003713740.1 |
| Neurospora crassa |
NCU02728 |
XP_965113.1 |
| Arabidopsis thaliana (thale cress) |
EMB3011 |
NP_196805.2 |
Related articles in PubMed
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following dhx38 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the dhx38 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
| CloneID |
ODa34174 |
| Clone ID Related Accession (Same CDS sequence) |
NM_200876.1
|
| Accession Version |
NM_200876.1 Latest version! |
Documents for ORF clone product in default vector |
| Sequence Information |
ORF Nucleotide Sequence (Length: 3777bp)
Protein sequence
SNP |
| Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
 User Manual |
| Clone information |
Clone Map |
MSDS |
| Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
| ORF Insert Method |
CloneEZ™ Seamless cloning technology |
| Insert Structure |
linear |
| Update Date |
2017-08-05 |
| Organism |
Danio rerio(zebrafish) |
| Product |
pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 |
| Comment |
Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC063744.1.
##Evidence-Data-START##
Transcript exon combination :: BC063744.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168448 [ECO:0000348]
##Evidence-Data-END##
|
1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801
1861
1921
1981
2041
2101
2161
2221
2281
2341
2401
2461
2521
2581
2641
2701
2761
2821
2881
2941
3001
3061
3121
3181
3241
3301
3361
3421
3481
3541
3601
3661
3721
| ATGGACGATG ATTCCTCCCT GCACCGGCTA GAAGGCAGTG ACCCGAGTGT TCAGGTCGGG
GGTCTGATAG TGAAGAAGAA AAGCGCTGCA ACAGAACAGC ACGTGTTCAG AGCCCCCGCT
CCACGCACCT CGCTGCTGGG TCTCGATCTG CTCGCTGCGC AGAAACGCAA GGAGCGAGAG
GGCAAGGAGA GGCTGGATGA TCAGCCCAAG AAATCCAAAG TGTCATCCTA CAAAGACTGG
GAAGAGGGGA AAAGTGATTC GGGGTCTGAT GATGAAAATC AGGAGGATGG AGAGAGCAGG
AATGGGAAAA AAGAAAGGAA GTACAGAGTC ACTGGCTCAG AAACGCCTTC AAACCCTGGA
GGAGTCAGTG AGGAGTTCAA GAGGAAACAC CAGCAGAGAG AGAAAGACCG ACGTGAACAT
GGGGTTTACG CTTCATCCAA AGAGGACAAG AGCAAAGACA AGAACAGATC CAGAGACAGA
GAGCACGACC GCCATCGGGA CAGAGAGAGG AGAAAAGACA GAGATGAGCG TGAGAGCAGC
CGCAGCCGTG GATCCTCTAG CAGTCGCTCT GAGCGCAGTG AAGGCAGTGT AAGGAGTGAA
