c1d cDNA ORF clone, Danio rerio(zebrafish)

Gene
Clones
gRNAs

Summary

Gene Symbol	c1d
Entrez Gene ID	474329
Full Name	C1D nuclear receptor corepressor
Synonyms	zgc:103509
General protein information	Preferred Names C1D nuclear receptor corepressor Names nuclear nucleic acid-binding protein C1D C1D nuclear receptor co-repressor
Gene Type	protein-coding
Organism	Danio rerio(zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
NM_001007059.1	NP_001007060.1	nuclear nucleic acid-binding protein C1D
XM_021480568.1	XP_021336243.1	nuclear nucleic acid-binding protein C1D isoform X1

Pathways from BioSystems

Homologies

Gallus gallus (chicken)	C1D	NP_001231666.1
Pan troglodytes (chimpanzee)	C1D	XP_001167269.1
Canis lupus familiaris (dog)	C1D	XP_005626230.1
Mus musculus (house mouse)	C1d	NP_065583.2
Homo sapiens (human)	C1D	NP_001177194.1
	C1D	XP_002799338.1
Bos taurus (cattle)	C1D	NP_001032525.1
Xenopus tropicalis (tropical clawed frog)	c1d	NP_001016424.1
Danio rerio (zebrafish)	c1d	NP_001007060.1

Gene Ontology
Bibliography

Related articles in PubMed

Pharmacokinetics and effects of tetrabromobisphenol a (TBBPA) to early life stages of zebrafish (Danio rerio).
Liu H, Ma Z, Zhang T, Yu N, Su G, Giesy JP, Yu H
Chemosphere190243-252(2018 Jan)

Integrated in silico and in vivo approaches to investigate effects of BDE-99 mediated by the nuclear receptors on developing zebrafish.
Zhang L, Jin Y, Han Z, Liu H, Shi L, Hua X, Doering JA, Tang S, Giesy JP, Yu H
Environmental toxicology and chemistry(2017 Oct)

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

Differential modulation of expression of nuclear receptor mediated genes by tris(2-butoxyethyl) phosphate (TBOEP) on early life stages of zebrafish (Danio rerio).
Ma Z, Yu Y, Tang S, Liu H, Su G, Xie Y, Giesy JP, Hecker M, Yu H
Aquatic toxicology (Amsterdam, Netherlands)169196-203(2015 Dec)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following c1d gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the c1d cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
ODa03086	NM_001007059.1 Latest version!	Danio rerio C1D nuclear receptor corepressor (c1d), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$104.30 $149.00
ODa18396	XM_021480568.1 Latest version!	Danio rerio C1D nuclear receptor corepressor (c1d), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$104.30 $149.00

ORF Online Only Promotion

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

c1d ( NM_001007059.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> NP_001007060.1 Danio rerio C1D nuclear receptor corepressor (c1d), mRNA.

Price & Availability↑

CloneID	ODa03086
Clone ID Related Accession (Same CDS sequence)	NM_001007059.1
Accession Version	NM_001007059.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 447bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-01-18
Organism	Danio rerio(zebrafish)
Product	nuclear nucleic acid-binding protein C1D
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC083407.1. ##Evidence-Data-START## Transcript exon combination :: BC083407.1, EH548090.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END##

ATGGCTGATG ATGCTGCAGT AGAGGATTAT CCCACTGAAA TCGAGGACAA CCTGAACGAT 
TTCGACTCTT CTTTGAGCTC TGTCCAGAAT ATGGTCCAAA CACTGGTGTC TGTATCCAGA 
AGTGACCGTC TGCTTAAATT GGATCCTCTT GAACAAGCTA AACTGGATCT GATGTCGGCA 
TACGCCCTCA ACTCAATGTT CTGGATGTAT CTTGTGACAC AAGGAGTCAA TCCGAAAGAC 
CATCCAATCA AACAAGAACT GGAAAGAATC AGGACATACA TGAATAAAGT CAAAGAGATC 
ACGGACAGAA GAAAAGCTGC ACATATAGAC AAAGAAGCAG CGTCGCGGTT TGTGAGGAAT 
GCTCTGTGGG ATGCAGATGA CAAGAAAAGA AAGGACAAAA CTGAGCACCA ACAAAAAGGA 
AAACACACAA AGTTTACTTG GAGTTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001007060.1
CDS	38..484
Translation	MADDAAVEDYPTEIEDNLNDFDSSLSSVQNMVQTLVSVSRSDRLLKLDPLEQAKLDLMSAYALNSMFWMYLVTQGVNPKDHPIKQELERIRTYMNKVKEITDRRKAAHIDKEAASRFVRNALWDADDKKRKDKTEHQQKGKHTKFTWS

Target ORF information:

RefSeq Version	NM_001007059.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio C1D nuclear receptor corepressor (c1d), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001007059.1

ORF Insert Sequence:

