Gene Symbol |
tbpl2 |
Entrez Gene ID |
407713 |
Full Name |
TATA box binding protein like 2 |
Synonyms |
tbp2,trf3 |
General protein information |
- Preferred Names
TATA box binding protein like 2
Names
TATA box-binding protein-like protein 2 TATA-binding protein 2
|
Gene Type |
protein-coding |
Organism |
Danio rerio(zebrafish) |
mRNA and Protein(s)
mRNA |
Protein |
Name |
XM_005169810.3 |
XP_005169867.1 |
TATA box-binding protein-like protein 2 isoform X1 |
XM_005169810.4 |
XP_005169867.1 |
TATA box-binding protein-like protein 2 isoform X1 |
NM_214796.1 |
NP_999961.1 |
TATA box-binding protein-like protein 2 |
Pan troglodytes (chimpanzee) |
TBPL2 |
XP_003952543.1 |
Bos taurus (cattle) |
TBPL2 |
XP_002690959.2 |
Oryza sativa (rice) |
Os03g0657000 |
NP_001050812.1 |
Arabidopsis thaliana (thale cress) |
TBP2 |
NP_849812.1 |
Arabidopsis thaliana (thale cress) |
TBP1 |
NP_187953.1 |
Mus musculus (house mouse) |
Tbpl2 |
NP_951014.1 |
Gallus gallus (chicken) |
TBPL2 |
NP_001092323.1 |
Xenopus tropicalis (tropical clawed frog) |
tbpl2 |
NP_001017309.1 |
Homo sapiens (human) |
TBPL2 |
NP_950248.1 |
Canis lupus familiaris (dog) |
TBPL2 |
XP_005623974.1 |
Rattus norvegicus (Norway rat) |
Tbpl2 |
NP_001092831.1 |
Oryza sativa (rice) |
Os12g0580300 |
NP_001067128.1 |
|
LOC697371 |
XP_001088740.1 |
Danio rerio (zebrafish) |
tbpl2 |
NP_999961.1 |
Related articles in PubMed
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)
Galectins in channel catfish, Ictalurus punctatus: Characterization and expression profiling in mucosal tissues.
Zhou S, Zhao H, Thongda W, Zhang D, Su B, Yu D, Peatman E, Li C
Fish & shellfish immunology49324-35(2016 Feb)
Protein Arginine Methyltransferase 6 (Prmt6) Is Essential for Early Zebrafish Development through the Direct Suppression of gadd45?a Stress Sensor Gene.
Zhao XX, Zhang YB, Ni PL, Wu ZL, Yan YC, Li YP
The Journal of biological chemistry291(1)402-12(2016 Jan)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following tbpl2 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the tbpl2 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID |
ODa22273 |
Clone ID Related Accession (Same CDS sequence) |
XM_005169810.3
, XM_005169810.4
|
Accession Version |
XM_005169810.3 |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 942bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2016-06-23 |
Organism |
Danio rerio(Zebrafish) |
Product |
TATA box-binding protein-like protein 2 isoform X1 |
Comment |
MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007128.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process
On Jun 24, 2016 this sequence version replaced XM_005169810.2.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Danio rerio Annotation Release 105
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 7.1
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
|
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901
