Gene Symbol | RT1-DOb |
Entrez Gene ID | 365542 |
Full Name | RT1 class II, locus DOb |
Synonyms | DOb,H2-Ob,RT1-Bb2 |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
ORF » Species Summary » Rattus norvegicus » RT1-DOb cDNA ORF clone
gRNAs
Gene Symbol | RT1-DOb |
Entrez Gene ID | 365542 |
Full Name | RT1 class II, locus DOb |
Synonyms | DOb,H2-Ob,RT1-Bb2 |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_006255970.3 | XP_006256032.1 | RT1 class II, DO beta isoform X1 |
NM_001008846.1 | NP_001008846.1 | RT1 class II, DO beta |
Homo sapiens (human) | HLA-DOB | NP_002111.1 |
Rattus norvegicus (Norway rat) | RT1-DOb | NP_001008846.1 |
Pan troglodytes (chimpanzee) | PATR-DOB | NP_001123943.1 |
MAMU-DOB | XP_001115393.1 | |
Canis lupus familiaris (dog) | DLA-DOB | NP_001041592.1 |
Bos taurus (cattle) | BOLA-DOB | NP_001013618.1 |
Mus musculus (house mouse) | H2-Ob | NP_034519.2 |
Natural polymorphisms in Tap2 influence negative selection and CD4?CD8 lineage commitment in the rat.
Tuncel J, Haag S, Yau AC, Norin U, Baud A, L?nnblom E, Maratou K, Ytterberg AJ, Ekman D, Thordardottir S, Johannesson M, Gillett A, , Stridh P, Jagodic M, Olsson T, Fern?ndez-Teruel A, Zubarev RA, Mott R, Aitman TJ, Flint J, Holmdahl R
PLoS genetics10(2)e1004151(2014 Feb)
Mapping the HLA-DO/HLA-DM complex by FRET and mutagenesis.
Yoon T, Macmillan H, Mortimer SE, Jiang W, Rinderknecht CH, Stern LJ, Mellins ED
Proceedings of the National Academy of Sciences of the United States of America109(28)11276-81(2012 Jul)
The major histocompatibility complex of the rat (Rattus norvegicus).
G?nther E, Walter L
Immunogenetics53(7)520-42(2001 Sep)
Genomic organization and cDNA sequence of the rat RT1-DOb gene.
Koda T, Kishi M, Kakinuma M, Tank WR
Immunogenetics48(1)67-72(1998 Jun)
Altered antigen presentation in mice lacking H2-O.
Liljedahl M, Winqvist O, Surh CD, Wong P, Ngo K, Teyton L, Peterson PA, Brunmark A, Rudensky AY, Fung-Leung WP, Karlsson L
Immunity8(2)233-43(1998 Feb)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following RT1-DOb gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the RT1-DOb cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ORa12309 | |
Clone ID Related Accession (Same CDS sequence) | NM_001008846.1 | |
Accession Version | NM_001008846.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 819bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-09-30 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | RT1 class II, DO beta | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BX883043.1. On Jan 5, 2005 this sequence version replaced XM_345085.1. ##Evidence-Data-START## Transcript exon combination :: CO569265.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2689594, SAMEA2689599 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGGTGCTG GGAGGGCCCC CTGGGTGGTG GCTCTGCTAG TGAACCTCAT GAGGCCAGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001008846.1 |
CDS | 1..819 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGGTGCTG GGAGGGCCCC CTGGGTGGTG GCTCTGCTAG TGAACCTCAT GAGGCCAGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa39162 | |
Clone ID Related Accession (Same CDS sequence) | XM_006255970.3 | |
Accession Version | XM_006255970.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 741bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | RT1 class II, DO beta isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005119.4) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_006255970.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGGTGCTG GGAGGGCCCC CTGGGTGGTG GCTCTGCTAG TGAACCTCAT GAGGCCAGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006256032.1 |
CDS | 113..853 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGGTGCTG GGAGGGCCCC CTGGGTGGTG GCTCTGCTAG TGAACCTCAT GAGGCCAGAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Natural polymorphisms in Tap2 influence negative selection and CD4?CD8 lineage commitment in the rat. |
Mapping the HLA-DO/HLA-DM complex by FRET and mutagenesis. |
The major histocompatibility complex of the rat (Rattus norvegicus). |
Genomic organization and cDNA sequence of the rat RT1-DOb gene. |
Altered antigen presentation in mice lacking H2-O. |