ATGGCTGATG ATGCTGCAGT AGAGGATTAT CCCACTGAAA TCGAGGACAA CCTGAACGAT 
TTCGACTCTT CTTTGAGCTC TGTCCAGAAT ATGGTCCAAA CACTGGTGTC TGTATCCAGA 
AGTGACCGTC TGCTTAAATT GGATCCTCTT GAACAAGCTA AACTGGATCT GATGTCGGCA 
TACGCCCTCA ACTCAATGTT CTGGATGTAT CTTGTGACAC AAGGAGTCAA TCCGAAAGAC 
CATCCAATCA AACAAGAACT GGAAAGAATC AGGACATACA TGAATAAAGT CAAAGAGATC 
ACGGACAGAA GAAAAGCTGC ACATATAGAC AAAGAAGCAG CGTCGCGGTT TGTGAGGAAT 
GCTCTGTGGG ATGCAGATGA CAAGAAAAGA AAGGACAAAA CTGAGCACCA ACAAAAAGGA 
AAACACACAA AGTTTACTTG GAGTTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

c1d ( XM_021480568.1 ) cDNA ORF clone, Danio rerio(zebrafish) -> XP_021336243.1 Danio rerio C1D nuclear receptor corepressor (c1d), transcript variant X1, mRNA.

Price & Availability↑

CloneID	ODa18396
Clone ID Related Accession (Same CDS sequence)	XM_021480568.1
Accession Version	XM_021480568.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 447bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-06-14
Organism	Danio rerio(zebrafish)
Product	nuclear nucleic acid-binding protein C1D isoform X1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007124.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGGCTGATG ATGCTGCAGT AGAGGATTAT CCCACTGAAA TCGAAGACAA CCTGAATGAT 
TTCGACTCTT CTTTGAGCTC TGTCCAGAAT ATGGTCCAGA CACTGGTGTC TGTATCCAGA 
AGTGACCGTC TGCTTAAATT GGATCCTCTT GAACAAGCTA AACTGGATCT GATGTCGGCA 
TACGCCCTCA ACTCAATGTT CTGGATGTAT CTTGTGACAC AAGGAGTCAA TCCGAAAGAC 
CATCCAATCA AACAAGAACT GGAAAGAATC AGGACATACA TGAATAAAGT CAAAGAGATC 
ACGGACAGAA GAAAAGCTGC ACATATAGAC AAAGAAGCAG CGTCGCGGTT TGTGAGGAAT 
GCTCTGTGGG ATGCAGATGA CAAGAAAAGA AAGGACAAAA CTGACCACCA ACAAAAAGGA 
AAACACACAA AGTTTACTTG GAGTTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_021336243.1
CDS	47..493
Translation	MADDAAVEDYPTEIEDNLNDFDSSLSSVQNMVQTLVSVSRSDRLLKLDPLEQAKLDLMSAYALNSMFWMYLVTQGVNPKDHPIKQELERIRTYMNKVKEITDRRKAAHIDKEAASRFVRNALWDADDKKRKDKTDHQQKGKHTKFTWS

Target ORF information:

RefSeq Version	XM_021480568.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio C1D nuclear receptor corepressor (c1d), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_021480568.1

ORF Insert Sequence:

ATGGCTGATG ATGCTGCAGT AGAGGATTAT CCCACTGAAA TCGAAGACAA CCTGAATGAT 
TTCGACTCTT CTTTGAGCTC TGTCCAGAAT ATGGTCCAGA CACTGGTGTC TGTATCCAGA 
AGTGACCGTC TGCTTAAATT GGATCCTCTT GAACAAGCTA AACTGGATCT GATGTCGGCA 
TACGCCCTCA ACTCAATGTT CTGGATGTAT CTTGTGACAC AAGGAGTCAA TCCGAAAGAC 
CATCCAATCA AACAAGAACT GGAAAGAATC AGGACATACA TGAATAAAGT CAAAGAGATC 
ACGGACAGAA GAAAAGCTGC ACATATAGAC AAAGAAGCAG CGTCGCGGTT TGTGAGGAAT 
GCTCTGTGGG ATGCAGATGA CAAGAAAAGA AAGGACAAAA CTGACCACCA ACAAAAAGGA 
AAACACACAA AGTTTACTTG GAGTTGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Pharmacokinetics and effects of tetrabromobisphenol a (TBBPA) to early life stages of zebrafish (Danio rerio).
Chemosphere190243-252(2018 Jan)
Liu H,Ma Z,Zhang T,Yu N,Su G,Giesy JP,Yu H

Integrated in silico and in vivo approaches to investigate effects of BDE-99 mediated by the nuclear receptors on developing zebrafish.
Environmental toxicology and chemistry(2017 Oct)
Zhang L,Jin Y,Han Z,Liu H,Shi L,Hua X,Doering JA,Tang S,Giesy JP,Yu H

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

Differential modulation of expression of nuclear receptor mediated genes by tris(2-butoxyethyl) phosphate (TBOEP) on early life stages of zebrafish (Danio rerio).
Aquatic toxicology (Amsterdam, Netherlands)169196-203(2015 Dec)
Ma Z,Yu Y,Tang S,Liu H,Su G,Xie Y,Giesy JP,Hecker M,Yu H

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

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c1d cDNA ORF clone, Danio rerio(zebrafish)

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Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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