| ATGAACATGG ATGAGGAGGC ATCCCTCGAA AGTTACTTTG ACCAGACTAT TGCTGGCTCA TCTGATTATA TCTTTGAAGG GGATCTGGGT CTGCAGGGTT CGACTTCGCA GCTCCAGGAT TCCTCTTTTC TGTCCTCTTT AGCGTCTCAG GAGAAAGATC TGACAGAGGA CTTGGACCTG AGCTTCTTAC CTGATGAACT GAGCACTCAA GATGAGCCGT CACAAGTTGA GAAAGAAAGC AAGAATGAAG ACAGCGGCAT CTACACCGAC TGCCCGCAGA AAGAGTCCAC ACAGGCAGAC ATTGACACCA GTAATTCGGC CCAAAATACC TCACAGTTCA ACCTCCCGAT GACTCCCATG ACCCCGATGA CTCCCATGAC CCCGGTGGCA GAGAGTTCAG GCATCATCCC GCAATTACAG AATATTGTGT CAACTGTGAA TCTTGCTTGC CCTCTGGATC TCAAATCCAT TGCACTTCAA GCTCGAAATG CTGAATACAA CCCAAAGCGT TTTGCTGCTG TTATAATGAG GATCCGTGAA CCAAGAACTA CGGCTCTCAT TTTCAGCTCT GGAAAAATGG TCTGCACTGG AGCCAAGAGT AGTGAAGAGC AATCTCGCCT CGCTGCACGG AAATATGCTC GGGTGGTACA GAAACTTGGT TTTCCTGCCA AATTCCTCGA CTTCAAAATT CAAAATATGG TTGGGAGTTG TGACGTCTGC TTTCCTATAC GCTTGGAAGG CCTGGTCCTC ACTCATCAGC AGTTCAGCAG CTACGAGCCC GAGTTGTTTC CAGGTTTGAT ATATCGCATG GTGAAACCAC GTATTGTGCT GCTGATTTTT GTGTCTGGAA AAGTTGTGCT CACAGGTGCA AAAGAGCGGT CCGAGATCTA TGAAGCCTTT GAAAATATTT ACCCCATCCT GAAAGGATTT AGGAAGCAAT AG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
XP_005169867.1 |
CDS | 378..1319 |
Translation | |
Target ORF information:
RefSeq Version | XM_005169810.3 |
Organism | Danio rerio(Zebrafish) |
Definition | Danio rerio TATA box binding protein like 2 (tbpl2), transcript variant X1, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
XM_005169810.3 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901
| ATGAACATGG ATGAGGAGGC ATCCCTCGAA AGTTACTTTG ACCAGACTAT TGCTGGCTCA TCTGATTATA TCTTTGAAGG GGATCTGGGT CTGCAGGGTT CGACTTCGCA GCTCCAGGAT TCCTCTTTTC TGTCCTCTTT AGCGTCTCAG GAGAAAGATC TGACAGAGGA CTTGGACCTG AGCTTCTTAC CTGATGAACT GAGCACTCAA GATGAGCCGT CACAAGTTGA GAAAGAAAGC AAGAATGAAG ACAGCGGCAT CTACACCGAC TGCCCGCAGA AAGAGTCCAC ACAGGCAGAC ATTGACACCA GTAATTCGGC CCAAAATACC TCACAGTTCA ACCTCCCGAT GACTCCCATG ACCCCGATGA CTCCCATGAC CCCGGTGGCA GAGAGTTCAG GCATCATCCC GCAATTACAG AATATTGTGT CAACTGTGAA TCTTGCTTGC CCTCTGGATC TCAAATCCAT TGCACTTCAA GCTCGAAATG CTGAATACAA CCCAAAGCGT TTTGCTGCTG TTATAATGAG GATCCGTGAA CCAAGAACTA CGGCTCTCAT TTTCAGCTCT GGAAAAATGG TCTGCACTGG AGCCAAGAGT AGTGAAGAGC AATCTCGCCT CGCTGCACGG AAATATGCTC GGGTGGTACA GAAACTTGGT TTTCCTGCCA AATTCCTCGA CTTCAAAATT CAAAATATGG TTGGGAGTTG TGACGTCTGC TTTCCTATAC GCTTGGAAGG CCTGGTCCTC ACTCATCAGC AGTTCAGCAG CTACGAGCCC GAGTTGTTTC CAGGTTTGAT ATATCGCATG GTGAAACCAC GTATTGTGCT GCTGATTTTT GTGTCTGGAA AAGTTGTGCT CACAGGTGCA AAAGAGCGGT CCGAGATCTA TGAAGCCTTT GAAAATATTT ACCCCATCCT GAAAGGATTT AGGAAGCAAT AG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
ODa22273 |
Clone ID Related Accession (Same CDS sequence) |
XM_005169810.3
, XM_005169810.4
|
Accession Version |
XM_005169810.4 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 942bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2017-06-14 |
Organism |
Danio rerio(zebrafish) |
Product |
TATA box-binding protein-like protein 2 isoform X1 |
Comment |
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007128.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process
On Jun 15, 2017 this sequence version replaced XM_005169810.3.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Danio rerio Annotation Release 106
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 7.4