CGCTCTCAGA GAGAAGGCTG TTCTGAGCGC ATGAGCCGCG GAACCCGCCG CGAGGAGCCT
GAATCACCCC GAAACAAACC TAAAGACTTG GCCACTCCGT CGCGCTGCAG CTGGGATGAA
GATGACAGTG GATATGCCAG TTCACGCCAC TCCCACTGGG AGAGTCCGTC TCCTGCCCCC
TCACACCGGG AGAATGACCG CTCTGAACGC AGCCAGCGCT CAGTGCGGGA CAGCGAGAGA
AGAGACAGAT CAAGTAAACC TCAGTATCCT ACCGATACTC CACTACCGAC CCCATCATAC
AAGTACAACG AGTGGGCCAA TGACCGAAAG CATTTTGGCT CCACACCACG TCTGTCCCGC
GGGAAAGGAG AGAAGAGAGA GGAGGGAGAG GGTGGCATCC AATTTGACGA TGAAGATGAG
AAGGAGCAGT GGGAGGAAGA TCAGCGGCAA GCGGATCGAG ACTGGTACAT GATGGATGAA
GGTTATGACG AGTTTCACAA CCCACTGACA TCCAGCTCAG ACGAATATGT GAAGAAGCGG
GAGCAGATCC TGCAGAAACA GACCCAGAAA CGCATCTCGG CACAGAAAAG ACAAATCAAT
GAGGATAACG AACGCTGGGA GACGAACCGC ATGCTCACCA GTGGAGTGGT TCAGCGTCTG
GAGGTGGATG AGGATTTTGA GGAAGACAAC GCAGCCCGAG TTCATTTACT TGTGCATAAC
CTTGTGCCAC CCTTCCTCGA TGGGAGGATT GTCTTCACTA AACAGCCTGA GCCGGTCATT
CCAGTGAAAG ATGCGACCTC AGACATGGCC ATCATCTCCC GTAAAGGCAG TCAACTGGTG
CGACGCCACC GAGAGCAGAA AGAGAGAAAG AAGGCACAGC ACAAACACTG GGAGCTCGCT
GGCACCAAAC TGGGTGACAT CATGGGAATC CAAAAAAAAG AGGATGGGGG AGACAGTAAA
GCTGTTGGAG AAGATGGAAA AGTGGATTAC AGAGCCGAGC AGAAGTTTGC TGATCACATG
AAGGAGAAGA GTGAAGCGAG CAGTGACTTT GCCAAGAAGA AGACTCTGTT AGAGCAGAGA
CAGTATCTGC CCATCTTTGC TGTTCGCCAG CAGCTGCTCA ACATCATCAG GGATAACAAT
ATTGTGATAG TGGTGGGTGA AACGGGCAGT GGTAAGACGA CGCAGCTAAC GCAGTATCTT
CATGAGGACG GTTACACCAG CTATGGTATG GTGGGCTGCA CACAACCCCG CAGAGTGGCA
GCCATGAGTG TGGCTAAGAG AGTCAGCGAA GAGATGAACA GTAATCTGGG AGAGGAGGTT
GGTTATGCCA TCCGTTTTGA AGACTGTACA TCAGAGAAGA CAATGATCAA GTACATGACG
GATGGGATTC TCCTGAGGGA GTCTCTGCGG GAGTCAGATC TGGATCACTA TAGTGCAGTA
ATCATGGACG AGGCCCACGA GCGCTCCCTC AACACTGATG TACTCTTCGG GCTGCTTCGA
GAGGTGGTGT CAAGACGCTC CGACTTGAAG CTTATTGTCA CATCTGCCAC CATGGACTCA
GACAAATTTG CGTCATTCTT CGGCAATGTT CCTATTTTCC ACATTCCCGG CAGGACTTTC
CCAGTGGATA TCTTGTTCAG CAAGACTCCT CAGGAGGACT ATGTGGAGGC GGCTGTGAAA
CAGGCCTTGC AGATTCATCT CAGCGGGATG GTGGGTGACA TCCTCATCTT CATGCCTGGT
CAGGAGGACA TCGAGGTGAC GTCAGATCAG ATTGTGGAAC GGTTGGCCGA TCTAGAGAAC
GCTCCAGCCC TGGCAGTGCT GCCCATCTAC TCCCAGCTGC CCTCAGACCT GCAGGCCAAG
ATCTTCCAGA AGGCTCCTGA TGGAGTGAGG AAATGTATTG TTGCTACAAA CATCGCTGAG
