Gene Symbol | C20orf27 |
Entrez Gene ID | 54976 |
Full Name | chromosome 20 open reading frame 27 |
General protein information |
|
Gene Type | protein-coding |
Organism | Homo sapiens(human) |
Genome |
ORF » Species Summary » Homo sapiens » C20orf27 cDNA ORF clone
Gene Symbol | C20orf27 |
Entrez Gene ID | 54976 |
Full Name | chromosome 20 open reading frame 27 |
General protein information |
|
Gene Type | protein-coding |
Organism | Homo sapiens(human) |
Genome |
mRNA | Protein | Name |
---|---|---|
NM_001258429.1 | NP_001245358.1 | UPF0687 protein C20orf27 isoform 2 |
XM_011529266.2 | XP_011527568.1 | UPF0687 protein C20orf27 isoform X1 |
NM_001258430.2 | NP_001245359.1 | UPF0687 protein C20orf27 isoform 2 |
NM_001258430.1 | NP_001245359.1 | UPF0687 protein C20orf27 isoform 2 |
NM_001039140.2 | NP_001034229.1 | UPF0687 protein C20orf27 isoform 1 |
NM_001258429.2 | NP_001245358.1 | UPF0687 protein C20orf27 isoform 2 |
XM_011529266.3 | XP_011527568.1 | UPF0687 protein C20orf27 isoform X1 |
NM_001039140.3 | NP_001034229.1 | UPF0687 protein C20orf27 isoform 1 |
Pan troglodytes (chimpanzee) | C20H20orf27 | XP_530265.2 |
Rattus norvegicus (Norway rat) | RGD1311739 | NP_001020862.1 |
C10H20orf27 | XP_001115327.1 | |
Mus musculus (house mouse) | 1700037H04Rik | NP_080367.1 |
Bos taurus (cattle) | C13H20orf27 | NP_001039670.1 |
Gallus gallus (chicken) | LOC100858801 | XP_003643512.2 |
Xenopus tropicalis (tropical clawed frog) | c20orf27 | NP_001007504.1 |
Homo sapiens (human) | C20orf27 | NP_001034229.1 |
Canis lupus familiaris (dog) | C24H20orf27 | XP_005634887.1 |
Danio rerio (zebrafish) | LOC560941 | XP_689433.5 |
Systematic Analysis of Human Protein Phosphatase Interactions and Dynamics.
Yadav L, Tamene F, G??s H, van Drogen A, Katainen R, Aebersold R, Gstaiger M, Varjosalo M
Cell systems4(4)430-444.e5(2017 Apr)
An organelle-specific protein landscape identifies novel diseases and molecular mechanisms.
Boldt K, van Reeuwijk J, Lu Q, Koutroumpas K, Nguyen TM, Texier Y, van Beersum SE, Horn N, Willer JR, Mans DA, Dougherty G, Lamers IJ, Coene KL, Arts HH, Betts MJ, Beyer T, Bolat E, Gloeckner CJ, Haidari K, Hetterschijt L, Iaconis D, Jenkins D, Klose F, Knapp B, Latour B, Letteboer SJ, Marcelis CL, Mitic D, Morleo M, Oud MM, Riemersma M, Rix S, Terhal PA, Toedt G, van Dam TJ, de Vrieze E, Wissinger Y, Wu KM, Apic G, Beales PL, Blacque OE, Gibson TJ, Huynen MA, Katsanis N, Kremer H, Omran H, van Wijk E, Wolfrum U, Kepes F, Davis EE, Franco B, Giles RH, Ueffing M, Russell RB, Roepman R,
Nature communications711491(2016 May)
Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides.
Gevaert K, Goethals M, Martens L, Van Damme J, Staes A, Thomas GR, Vandekerckhove J
Nature biotechnology21(5)566-9(2003 May)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
Observational study of gene-disease association, gene-environment interaction, and pharmacogenomic / toxicogenomic. (HuGE Navigator)
Title: Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study.
Observational study of gene-disease association. (HuGE Navigator)
Title: Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip.
