USP42 cDNA ORF clone, Calidris pugnax(ruff)

The following USP42 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the USP42 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
OCa71939 XM_014951428.1
Latest version!
Calidris pugnax ubiquitin specific peptidase 42 (USP42), transcript variant X1, mRNA. pcDNA3.1-C-(k)DYK or customized vector TBD $797.30
$1139.00
OCa71939 XM_014951430.1
Latest version!
Calidris pugnax ubiquitin specific peptidase 42 (USP42), transcript variant X2, mRNA. pcDNA3.1-C-(k)DYK or customized vector TBD $797.30
$1139.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

  • Reference Sequences (Refseq)
    CloneID OCa71939
    Clone ID Related Accession (Same CDS sequence) XM_014951428.1 , XM_014951430.1
    Accession Version XM_014951428.1 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 4179bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 2015-12-08
    Organism Calidris pugnax(ruff)
    Product ubiquitin carboxyl-terminal hydrolase 42
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_015090925.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Calidris pugnax Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    2641
    2701
    2761
    2821
    2881
    2941
    3001
    3061
    3121
    3181
    3241
    3301
    3361
    3421
    3481
    3541
    3601
    3661
    3721
    3781
    3841
    3901
    3961
    4021
    4081
    4141
    ATGACCATAG TTAACAAGCC AAAATCTTCA AAATCTAAAA AGTCATCATC ACGGCGGTCT 
    GACAAATCTA AGAAACCCCG TACTAAAAAA ATGACGTCAC GCACCGCCAA TTTGAGCCGA
    GTACCATCTG CAGAAGATCC AAACAAAGTC TCTGTGGACA AAGGACCTGG AGGTGCTATT
    TACTGTAGAT CATCTCAAAA ACCTAAGCCT TTTGCCCAAA GAGATCTAAT TATTAATGAC
    GGAATTGCCC CGCCACAAAG GATTCTTTTT CCACCTGAGA AAATCTGTAT GGATTGGCAA
    CAAACACAAA GTGTTGGAGT TGGGCTTCAG AATCTCGGCA ACACATGTTT CCTTAATTCT
    ACCCTCCAGT GCTTGACCTA CACGCCTCCT CTCGCCAACT ACATGCTTTC TCTTGAGCAC
    ACCCAGTCAT GTCATGAAGA AGGCTTCTGT ATGATGTGCA CGATGGAAAC GCACATTAAC
    CAGGTCCTGT GTTGCTCTAA CAATGCCATC AAACCTACAT CTGTTATCAA TGGCCTTAAA
    CGAATAGGAA AACATTTCCA TTTTGGCAGT CAAGAGGATG CACATGAATT CTTATGCTTC
    ACTGTTGATG CATTGCAGAA AGCTTGCTTG AATGGAAGCA CCAAATTGGA CAGATCCTCT
    CAAGCCACCA CACTTATTTA TCAAATATTT GGAGGATATC TCAGATCCCG AGTGAAGTGC
    TTGAACTGCA AAGCAGTTTC GGATACGTTC GAGCCATTCC TCGATATTAC TTTGGATATA
    AAGGCAGTTA CATCTGTCAC CAGAGCTCTG GAACAATTTG TGAAACCAGA ACAACTGGAT