ACGTCTCTGA CAGTGGACGG CATCATGTTT GTGGTGGATT CCGGCTATTG TAAACTGAAG
GTGTTCAACC CTCGCATTGG CATGGATGCG CTTCAGGTTT ACCCCATCAG TCAAGCTAAT
GCAAACCAGC GGGCTGGTAG AGCAGGCAGA ACAGGCCCAG GACAGTGTTA CAGGTTATAC
ACACAGAGCG CCTTCAAGAA TGAAATGCTG ACCACCACTA TTCCAGAGAT TCAGCGCACT
AACCTGGCTA ATGTTGTGCT TTTGCTCAAG TCACTGGGAG TTCAAGACCT CCTGCTCTTC
CACTTCATGG ACCCGCCCCC AGAAGACAAC ATGCTGAACT CCATGTATCA GCTGTGGATC
TTGGGTGCAC TCGACAATAC AGGCGCTCTG ACACCCACCG GGCGGCTCAT GGTGGAGTTT
CCTCTGGATC CGGCTCTGTC TAAAATGCTG ATCGTGTCTT GTGACATGAG CTGCAGTGCT
GACATCCTCA TCATCGTCTC CATGTTGTCT GTGCCGTCCA TCTTCTACAG GCCAAAGGGT
CGAGAGGAGG AAAGTGACCA GGTCAGAGAG AAGTTCTCCG TGCCTGAGAG TGACCATCTG
ACCTACCTCA ACGTTTACCT GCAGTGGAAG AACAACAATT ATTCCAGCAT CTGGTGCAAT
GATCACTTCA TTCACACCAA AGCCATGCGG AAGGTGCGTG AGGTGCGAGC TCAGCTCAAA
GACATCATGG TGCAGCAGAA AATGAATCTG ATCTCCTGCG GTTCAGACTG GGACGTGATC
AGGAAGTGCA TCTGTGCTGC ATACTTTCAC CAGGCTGCTA AATTAAAGGG AATTGGAGAG
TATGTGAATG TGAGAACCGG GATGCCCTGT CATCTGCACC CCACCAGCGC TTTGTTCGGG
ATGGGCTACA CCCCTGACTA CATCATCTAC CATGAACTGG TCATGACCAC AAAGGAGTAC
ATGCAGTGTG TGACGGCAGT GGATGGTGAG TGGCTGGCTG AGCTGGGACC AATGTTCTAC
AGCATCAAAC ACGCAGGGAA GAGCAGACAG GAGAACCGAA GGAGAGCCAA AGAGGAGATC
ACCAACATGG AGGAGGAGAT GTCTCTGGCA CAAGAGCAGA TCCGAGCGCG GAAAGAGGAG
CAGGACAGGA AGAACAATCT GGGCAGCGTC AGGGCCGTGA AGATCTGCAC CCCAGGAAGG
AAAGAGGAAA TGACGCCGAT GACGCCCAAA CGAACGCCGG CCCGGTTTGG CTTATAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
| RefSeq |
NP_957170.1 |
| CDS | 197..3973 |
| Translation | |
Target ORF information:
| RefSeq Version | NM_200876.1 |
| Organism | Danio rerio(zebrafish) |
| Definition | Danio rerio DEAH (Asp-Glu-Ala-His) box polypeptide 38 (dhx38), mRNA. |
Target ORF information:
| Epitope | DYKDDDDK |
| Bacterial selection | AMPR |
| Mammalian selection | NeoR |
| Vector | pcDNA3.1+/C-(K)DYK |
|
 NM_200876.1 |
ORF Insert Sequence:
1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
1141
1201
1261
1321
1381
1441
1501
1561
1621
1681
1741
1801
1861
1921
1981
2041
2101
2161
2221
2281
2341
2401
2461
2521
2581
2641
2701
2761
2821
2881
2941
3001
3061
3121
3181
3241
3301
3361
3421
3481
3541
3601
3661
3721
