Gene Symbol | Best3 |
Entrez Gene ID | 314847 |
Full Name | bestrophin 3 |
Synonyms | Vmd2l3 |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
ORF » Species Summary » Rattus norvegicus » Best3 cDNA ORF clone
gRNAs
Gene Symbol | Best3 |
Entrez Gene ID | 314847 |
Full Name | bestrophin 3 |
Synonyms | Vmd2l3 |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
mRNA | Protein | Name |
---|---|---|
NM_001191783.1 | NP_001178712.1 | bestrophin-3 |
XM_017594852.1 | XP_017450341.1 | bestrophin-3 isoform X5 |
XM_017594849.1 | XP_017450338.1 | bestrophin-3 isoform X2 |
XM_017594850.1 | XP_017450339.1 | bestrophin-3 isoform X3 |
XM_017594851.1 | XP_017450340.1 | bestrophin-3 isoform X4 |
XM_017594848.1 | XP_017450337.1 | bestrophin-3 isoform X1 |
BEST3 | XP_001117392.1 | |
Pan troglodytes (chimpanzee) | BEST3 | XP_522466.2 |
Mus musculus (house mouse) | Best3 | NP_001007584.1 |
Rattus norvegicus (Norway rat) | Best3 | NP_001178712.1 |
Canis lupus familiaris (dog) | BEST3 | XP_538279.3 |
Gallus gallus (chicken) | BEST3 | NP_001186598.1 |
Xenopus tropicalis (tropical clawed frog) | best3 | NP_001155224.1 |
Bos taurus (cattle) | BEST3 | XP_002687445.1 |
Homo sapiens (human) | BEST3 | NP_116124.2 |
Drosophila melanogaster (fruit fly) | Best3 | NP_730039.1 |
Mitochondria dependent pathway is involved in the protective effect of bestrophin-3 on hydrogen peroxide-induced apoptosis in basilar artery smooth muscle cells.
Jiang L, Liu Y, Ma MM, Tang YB, Zhou JG, Guan YY
Apoptosis : an international journal on programmed cell death18(5)556-65(2013 May)
ERK1/2-dependent bestrophin-3 expression prevents ER-stress-induced cell death in renal epithelial cells by reducing CHOP.
Lee WK, Chakraborty PK, Roussa E, Wolff NA, Th?venod F
Biochimica et biophysica acta1823(10)1864-76(2012 Oct)
Bestrophin is important for the rhythmic but not the tonic contraction in rat mesenteric small arteries.
Broegger T, Jacobsen JC, Secher Dam V, Boedtkjer DM, Kold-Petersen H, Pedersen FS, Aalkjaer C, Matchkov VV
Cardiovascular research91(4)685-93(2011 Sep)
Bestrophin-3 (vitelliform macular dystrophy 2-like 3 protein) is essential for the cGMP-dependent calcium-activated chloride conductance in vascular smooth muscle cells.
Matchkov VV, Larsen P, Bouzinova EV, Rojek A, Boedtkjer DM, Golubinskaya V, Pedersen FS, Aalkjaer C, Nilsson H
Circulation research103(8)864-72(2008 Oct)
A short motif in the C-terminus of mouse bestrophin 3 [corrected] inhibits its activation as a Cl channel.
Qu Z, Cui Y, Hartzell C
FEBS letters580(8)2141-6(2006 Apr)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
Best-3 inhibits apoptosis induced by H2O2 in basilar artery smooth muscle cells through mitochondria dependent pathway.
Title: Mitochondria dependent pathway is involved in the protective effect of bestrophin-3 on hydrogen peroxide-induced apoptosis in basilar artery smooth muscle cells.
ERK1/2-dependent Best-3 activation regulates cell fate decisions during endoplasmic reticulum stress by suppressing CHOP induction and death.
Title: ERK1/2-dependent bestrophin-3 expression prevents ER-stress-induced cell death in renal epithelial cells by reducing CHOP.
Bestrophin-3 expression was significantly reduced compared with arteries transfected with mutated siRNA
Title: Bestrophin is important for the rhythmic but not the tonic contraction in rat mesenteric small arteries.