    GGTGAAAATA GCTATAAGTG TAGCAAGTGC AAAAAGATGG TTCCTGCTTC AAAGCGGTAC
    ACGATACATC GTTCTTCCAA TGTTCTCACA ATATCACTGA AAAGATTTGC GAATTTTACA
    GGTGGAAAGA TTAACAAGGA TGTAAAATAT CCTGAATATT TGGATCTTCG AGCATACATG
    TCCCAGTCCA TGGGAGAACC CCTCATCTAT GCTTTATATG CAGTTATGGT ACATAGTGGC
    TTCAACTGTA ACGCGGGACA CTATCTCTGC TTCATCAAGG CTGGCAACGG ACTTTGGTAT
    CGAATGAATG ATGCCTCAGT AGAGCTTTCT GATATCAAAA CAGTTCTCAA TCAGCAAGCT
    TATGTACTTT TTTATATCAG GCGCTATGAT TTGACGCTGG GAGAACGTAC TTTTTACTTA
    CCAGCCCCGT CTTACCCTCG CTCCTTCCTC GGCCAGCGAG GGGCCAACAG TAAACAGACC
    GCATTTATGG GACCACGACT GCCTCCTCAC ATGATTAAGA ATTCAAGTCG TTTAAATGGA
    AATGGACCCC TGAAAGAGGA TCCAAATGCT GTTGGTATCA CCCTAAAAAG ACCATCTTCT
    GCTCCGCCAA CGGCTTGTGT TCAAAACTGG GCAATTACCA GGCCTTCAAA TATGGATCCA
    CTGAAAAACC AGAAGATCAC TATCAGTATT CATAACAAAT TGCCTGCACG CCAGACTGTG
    TCACAACCTG ACTGTCTTAC AAGCGCTCTG GAGGATGAGG ACGTGAGCAA GCCTGTTCCT
    TCATCCACAA TTACACATTC TTCTGCAGCA GAGTCTACCT CAAACATATC TATGATGGCA
    GTGGCTACTA ACTTTTCCAG ACAAGAAGTT CCTGATGAAA TTTTCGCTGA GCCAGCAGTG
    AATGGAAACC CTAAGCTCGG CCCTGATAAC GCAGTCCATT ACGTTCCAGA AACTTCAGGA
    AAACCTGAGG ACTCGAAGGG CTTGTTTAAA AGGAATTGCA ATGTTATATC TTCAAATGGA
    ATTCCGATTG GAAAGGTGGT CCGTACCTTG CAGAATTCCC ATTCTTCCTG TCAGACTGCT
    GAAGAAGAAA GAGCCCAGCA TGAGCTGCCA AAAAATGATT TGTTAAATGG TGCTATTAGT
    TTAGATAATG AATCTAAAGA AAATGGACTG AAACTTGACG ATTCCACTTG CCAAGTCCAA
    CCCGTTATAC CTTCTGAGAT TTTCTTTTCT AAAACAAATG GATTGCTTGA AACAATACCT
    ATAGCTTTGT CACCAGTTCC TCAAGAAGTA ATCTTAGAAT CTCTCGCGTA CAGCCAGTTG
    AACAGCTTGT CAGAGGAAAT AAGTGCCCCT GGACCTCAGA AATCTTCTGA GAATGATGCT
    CTTATGGAAA CTGTAGTAAT GGAAGCACTA TTTGCCTATG AGGAATCCAG GAAGGTTCCT
    TCCAACTTTA GCTGTGAGGT TGAGAATCTT TTTGCTCAAT CAGATTCTGA AACCATTTCT
    ACCAAAGAAG TTGTTGCTGA AAGTATTATA ACAAAAGCTG ATAACGCGCA TCCCAATATC
    AACGGTCAGC ACAAGGTGAG GAAAAAATCC TTGGACGCTG AAGATGAGTT CTTTGGGCAG
    CGCGAGTCTG AAGACAATAG AGACAAAGAC AAACCAAGAA GATCAAAAGA ACCTGAACTC
    ATTTCAAAAG AAAATCCTTT GTACATCAAA GGATCTCCTG AGAGAGAAGA GAAATTAGGG
    CAAACTTTCT CTGTGAAGTC TGACATTGAA TGTAGTTCTA AAAAACTTGC ATCTCTAGAT
    ATTACAGATA AATGCCAAGA CACAAAGGAT ATTTCTAATA ACTATGTGGA GGTACCACCT
    GTTAATGACT CTTCTATAAT GAAGCTGGAT AAAGTTTTAG AGAGTCAATT TTCTAGGGAA
    AATGAGGGAC TGAGTAATAA AAAATGTGAA GAAGATAAAC ATAGGAAAAA ATACAAGAAA
    AAAATATATG ACTCTAAAAA AACTGACAAA GAGCACTACC GAAGGAAGAG AGAACACTCG