| ATGGACGATG ATTCCTCCCT GCACCGGCTA GAAGGCAGTG ACCCGAGTGT TCAGGTCGGG
GGTCTGATAG TGAAGAAGAA AAGCGCTGCA ACAGAACAGC ACGTGTTCAG AGCCCCCGCT
CCACGCACCT CGCTGCTGGG TCTCGATCTG CTCGCTGCGC AGAAACGCAA GGAGCGAGAG
GGCAAGGAGA GGCTGGATGA TCAGCCCAAG AAATCCAAAG TGTCATCCTA CAAAGACTGG
GAAGAGGGGA AAAGTGATTC GGGGTCTGAT GATGAAAATC AGGAGGATGG AGAGAGCAGG
AATGGGAAAA AAGAAAGGAA GTACAGAGTC ACTGGCTCAG AAACGCCTTC AAACCCTGGA
GGAGTCAGTG AGGAGTTCAA GAGGAAACAC CAGCAGAGAG AGAAAGACCG ACGTGAACAT
GGGGTTTACG CTTCATCCAA AGAGGACAAG AGCAAAGACA AGAACAGATC CAGAGACAGA
GAGCACGACC GCCATCGGGA CAGAGAGAGG AGAAAAGACA GAGATGAGCG TGAGAGCAGC
CGCAGCCGTG GATCCTCTAG CAGTCGCTCT GAGCGCAGTG AAGGCAGTGT AAGGAGTGAA
CGCTCTCAGA GAGAAGGCTG TTCTGAGCGC ATGAGCCGCG GAACCCGCCG CGAGGAGCCT
GAATCACCCC GAAACAAACC TAAAGACTTG GCCACTCCGT CGCGCTGCAG CTGGGATGAA
GATGACAGTG GATATGCCAG TTCACGCCAC TCCCACTGGG AGAGTCCGTC TCCTGCCCCC
TCACACCGGG AGAATGACCG CTCTGAACGC AGCCAGCGCT CAGTGCGGGA CAGCGAGAGA
AGAGACAGAT CAAGTAAACC TCAGTATCCT ACCGATACTC CACTACCGAC CCCATCATAC
AAGTACAACG AGTGGGCCAA TGACCGAAAG CATTTTGGCT CCACACCACG TCTGTCCCGC
GGGAAAGGAG AGAAGAGAGA GGAGGGAGAG GGTGGCATCC AATTTGACGA TGAAGATGAG
AAGGAGCAGT GGGAGGAAGA TCAGCGGCAA GCGGATCGAG ACTGGTACAT GATGGATGAA
GGTTATGACG AGTTTCACAA CCCACTGACA TCCAGCTCAG ACGAATATGT GAAGAAGCGG
GAGCAGATCC TGCAGAAACA GACCCAGAAA CGCATCTCGG CACAGAAAAG ACAAATCAAT
GAGGATAACG AACGCTGGGA GACGAACCGC ATGCTCACCA GTGGAGTGGT TCAGCGTCTG
GAGGTGGATG AGGATTTTGA GGAAGACAAC GCAGCCCGAG TTCATTTACT TGTGCATAAC
CTTGTGCCAC CCTTCCTCGA TGGGAGGATT GTCTTCACTA AACAGCCTGA GCCGGTCATT
CCAGTGAAAG ATGCGACCTC AGACATGGCC ATCATCTCCC GTAAAGGCAG TCAACTGGTG
CGACGCCACC GAGAGCAGAA AGAGAGAAAG AAGGCACAGC ACAAACACTG GGAGCTCGCT
GGCACCAAAC TGGGTGACAT CATGGGAATC CAAAAAAAAG AGGATGGGGG AGACAGTAAA
GCTGTTGGAG AAGATGGAAA AGTGGATTAC AGAGCCGAGC AGAAGTTTGC TGATCACATG
AAGGAGAAGA GTGAAGCGAG CAGTGACTTT GCCAAGAAGA AGACTCTGTT AGAGCAGAGA
CAGTATCTGC CCATCTTTGC TGTTCGCCAG CAGCTGCTCA ACATCATCAG GGATAACAAT
ATTGTGATAG TGGTGGGTGA AACGGGCAGT GGTAAGACGA CGCAGCTAAC GCAGTATCTT
CATGAGGACG GTTACACCAG CTATGGTATG GTGGGCTGCA CACAACCCCG CAGAGTGGCA
GCCATGAGTG TGGCTAAGAG AGTCAGCGAA GAGATGAACA GTAATCTGGG AGAGGAGGTT