The following C20orf27 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the C20orf27 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
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CloneID | OHu03358 | |
Clone ID Related Accession (Same CDS sequence) | NM_001258429.1 , NM_001258430.2 , NM_001258430.1 , NM_001258429.2 | |
Accession Version | NM_001258429.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 525bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-09-22 | |
Organism | Homo sapiens(human) | |
Product | UPF0687 protein C20orf27 isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BF978883.1, AK024220.1 and DB317576.1. Transcript Variant: This variant (2) uses an alternate splice site in the coding region, but maintains the reading frame, compared to variant 1. Variants 2 and 3 encode the same isoform (2), which is shorter than isoform 1. ##Evidence-Data-START## Transcript exon combination :: AK097645.1, SRR1803612.318830.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1968540, SAMEA2142680 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGCTGCAG CCAACAAGGG CAACAAGCCC AGAGTCCGGA GTATCCGCTT TGCGGCAGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001245358.1 |
CDS | 230..754 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001258429.1 |
1 | ATGGCTGCAG CCAACAAGGG CAACAAGCCC AGAGTCCGGA GTATCCGCTT TGCGGCAGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu03358 | |
Clone ID Related Accession (Same CDS sequence) | NM_001258429.1 , NM_001258430.2 , NM_001258430.1 , NM_001258429.2 | |
Accession Version | NM_001258430.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 525bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-08 | |
Organism | Homo sapiens(human) | |
Product | UPF0687 protein C20orf27 isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BC069204.1, AK024220.1 and DB317576.1. On Jun 2, 2019 this sequence version replaced NM_001258430.1. Transcript Variant: This variant (3) differs in the 5' UTR and uses an alternate splice site in the coding region, but maintains the reading frame, compared to variant 1. Variants 2 and 3 encoded the same isoform (2), which is shorter than isoform 1. ##Evidence-Data-START## Transcript exon combination :: BC069204.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA1965299, SAMEA1966682 [ECO:0000350] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGCTGCAG CCAACAAGGG CAACAAGCCC AGAGTCCGGA GTATCCGCTT TGCGGCAGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001245359.1 |
CDS | 632..1156 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001258430.2 |
1 | ATGGCTGCAG CCAACAAGGG CAACAAGCCC AGAGTCCGGA GTATCCGCTT TGCGGCAGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu03358 | |
Clone ID Related Accession (Same CDS sequence) | NM_001258429.1 , NM_001258430.2 , NM_001258430.1 , NM_001258429.2 | |
Accession Version | NM_001258430.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 525bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-09-22 | |
Organism | Homo sapiens(human) | |
Product | UPF0687 protein C20orf27 isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BF978883.1, BC069204.1, AK024220.1 and DB317576.1. Transcript Variant: This variant (3) differs in the 5' UTR and uses an alternate splice site in the coding region, but maintains the reading frame, compared to variant 1. Variants 2 and 3 encoded the same isoform (2), which is shorter than isoform 1. ##Evidence-Data-START## Transcript exon combination :: BC069204.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA1965299, SAMEA1966682 [ECO:0000350] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGCTGCAG CCAACAAGGG CAACAAGCCC AGAGTCCGGA GTATCCGCTT TGCGGCAGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001245359.1 |
CDS | 684..1208 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001258430.1 |
1 | ATGGCTGCAG CCAACAAGGG CAACAAGCCC AGAGTCCGGA GTATCCGCTT TGCGGCAGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu03358 | |
Clone ID Related Accession (Same CDS sequence) | NM_001258429.1 , NM_001258430.2 , NM_001258430.1 , NM_001258429.2 | |
Accession Version | NM_001258429.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 525bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-03 | |
Organism | Homo sapiens(human) | |
Product | UPF0687 protein C20orf27 isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BF978883.1, AK024220.1 and DB317576.1. On Jun 2, 2019 this sequence version replaced NM_001258429.1. Transcript Variant: This variant (2) uses an alternate splice site in the coding region, but maintains the reading frame, compared to variant 1. Variants 2 and 3 encode the same isoform (2), which is shorter than isoform 1. ##Evidence-Data-START## Transcript exon combination :: SRR7346977.33782.1, BC012196.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1968540, SAMEA2142680 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on manual assertion, conservation, expression ##RefSeq-Attributes-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGCTGCAG CCAACAAGGG CAACAAGCCC AGAGTCCGGA GTATCCGCTT TGCGGCAGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001245358.1 |