    GACACCGAGG AGAGGGAGAA GGAGAAGCAA AGCAGGAACA AACCAGATGA TTATCCCCAC
    AAGAGGAGGA GGTGCTCTCG CAGCGTGGAA GCAAATAAGC AGAATCGTCA TAAGCAGGAG
    TATTGCAGCG AAAGCAAGTA CAGATCTTCC CATAATGAAA GAAACACTCC AAATAACGGC
    AAAAGCTCAG GAAAATATTC TCGTTATAGA TCCCGAAGCA GGGAAAGAAC AGAACAAGAC
    AGGAATAGGT ATTATCATTC CAAAGGAGAG AGAACTTGGA GCAGAGAAAG ATACTATCAA
    GATGAACCAC GGAGATGGGA AAAATGCAGA TACTACAATG ATTATTATTC CTCTCATGGA
    ACAAGAGATG GCAGAGAGAG AAGGTCCTCC TACTGCGATA AAGACTTTGA CAAACCGAGC
    CAGGCTTACA GCCGGTCACA CAAGGACTAT CACTGCAGAG GCAGGTGGCC TCACGCCGGC
    CCCTCCAGAG AGGACGAGGG TCACCACTTC AGCAGCCACA GAGGGAACCC GCACCACGGC
    CCAGCACCGC AGCAACCCCA GGGACGCTCC CGGGAGAGGC ACCTCCTCCC GCCCCCGCCA
    GCACCGGCAG GTCTTGAAGG CTCTTCCCGG GAAAACGAAA AAGAGAAACT CAGAAATGGC
    AAAAGAAAAT ACACCCCCAC AGAGGAAAGT GGAAGCGAAG TCGAAAAGAA ATGCCGAAAG
    ATAGATGACC AAAGAATGAA AAAATACAAG AAGGTCAAGA AGAAAAAGAA GTCCAAAGAT
    AAACATCGAG AGAAGGATTA CAAACTTTAT GATTCGGATT TCTCTGTGCT CCGCTTTGAC
    AATGACAATC GCAAACATAA GAAAAAGAAG AAAAAGAAGA AACATATCAG GAAACTGAAA
    GGCTTCTTGG AATATTTAGA TCCTCATTTC CAGAAGAAAA CACGGGAGAA GAAGAAAGAA
    TCCGGTCCCC CAGGCGGCTA TTTATGTGAG CAATACACAA CCCAGGGCAG CAAACAGCCC
    CACAAGGAAG AGAAACCTCC TGGTGCCGGT GAGAGCAAGA GACACAGCTC CAGCGCAGCC
    AGGGAGTCTC TGAAAGATAT AGACCTGCCT TCTGCTAAAC ACACTGAGTT GACAGTTGTT
    ACCCCTCCAG AGGACGCTTC GCAATTTAAC AACCAGAGAA TGCTGACCTC CCTGACAGAC
    ATCTTCACTA CTCAAACTAA ACCTACCGTC ACAACCAACA ACGTCTCATC ATCAAAACCA
    ACACCTTCTT ACCACCAAAC CCGACATTAC CAATATTGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_014806914.1
    CDS2110..6288
    Translation

    Target ORF information:

    RefSeq Version XM_014951428.1
    Organism Calidris pugnax(ruff)
    Definition Calidris pugnax ubiquitin specific peptidase 42 (USP42), transcript variant X1, mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    XM_014951428.1

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    2641
    2701
    2761
    2821
    2881
    2941
    3001
    3061
    3121
    3181
    3241
    3301
    3361
    3421
    3481
    3541
    3601
    3661
    3721
    3781
    3841
    3901
    3961
    4021
    4081
    4141
    ATGACCATAG TTAACAAGCC AAAATCTTCA AAATCTAAAA AGTCATCATC ACGGCGGTCT 
    GACAAATCTA AGAAACCCCG TACTAAAAAA ATGACGTCAC GCACCGCCAA TTTGAGCCGA
    GTACCATCTG CAGAAGATCC AAACAAAGTC TCTGTGGACA AAGGACCTGG AGGTGCTATT