GGTTATGCCA TCCGTTTTGA AGACTGTACA TCAGAGAAGA CAATGATCAA GTACATGACG
GATGGGATTC TCCTGAGGGA GTCTCTGCGG GAGTCAGATC TGGATCACTA TAGTGCAGTA
ATCATGGACG AGGCCCACGA GCGCTCCCTC AACACTGATG TACTCTTCGG GCTGCTTCGA
GAGGTGGTGT CAAGACGCTC CGACTTGAAG CTTATTGTCA CATCTGCCAC CATGGACTCA
GACAAATTTG CGTCATTCTT CGGCAATGTT CCTATTTTCC ACATTCCCGG CAGGACTTTC
CCAGTGGATA TCTTGTTCAG CAAGACTCCT CAGGAGGACT ATGTGGAGGC GGCTGTGAAA
CAGGCCTTGC AGATTCATCT CAGCGGGATG GTGGGTGACA TCCTCATCTT CATGCCTGGT
CAGGAGGACA TCGAGGTGAC GTCAGATCAG ATTGTGGAAC GGTTGGCCGA TCTAGAGAAC
GCTCCAGCCC TGGCAGTGCT GCCCATCTAC TCCCAGCTGC CCTCAGACCT GCAGGCCAAG
ATCTTCCAGA AGGCTCCTGA TGGAGTGAGG AAATGTATTG TTGCTACAAA CATCGCTGAG
ACGTCTCTGA CAGTGGACGG CATCATGTTT GTGGTGGATT CCGGCTATTG TAAACTGAAG
GTGTTCAACC CTCGCATTGG CATGGATGCG CTTCAGGTTT ACCCCATCAG TCAAGCTAAT
GCAAACCAGC GGGCTGGTAG AGCAGGCAGA ACAGGCCCAG GACAGTGTTA CAGGTTATAC
ACACAGAGCG CCTTCAAGAA TGAAATGCTG ACCACCACTA TTCCAGAGAT TCAGCGCACT
AACCTGGCTA ATGTTGTGCT TTTGCTCAAG TCACTGGGAG TTCAAGACCT CCTGCTCTTC
CACTTCATGG ACCCGCCCCC AGAAGACAAC ATGCTGAACT CCATGTATCA GCTGTGGATC
TTGGGTGCAC TCGACAATAC AGGCGCTCTG ACACCCACCG GGCGGCTCAT GGTGGAGTTT
CCTCTGGATC CGGCTCTGTC TAAAATGCTG ATCGTGTCTT GTGACATGAG CTGCAGTGCT
GACATCCTCA TCATCGTCTC CATGTTGTCT GTGCCGTCCA TCTTCTACAG GCCAAAGGGT
CGAGAGGAGG AAAGTGACCA GGTCAGAGAG AAGTTCTCCG TGCCTGAGAG TGACCATCTG
ACCTACCTCA ACGTTTACCT GCAGTGGAAG AACAACAATT ATTCCAGCAT CTGGTGCAAT
GATCACTTCA TTCACACCAA AGCCATGCGG AAGGTGCGTG AGGTGCGAGC TCAGCTCAAA
GACATCATGG TGCAGCAGAA AATGAATCTG ATCTCCTGCG GTTCAGACTG GGACGTGATC
AGGAAGTGCA TCTGTGCTGC ATACTTTCAC CAGGCTGCTA AATTAAAGGG AATTGGAGAG
TATGTGAATG TGAGAACCGG GATGCCCTGT CATCTGCACC CCACCAGCGC TTTGTTCGGG
ATGGGCTACA CCCCTGACTA CATCATCTAC CATGAACTGG TCATGACCAC AAAGGAGTAC
ATGCAGTGTG TGACGGCAGT GGATGGTGAG TGGCTGGCTG AGCTGGGACC AATGTTCTAC
AGCATCAAAC ACGCAGGGAA GAGCAGACAG GAGAACCGAA GGAGAGCCAA AGAGGAGATC
ACCAACATGG AGGAGGAGAT GTCTCTGGCA CAAGAGCAGA TCCGAGCGCG GAAAGAGGAG
CAGGACAGGA AGAACAATCT GGGCAGCGTC AGGGCCGTGA AGATCTGCAC CCCAGGAAGG
AAAGAGGAAA TGACGCCGAT GACGCCCAAA CGAACGCCGG CCCGGTTTGG CTTATAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
 |
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J |