CDS | 178..702 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001258429.2 |
1 | ATGGCTGCAG CCAACAAGGG CAACAAGCCC AGAGTCCGGA GTATCCGCTT TGCGGCAGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu56033 | |
Clone ID Related Accession (Same CDS sequence) | NM_001039140.2 , NM_001039140.3 | |
Accession Version | NM_001039140.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 600bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-09-22 | |
Organism | Homo sapiens(human) | |
Product | UPF0687 protein C20orf27 isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BF978883.1, BG474804.1, AK024220.1 and DB317576.1. On May 2, 2012 this sequence version replaced NM_001039140.1. Transcript Variant: This variant (1) encodes the longer isoform (1). ##Evidence-Data-START## Transcript exon combination :: AL525575.3, BX364461.2 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1968540, SAMEA2142680 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGCTGCAG CCAACAAGGG TAAGTGCCTT CCTGGCGTGG TAGGACTTGC ACAAGCTCTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001034229.1 |
CDS | 230..829 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001039140.2 |
1 | ATGGCTGCAG CCAACAAGGG TAAGTGCCTT CCTGGCGTGG TAGGACTTGC ACAAGCTCTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu56033 | |
Clone ID Related Accession (Same CDS sequence) | NM_001039140.2 , NM_001039140.3 | |
Accession Version | NM_001039140.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 600bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Homo sapiens(human) | |
Product | UPF0687 protein C20orf27 isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BF978883.1, BG474804.1, AK024220.1 and DB317576.1. On Jun 2, 2019 this sequence version replaced NM_001039140.2. Transcript Variant: This variant (1) encodes the longer isoform (1). ##Evidence-Data-START## Transcript exon combination :: SRR7346977.64513.1, DRR138528.1074703.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1968540, SAMEA2142680 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGCTGCAG CCAACAAGGG TAAGTGCCTT CCTGGCGTGG TAGGACTTGC ACAAGCTCTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001034229.1 |
CDS | 178..777 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001039140.3 |
1 | ATGGCTGCAG CCAACAAGGG TAAGTGCCTT CCTGGCGTGG TAGGACTTGC ACAAGCTCTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu68846 | |
Clone ID Related Accession (Same CDS sequence) | XM_011529266.2 , XM_011529266.3 | |
Accession Version | XM_011529266.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 477bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-05 | |
Organism | Homo sapiens(human) | |
Product | UPF0687 protein C20orf27 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000020.11) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 6, 2016 this sequence version replaced XM_011529266.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Homo sapiens Annotation Release 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCTGCAG CCAACAAGGG TAAGTGCCTT CCTGGCGTGG TAGGACTTGC ACAAGCTCTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011527568.1 |
CDS | 210..686 |
Translation |
Target ORF information:
Target ORF information:
|
XM_011529266.2 |
1 | ATGGCTGCAG CCAACAAGGG TAAGTGCCTT CCTGGCGTGG TAGGACTTGC ACAAGCTCTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu68846 | |
Clone ID Related Accession (Same CDS sequence) | XM_011529266.2 , XM_011529266.3 | |
Accession Version | XM_011529266.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 477bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-12-05 | |
Organism | Homo sapiens(human) | |
Product | UPF0687 protein C20orf27 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000020.11) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Mar 26, 2018 this sequence version replaced XM_011529266.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Updated annotation Annotation Name :: Homo sapiens Updated Annotation Release 109.20191205 Annotation Version :: 109.20191205 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; propagated RefSeq model Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCTGCAG CCAACAAGGG TAAGTGCCTT CCTGGCGTGG TAGGACTTGC ACAAGCTCTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011527568.1 |
CDS | 169..645 |
Translation |
Target ORF information:
Target ORF information:
|
XM_011529266.3 |
1 | ATGGCTGCAG CCAACAAGGG TAAGTGCCTT CCTGGCGTGG TAGGACTTGC ACAAGCTCTT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Systematic Analysis of Human Protein Phosphatase Interactions and Dynamics. |
An organelle-specific protein landscape identifies novel diseases and molecular mechanisms. |
Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. |