    TACTGTAGAT CATCTCAAAA ACCTAAGCCT TTTGCCCAAA GAGATCTAAT TATTAATGAC
    GGAATTGCCC CGCCACAAAG GATTCTTTTT CCACCTGAGA AAATCTGTAT GGATTGGCAA
    CAAACACAAA GTGTTGGAGT TGGGCTTCAG AATCTCGGCA ACACATGTTT CCTTAATTCT
    ACCCTCCAGT GCTTGACCTA CACGCCTCCT CTCGCCAACT ACATGCTTTC TCTTGAGCAC
    ACCCAGTCAT GTCATGAAGA AGGCTTCTGT ATGATGTGCA CGATGGAAAC GCACATTAAC
    CAGGTCCTGT GTTGCTCTAA CAATGCCATC AAACCTACAT CTGTTATCAA TGGCCTTAAA
    CGAATAGGAA AACATTTCCA TTTTGGCAGT CAAGAGGATG CACATGAATT CTTATGCTTC
    ACTGTTGATG CATTGCAGAA AGCTTGCTTG AATGGAAGCA CCAAATTGGA CAGATCCTCT
    CAAGCCACCA CACTTATTTA TCAAATATTT GGAGGATATC TCAGATCCCG AGTGAAGTGC
    TTGAACTGCA AAGCAGTTTC GGATACGTTC GAGCCATTCC TCGATATTAC TTTGGATATA
    AAGGCAGTTA CATCTGTCAC CAGAGCTCTG GAACAATTTG TGAAACCAGA ACAACTGGAT
    GGTGAAAATA GCTATAAGTG TAGCAAGTGC AAAAAGATGG TTCCTGCTTC AAAGCGGTAC
    ACGATACATC GTTCTTCCAA TGTTCTCACA ATATCACTGA AAAGATTTGC GAATTTTACA
    GGTGGAAAGA TTAACAAGGA TGTAAAATAT CCTGAATATT TGGATCTTCG AGCATACATG
    TCCCAGTCCA TGGGAGAACC CCTCATCTAT GCTTTATATG CAGTTATGGT ACATAGTGGC
    TTCAACTGTA ACGCGGGACA CTATCTCTGC TTCATCAAGG CTGGCAACGG ACTTTGGTAT
    CGAATGAATG ATGCCTCAGT AGAGCTTTCT GATATCAAAA CAGTTCTCAA TCAGCAAGCT
    TATGTACTTT TTTATATCAG GCGCTATGAT TTGACGCTGG GAGAACGTAC TTTTTACTTA
    CCAGCCCCGT CTTACCCTCG CTCCTTCCTC GGCCAGCGAG GGGCCAACAG TAAACAGACC
    GCATTTATGG GACCACGACT GCCTCCTCAC ATGATTAAGA ATTCAAGTCG TTTAAATGGA
    AATGGACCCC TGAAAGAGGA TCCAAATGCT GTTGGTATCA CCCTAAAAAG ACCATCTTCT
    GCTCCGCCAA CGGCTTGTGT TCAAAACTGG GCAATTACCA GGCCTTCAAA TATGGATCCA
    CTGAAAAACC AGAAGATCAC TATCAGTATT CATAACAAAT TGCCTGCACG CCAGACTGTG
    TCACAACCTG ACTGTCTTAC AAGCGCTCTG GAGGATGAGG ACGTGAGCAA GCCTGTTCCT
    TCATCCACAA TTACACATTC TTCTGCAGCA GAGTCTACCT CAAACATATC TATGATGGCA
    GTGGCTACTA ACTTTTCCAG ACAAGAAGTT CCTGATGAAA TTTTCGCTGA GCCAGCAGTG
    AATGGAAACC CTAAGCTCGG CCCTGATAAC GCAGTCCATT ACGTTCCAGA AACTTCAGGA
    AAACCTGAGG ACTCGAAGGG CTTGTTTAAA AGGAATTGCA ATGTTATATC TTCAAATGGA
    ATTCCGATTG GAAAGGTGGT CCGTACCTTG CAGAATTCCC ATTCTTCCTG TCAGACTGCT
    GAAGAAGAAA GAGCCCAGCA TGAGCTGCCA AAAAATGATT TGTTAAATGG TGCTATTAGT
    TTAGATAATG AATCTAAAGA AAATGGACTG AAACTTGACG ATTCCACTTG CCAAGTCCAA
    CCCGTTATAC CTTCTGAGAT TTTCTTTTCT AAAACAAATG GATTGCTTGA AACAATACCT
    ATAGCTTTGT CACCAGTTCC TCAAGAAGTA ATCTTAGAAT CTCTCGCGTA CAGCCAGTTG
    AACAGCTTGT CAGAGGAAAT AAGTGCCCCT GGACCTCAGA AATCTTCTGA GAATGATGCT