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
|
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901
| ATGAACATGG ATGAGGAGGC ATCCCTCGAA AGTTACTTTG ACCAGACTAT TGCTGGCTCA TCTGATTATA TCTTTGAAGG GGATCTGGGT CTGCAGGGTT CGACTTCGCA GCTCCAGGAT TCCTCTTTTC TGTCCTCTTT AGCGTCTCAG GAGAAAGATC TGACAGAGGA CTTGGACCTG AGCTTCTTAC CTGATGAACT GAGCACTCAA GATGAGCCGT CACAAGTTGA GAAAGAAAGC AAGAATGAAG ACAGCGGCAT CTACACCGAC TGCCCGCAGA AAGAGTCCAC ACAGGCAGAC ATTGACACCA GTAATTCGGC CCAAAATACC TCACAGTTCA ACCTCCCGAT GACTCCCATG ACCCCGATGA CTCCCATGAC CCCGGTGGCA GAGAGTTCAG GCATCATCCC GCAATTACAG AATATTGTGT CAACTGTGAA TCTTGCTTGC CCTCTGGATC TCAAATCCAT TGCACTTCAA GCTCGAAATG CTGAATACAA CCCAAAGCGT TTTGCTGCTG TTATAATGAG GATCCGTGAA CCAAGAACTA CGGCTCTCAT TTTCAGCTCT GGAAAAATGG TCTGCACTGG AGCCAAGAGT AGTGAAGAGC AATCTCGCCT CGCTGCACGG AAATATGCTC GGGTGGTACA GAAACTTGGT TTTCCTGCCA AATTCCTCGA CTTCAAAATT CAAAATATGG TTGGGAGTTG TGACGTCTGC TTTCCTATAC GCTTGGAAGG CCTGGTCCTC ACTCATCAGC AGTTCAGCAG CTACGAGCCC GAGTTGTTTC CAGGTTTGAT ATATCGCATG GTGAAACCAC GTATTGTGCT GCTGATTTTT GTGTCTGGAA AAGTTGTGCT CACAGGTGCA AAAGAGCGGT CCGAGATCTA TGAAGCCTTT GAAAATATTT ACCCCATCCT GAAAGGATTT AGGAAGCAAT AG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
XP_005169867.1 |
CDS | 343..1284 |
Translation | |
Target ORF information:
RefSeq Version | XM_005169810.4 |
Organism | Danio rerio(zebrafish) |
Definition | Danio rerio TATA box binding protein like 2 (tbpl2), transcript variant X1, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
XM_005169810.4 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901
| ATGAACATGG ATGAGGAGGC ATCCCTCGAA AGTTACTTTG ACCAGACTAT TGCTGGCTCA TCTGATTATA TCTTTGAAGG GGATCTGGGT CTGCAGGGTT CGACTTCGCA GCTCCAGGAT TCCTCTTTTC TGTCCTCTTT AGCGTCTCAG GAGAAAGATC TGACAGAGGA CTTGGACCTG AGCTTCTTAC CTGATGAACT GAGCACTCAA GATGAGCCGT CACAAGTTGA GAAAGAAAGC AAGAATGAAG ACAGCGGCAT CTACACCGAC TGCCCGCAGA AAGAGTCCAC ACAGGCAGAC ATTGACACCA GTAATTCGGC CCAAAATACC TCACAGTTCA ACCTCCCGAT GACTCCCATG ACCCCGATGA CTCCCATGAC CCCGGTGGCA GAGAGTTCAG GCATCATCCC GCAATTACAG AATATTGTGT CAACTGTGAA TCTTGCTTGC CCTCTGGATC TCAAATCCAT TGCACTTCAA GCTCGAAATG CTGAATACAA CCCAAAGCGT TTTGCTGCTG TTATAATGAG GATCCGTGAA CCAAGAACTA CGGCTCTCAT TTTCAGCTCT GGAAAAATGG TCTGCACTGG AGCCAAGAGT AGTGAAGAGC AATCTCGCCT CGCTGCACGG AAATATGCTC GGGTGGTACA GAAACTTGGT TTTCCTGCCA AATTCCTCGA CTTCAAAATT CAAAATATGG TTGGGAGTTG TGACGTCTGC TTTCCTATAC GCTTGGAAGG CCTGGTCCTC ACTCATCAGC AGTTCAGCAG CTACGAGCCC GAGTTGTTTC CAGGTTTGAT ATATCGCATG GTGAAACCAC GTATTGTGCT GCTGATTTTT GTGTCTGGAA AAGTTGTGCT CACAGGTGCA AAAGAGCGGT CCGAGATCTA TGAAGCCTTT GAAAATATTT ACCCCATCCT GAAAGGATTT AGGAAGCAAT AG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
ODa37842 |
Clone ID Related Accession (Same CDS sequence) |
NM_214796.1
|
Accession Version |
NM_214796.1 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 939bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2019-10-25 |
Organism |
Danio rerio(zebrafish) |
Product |
TATA box-binding protein-like protein 2 |
Comment |
Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY256970.1.