Bestrophin-3 (vitelliform macular dystrophy 2-like 3 protein) is essential for the cGMP-dependent calcium-activated chloride conductance in vascular smooth muscle cells.
Title: Bestrophin-3 (vitelliform macular dystrophy 2-like 3 protein) is essential for the cGMP-dependent calcium-activated chloride conductance in vascular smooth muscle cells.
The following Best3 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Best3 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ORa47365 | |
Clone ID Related Accession (Same CDS sequence) | XM_017594852.1 | |
Accession Version | XM_017594852.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1812bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | bestrophin-3 isoform X5 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005106.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAAGATTT TTCTTCCCTT GGGAGACTCC ATAGAAATAG GGTTTTACGT TACTCTGGTA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017450341.1 |
CDS | 282..2093 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGAAGATTT TTCTTCCCTT GGGAGACTCC ATAGAAATAG GGTTTTACGT TACTCTGGTA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa07644 | |
Clone ID Related Accession (Same CDS sequence) | NM_001191783.1 , XM_017594849.1 | |
Accession Version | NM_001191783.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2019bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-05-31 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | bestrophin-3 | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AABR07057196.1. On Jul 17, 2010 this sequence version replaced XM_235161.5. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMN04563758, SAMN04563759 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGACTGTCA CTTACTCCAG TAAAGTAGCA AATGCGACTT TTTTTGGATT TCATAGGTTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001178712.1 |
CDS | 1..2019 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGACTGTCA CTTACTCCAG TAAAGTAGCA AATGCGACTT TTTTTGGATT TCATAGGTTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa07644 | |
Clone ID Related Accession (Same CDS sequence) | NM_001191783.1 , XM_017594849.1 | |
Accession Version | XM_017594849.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2019bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | bestrophin-3 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005106.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGACTGTCA CTTACTCCAG TAAAGTAGCA AATGCGACTT TTTTTGGATT TCATAGGTTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017450338.1 |
CDS | 591..2609 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGACTGTCA CTTACTCCAG TAAAGTAGCA AATGCGACTT TTTTTGGATT TCATAGGTTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa47364 | |
Clone ID Related Accession (Same CDS sequence) | XM_017594848.1 | |
Accession Version | XM_017594848.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2307bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | bestrophin-3 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005106.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAGCCAGG CTAAGACCGA AAGCAAACTA AGAACTGAGG CTGTTTATAA CGCTATAACT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017450337.1 |
CDS | 118..2424 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGAGCCAGG CTAAGACCGA AAGCAAACTA AGAACTGAGG CTGTTTATAA CGCTATAACT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa62012 | |
Clone ID Related Accession (Same CDS sequence) | XM_017594850.1 | |
Accession Version | XM_017594850.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1908bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | bestrophin-3 isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005106.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGAAGATTT TTCTTCCCTT GGGAGACTCC ATAGAAATAG GTTGCTCCTC AAGTGGAGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017450339.1 |
CDS | 94..2001 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGAAGATTT TTCTTCCCTT GGGAGACTCC ATAGAAATAG GTTGCTCCTC AAGTGGAGAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa62013 | |
Clone ID Related Accession (Same CDS sequence) | XM_017594851.1 | |
Accession Version | XM_017594851.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1893bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | bestrophin-3 isoform X4 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005106.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCGACTTT TTTTGGATTT CATAGGTTGC TCCTCAAGTG GAGAGGCAGC ATCTACAAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017450340.1 |
CDS | 619..2511 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCGACTTT TTTTGGATTT CATAGGTTGC TCCTCAAGTG GAGAGGCAGC ATCTACAAAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Mitochondria dependent pathway is involved in the protective effect of bestrophin-3 on hydrogen peroxide-induced apoptosis in basilar artery smooth muscle cells. |
ERK1/2-dependent bestrophin-3 expression prevents ER-stress-induced cell death in renal epithelial cells by reducing CHOP. |
Bestrophin is important for the rhythmic but not the tonic contraction in rat mesenteric small arteries. |
Bestrophin-3 (vitelliform macular dystrophy 2-like 3 protein) is essential for the cGMP-dependent calcium-activated chloride conductance in vascular smooth muscle cells. |
A short motif in the C-terminus of mouse bestrophin 3 [corrected] inhibits its activation as a Cl channel. |