    CTTATGGAAA CTGTAGTAAT GGAAGCACTA TTTGCCTATG AGGAATCCAG GAAGGTTCCT
    TCCAACTTTA GCTGTGAGGT TGAGAATCTT TTTGCTCAAT CAGATTCTGA AACCATTTCT
    ACCAAAGAAG TTGTTGCTGA AAGTATTATA ACAAAAGCTG ATAACGCGCA TCCCAATATC
    AACGGTCAGC ACAAGGTGAG GAAAAAATCC TTGGACGCTG AAGATGAGTT CTTTGGGCAG
    CGCGAGTCTG AAGACAATAG AGACAAAGAC AAACCAAGAA GATCAAAAGA ACCTGAACTC
    ATTTCAAAAG AAAATCCTTT GTACATCAAA GGATCTCCTG AGAGAGAAGA GAAATTAGGG
    CAAACTTTCT CTGTGAAGTC TGACATTGAA TGTAGTTCTA AAAAACTTGC ATCTCTAGAT
    ATTACAGATA AATGCCAAGA CACAAAGGAT ATTTCTAATA ACTATGTGGA GGTACCACCT
    GTTAATGACT CTTCTATAAT GAAGCTGGAT AAAGTTTTAG AGAGTCAATT TTCTAGGGAA
    AATGAGGGAC TGAGTAATAA AAAATGTGAA GAAGATAAAC ATAGGAAAAA ATACAAGAAA
    AAAATATATG ACTCTAAAAA AACTGACAAA GAGCACTACC GAAGGAAGAG AGAACACTCG
    GACACCGAGG AGAGGGAGAA GGAGAAGCAA AGCAGGAACA AACCAGATGA TTATCCCCAC
    AAGAGGAGGA GGTGCTCTCG CAGCGTGGAA GCAAATAAGC AGAATCGTCA TAAGCAGGAG
    TATTGCAGCG AAAGCAAGTA CAGATCTTCC CATAATGAAA GAAACACTCC AAATAACGGC
    AAAAGCTCAG GAAAATATTC TCGTTATAGA TCCCGAAGCA GGGAAAGAAC AGAACAAGAC
    AGGAATAGGT ATTATCATTC CAAAGGAGAG AGAACTTGGA GCAGAGAAAG ATACTATCAA
    GATGAACCAC GGAGATGGGA AAAATGCAGA TACTACAATG ATTATTATTC CTCTCATGGA
    ACAAGAGATG GCAGAGAGAG AAGGTCCTCC TACTGCGATA AAGACTTTGA CAAACCGAGC
    CAGGCTTACA GCCGGTCACA CAAGGACTAT CACTGCAGAG GCAGGTGGCC TCACGCCGGC
    CCCTCCAGAG AGGACGAGGG TCACCACTTC AGCAGCCACA GAGGGAACCC GCACCACGGC
    CCAGCACCGC AGCAACCCCA GGGACGCTCC CGGGAGAGGC ACCTCCTCCC GCCCCCGCCA
    GCACCGGCAG GTCTTGAAGG CTCTTCCCGG GAAAACGAAA AAGAGAAACT CAGAAATGGC
    AAAAGAAAAT ACACCCCCAC AGAGGAAAGT GGAAGCGAAG TCGAAAAGAA ATGCCGAAAG
    ATAGATGACC AAAGAATGAA AAAATACAAG AAGGTCAAGA AGAAAAAGAA GTCCAAAGAT
    AAACATCGAG AGAAGGATTA CAAACTTTAT GATTCGGATT TCTCTGTGCT CCGCTTTGAC
    AATGACAATC GCAAACATAA GAAAAAGAAG AAAAAGAAGA AACATATCAG GAAACTGAAA
    GGCTTCTTGG AATATTTAGA TCCTCATTTC CAGAAGAAAA CACGGGAGAA GAAGAAAGAA
    TCCGGTCCCC CAGGCGGCTA TTTATGTGAG CAATACACAA CCCAGGGCAG CAAACAGCCC
    CACAAGGAAG AGAAACCTCC TGGTGCCGGT GAGAGCAAGA GACACAGCTC CAGCGCAGCC
    AGGGAGTCTC TGAAAGATAT AGACCTGCCT TCTGCTAAAC ACACTGAGTT GACAGTTGTT
    ACCCCTCCAG AGGACGCTTC GCAATTTAAC AACCAGAGAA TGCTGACCTC CCTGACAGAC
    ATCTTCACTA CTCAAACTAA ACCTACCGTC ACAACCAACA ACGTCTCATC ATCAAAACCA
    ACACCTTCTT ACCACCAAAC CCGACATTAC CAATATTGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    CloneID OCa71939
    Clone ID Related Accession (Same CDS sequence) XM_014951428.1 , XM_014951430.1