##Evidence-Data-START##
Transcript exon combination :: AY256970.1, BC116553.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns SAMEA898400 [ECO:0000348]
##Evidence-Data-END##
|
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901
| ATGAACATGG ATGAGGAGGC ATCCCTCGAA AGTTACTTTG ACCAGACTAT TGCTGGCTCA TCTGATTATA TCTTTGAAGG GGATCTGGGT CTGMAGGGTT CGACTTCGCA GCTCCAGGAT TCCTCTTTTC TGTCCTCTTT AGCGTCTCAG GAGAAAGATC TGACAGAGGA CTTGGACCTG AGCTTCTTAC CTGATGAACT GAGCACTCAA GATGAGCCGT CACAAGTTGA GAAAGAAAGC AAGAATGAAG ACAGCGGCAT CTACACCGAC TGCCCGCAGA AAGAGTCCAC ACAGGCAGAC ATTGACWCCA GTAATTCGGC CCAAAATACC TCACAGTTCA AYCTCCCGAT GACGCCCATG ACCCCGATGA CTCCCATGAC CCCGGTGGCA GAGAGTTCAG GCATCATCCC GCAATTACAG AATATTGTGT CAACTGTGAA TCTTGCTTGC CCTCTGGATC TCAAATCCAT TGCACTTCAA GCTCGAAATG CTGAATACAA CCCAAAGCGT TTTGCTGCTG TTATAATGAG GATCCGTGAA CCAAGAACTA CTGCTCTCAT TTTCAGCTCT GGAAAAATGG TCTGCACTGG AGCCAAGAGT GAAGAGCAAT CTCGCCTCGC TGCACGGAAA TATGCTCGGG TGGTACAGAA ACTTGGTTTT CCTGCCAAAT TCCTCGACTT CAAAATTCAA AATATGGTTG GGAGTTGTGA CGTCTGCTTT CCTATACGCT TGGAAGGCCT GGTCCTCACT CATCAGCAGT TCAGCAGCTA CGAGCCCGAG TTGTTTCCAG GTTTGATATA TCGCATGGTG AAACCACGTA TTGTGCTGCT GATTTTTGTG TCTGGAAAAG TTGTGCTCAC AGGTGCAAAA GAGCGCTCTG AGATCTATGA AGCCTTTGAA AATATTTACC CCATCCTGAA AGGATTTAGG AAGCAATAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
NP_999961.1 |
CDS | 318..1256 |
Translation | |
Target ORF information:
RefSeq Version | NM_214796.1 |
Organism | Danio rerio(zebrafish) |
Definition | Danio rerio TATA box binding protein like 2 (tbpl2), mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
NM_214796.1 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901
| ATGAACATGG ATGAGGAGGC ATCCCTCGAA AGTTACTTTG ACCAGACTAT TGCTGGCTCA TCTGATTATA TCTTTGAAGG GGATCTGGGT CTGMAGGGTT CGACTTCGCA GCTCCAGGAT TCCTCTTTTC TGTCCTCTTT AGCGTCTCAG GAGAAAGATC TGACAGAGGA CTTGGACCTG AGCTTCTTAC CTGATGAACT GAGCACTCAA GATGAGCCGT CACAAGTTGA GAAAGAAAGC AAGAATGAAG ACAGCGGCAT CTACACCGAC TGCCCGCAGA AAGAGTCCAC ACAGGCAGAC ATTGACWCCA GTAATTCGGC CCAAAATACC TCACAGTTCA AYCTCCCGAT GACGCCCATG ACCCCGATGA CTCCCATGAC CCCGGTGGCA GAGAGTTCAG GCATCATCCC GCAATTACAG AATATTGTGT CAACTGTGAA TCTTGCTTGC CCTCTGGATC TCAAATCCAT TGCACTTCAA GCTCGAAATG CTGAATACAA CCCAAAGCGT TTTGCTGCTG TTATAATGAG GATCCGTGAA CCAAGAACTA CTGCTCTCAT TTTCAGCTCT GGAAAAATGG TCTGCACTGG AGCCAAGAGT GAAGAGCAAT CTCGCCTCGC TGCACGGAAA TATGCTCGGG TGGTACAGAA ACTTGGTTTT CCTGCCAAAT TCCTCGACTT CAAAATTCAA AATATGGTTG GGAGTTGTGA CGTCTGCTTT CCTATACGCT TGGAAGGCCT GGTCCTCACT CATCAGCAGT TCAGCAGCTA CGAGCCCGAG TTGTTTCCAG GTTTGATATA TCGCATGGTG AAACCACGTA TTGTGCTGCT GATTTTTGTG TCTGGAAAAG TTGTGCTCAC AGGTGCAAAA GAGCGCTCTG AGATCTATGA AGCCTTTGAA AATATTTACC CCATCCTGAA AGGATTTAGG AAGCAATAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
 |
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J |