    Accession Version XM_014951430.1 Latest version! Documents for ORF clone product in default vector
    Sequence Information ORF Nucleotide Sequence (Length: 4179bp)
    Protein sequence
    SNP
    Vector pcDNA3.1-C-(k)DYK or customized vector User Manual
    Clone information Clone Map MSDS
    Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
    ORF Insert Method CloneEZ™ Seamless cloning technology
    Insert Structure linear
    Update Date 2015-12-08
    Organism Calidris pugnax(ruff)
    Product ubiquitin carboxyl-terminal hydrolase 42
    Comment Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_015090925.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Calidris pugnax Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    2641
    2701
    2761
    2821
    2881
    2941
    3001
    3061
    3121
    3181
    3241
    3301
    3361
    3421
    3481
    3541
    3601
    3661
    3721
    3781
    3841
    3901
    3961
    4021
    4081
    4141
    ATGACCATAG TTAACAAGCC AAAATCTTCA AAATCTAAAA AGTCATCATC ACGGCGGTCT 
    GACAAATCTA AGAAACCCCG TACTAAAAAA ATGACGTCAC GCACCGCCAA TTTGAGCCGA
    GTACCATCTG CAGAAGATCC AAACAAAGTC TCTGTGGACA AAGGACCTGG AGGTGCTATT
    TACTGTAGAT CATCTCAAAA ACCTAAGCCT TTTGCCCAAA GAGATCTAAT TATTAATGAC
    GGAATTGCCC CGCCACAAAG GATTCTTTTT CCACCTGAGA AAATCTGTAT GGATTGGCAA
    CAAACACAAA GTGTTGGAGT TGGGCTTCAG AATCTCGGCA ACACATGTTT CCTTAATTCT
    ACCCTCCAGT GCTTGACCTA CACGCCTCCT CTCGCCAACT ACATGCTTTC TCTTGAGCAC
    ACCCAGTCAT GTCATGAAGA AGGCTTCTGT ATGATGTGCA CGATGGAAAC GCACATTAAC
    CAGGTCCTGT GTTGCTCTAA CAATGCCATC AAACCTACAT CTGTTATCAA TGGCCTTAAA
    CGAATAGGAA AACATTTCCA TTTTGGCAGT CAAGAGGATG CACATGAATT CTTATGCTTC
    ACTGTTGATG CATTGCAGAA AGCTTGCTTG AATGGAAGCA CCAAATTGGA CAGATCCTCT
    CAAGCCACCA CACTTATTTA TCAAATATTT GGAGGATATC TCAGATCCCG AGTGAAGTGC
    TTGAACTGCA AAGCAGTTTC GGATACGTTC GAGCCATTCC TCGATATTAC TTTGGATATA
    AAGGCAGTTA CATCTGTCAC CAGAGCTCTG GAACAATTTG TGAAACCAGA ACAACTGGAT
    GGTGAAAATA GCTATAAGTG TAGCAAGTGC AAAAAGATGG TTCCTGCTTC AAAGCGGTAC
    ACGATACATC GTTCTTCCAA TGTTCTCACA ATATCACTGA AAAGATTTGC GAATTTTACA
    GGTGGAAAGA TTAACAAGGA TGTAAAATAT CCTGAATATT TGGATCTTCG AGCATACATG
    TCCCAGTCCA TGGGAGAACC CCTCATCTAT GCTTTATATG CAGTTATGGT ACATAGTGGC
    TTCAACTGTA ACGCGGGACA CTATCTCTGC TTCATCAAGG CTGGCAACGG ACTTTGGTAT
    CGAATGAATG ATGCCTCAGT AGAGCTTTCT GATATCAAAA CAGTTCTCAA TCAGCAAGCT
    TATGTACTTT TTTATATCAG GCGCTATGAT TTGACGCTGG GAGAACGTAC TTTTTACTTA
    CCAGCCCCGT CTTACCCTCG CTCCTTCCTC GGCCAGCGAG GGGCCAACAG TAAACAGACC
    GCATTTATGG GACCACGACT GCCTCCTCAC ATGATTAAGA ATTCAAGTCG TTTAAATGGA
    AATGGACCCC TGAAAGAGGA TCCAAATGCT GTTGGTATCA CCCTAAAAAG ACCATCTTCT
    GCTCCGCCAA CGGCTTGTGT TCAAAACTGG GCAATTACCA GGCCTTCAAA TATGGATCCA
    CTGAAAAACC AGAAGATCAC TATCAGTATT CATAACAAAT TGCCTGCACG CCAGACTGTG
    TCACAACCTG ACTGTCTTAC AAGCGCTCTG GAGGATGAGG ACGTGAGCAA GCCTGTTCCT
    TCATCCACAA TTACACATTC TTCTGCAGCA GAGTCTACCT CAAACATATC TATGATGGCA
    GTGGCTACTA ACTTTTCCAG ACAAGAAGTT CCTGATGAAA TTTTCGCTGA GCCAGCAGTG
    AATGGAAACC CTAAGCTCGG CCCTGATAAC GCAGTCCATT ACGTTCCAGA AACTTCAGGA
    AAACCTGAGG ACTCGAAGGG CTTGTTTAAA AGGAATTGCA ATGTTATATC TTCAAATGGA
    ATTCCGATTG GAAAGGTGGT CCGTACCTTG CAGAATTCCC ATTCTTCCTG TCAGACTGCT
    GAAGAAGAAA GAGCCCAGCA TGAGCTGCCA AAAAATGATT TGTTAAATGG TGCTATTAGT
    TTAGATAATG AATCTAAAGA AAATGGACTG AAACTTGACG ATTCCACTTG CCAAGTCCAA
    CCCGTTATAC CTTCTGAGAT TTTCTTTTCT AAAACAAATG GATTGCTTGA AACAATACCT
    ATAGCTTTGT CACCAGTTCC TCAAGAAGTA ATCTTAGAAT CTCTCGCGTA CAGCCAGTTG
    AACAGCTTGT CAGAGGAAAT AAGTGCCCCT GGACCTCAGA AATCTTCTGA GAATGATGCT
    CTTATGGAAA CTGTAGTAAT GGAAGCACTA TTTGCCTATG AGGAATCCAG GAAGGTTCCT
    TCCAACTTTA GCTGTGAGGT TGAGAATCTT TTTGCTCAAT CAGATTCTGA AACCATTTCT
    ACCAAAGAAG TTGTTGCTGA AAGTATTATA ACAAAAGCTG ATAACGCGCA TCCCAATATC
    AACGGTCAGC ACAAGGTGAG GAAAAAATCC TTGGACGCTG AAGATGAGTT CTTTGGGCAG
    CGCGAGTCTG AAGACAATAG AGACAAAGAC AAACCAAGAA GATCAAAAGA ACCTGAACTC
    ATTTCAAAAG AAAATCCTTT GTACATCAAA GGATCTCCTG AGAGAGAAGA GAAATTAGGG
    CAAACTTTCT CTGTGAAGTC TGACATTGAA TGTAGTTCTA AAAAACTTGC ATCTCTAGAT
    ATTACAGATA AATGCCAAGA CACAAAGGAT ATTTCTAATA ACTATGTGGA GGTACCACCT
    GTTAATGACT CTTCTATAAT GAAGCTGGAT AAAGTTTTAG AGAGTCAATT TTCTAGGGAA
    AATGAGGGAC TGAGTAATAA AAAATGTGAA GAAGATAAAC ATAGGAAAAA ATACAAGAAA
    AAAATATATG ACTCTAAAAA AACTGACAAA GAGCACTACC GAAGGAAGAG AGAACACTCG
    GACACCGAGG AGAGGGAGAA GGAGAAGCAA AGCAGGAACA AACCAGATGA TTATCCCCAC
    AAGAGGAGGA GGTGCTCTCG CAGCGTGGAA GCAAATAAGC AGAATCGTCA TAAGCAGGAG
    TATTGCAGCG AAAGCAAGTA CAGATCTTCC CATAATGAAA GAAACACTCC AAATAACGGC
    AAAAGCTCAG GAAAATATTC TCGTTATAGA TCCCGAAGCA GGGAAAGAAC AGAACAAGAC
    AGGAATAGGT ATTATCATTC CAAAGGAGAG AGAACTTGGA GCAGAGAAAG ATACTATCAA
    GATGAACCAC GGAGATGGGA AAAATGCAGA TACTACAATG ATTATTATTC CTCTCATGGA
    ACAAGAGATG GCAGAGAGAG AAGGTCCTCC TACTGCGATA AAGACTTTGA CAAACCGAGC
    CAGGCTTACA GCCGGTCACA CAAGGACTAT CACTGCAGAG GCAGGTGGCC TCACGCCGGC
    CCCTCCAGAG AGGACGAGGG TCACCACTTC AGCAGCCACA GAGGGAACCC GCACCACGGC
    CCAGCACCGC AGCAACCCCA GGGACGCTCC CGGGAGAGGC ACCTCCTCCC GCCCCCGCCA
    GCACCGGCAG GTCTTGAAGG CTCTTCCCGG GAAAACGAAA AAGAGAAACT CAGAAATGGC
    AAAAGAAAAT ACACCCCCAC AGAGGAAAGT GGAAGCGAAG TCGAAAAGAA ATGCCGAAAG
    ATAGATGACC AAAGAATGAA AAAATACAAG AAGGTCAAGA AGAAAAAGAA GTCCAAAGAT
    AAACATCGAG AGAAGGATTA CAAACTTTAT GATTCGGATT TCTCTGTGCT CCGCTTTGAC
    AATGACAATC GCAAACATAA GAAAAAGAAG AAAAAGAAGA AACATATCAG GAAACTGAAA
    GGCTTCTTGG AATATTTAGA TCCTCATTTC CAGAAGAAAA CACGGGAGAA GAAGAAAGAA
    TCCGGTCCCC CAGGCGGCTA TTTATGTGAG CAATACACAA CCCAGGGCAG CAAACAGCCC
    CACAAGGAAG AGAAACCTCC TGGTGCCGGT GAGAGCAAGA GACACAGCTC CAGCGCAGCC
    AGGGAGTCTC TGAAAGATAT AGACCTGCCT TCTGCTAAAC ACACTGAGTT GACAGTTGTT
    ACCCCTCCAG AGGACGCTTC GCAATTTAAC AACCAGAGAA TGCTGACCTC CCTGACAGAC
    ATCTTCACTA CTCAAACTAA ACCTACCGTC ACAACCAACA ACGTCTCATC ATCAAAACCA
    ACACCTTCTT ACCACCAAAC CCGACATTAC CAATATTGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

    RefSeq XP_014806916.1
    CDS568..4746
    Translation

    Target ORF information:

    RefSeq Version XM_014951430.1
    Organism Calidris pugnax(ruff)
    Definition Calidris pugnax ubiquitin specific peptidase 42 (USP42), transcript variant X2, mRNA.

    Target ORF information:

    Epitope DYKDDDDK
    Bacterial selection AMPR
    Mammalian selection NeoR
    Vector pcDNA3.1+/C-(K)DYK
    XM_014951430.1

    ORF Insert Sequence:

    1
    61
    121
    181
    241
    301
    361
    421
    481
    541
    601
    661
    721
    781
    841
    901
    961
    1021
    1081
    1141
    1201
    1261
    1321
    1381
    1441
    1501
    1561
    1621
    1681
    1741
    1801
    1861
    1921
    1981
    2041
    2101
    2161
    2221
    2281
    2341
    2401
    2461
    2521
    2581
    2641
    2701
    2761
    2821
    2881
    2941
    3001
    3061
    3121
    3181
    3241
    3301
    3361
    3421
    3481
    3541
    3601
    3661
    3721
    3781
    3841
    3901
    3961
    4021
    4081
    4141
    ATGACCATAG TTAACAAGCC AAAATCTTCA AAATCTAAAA AGTCATCATC ACGGCGGTCT 
    GACAAATCTA AGAAACCCCG TACTAAAAAA ATGACGTCAC GCACCGCCAA TTTGAGCCGA
    GTACCATCTG CAGAAGATCC AAACAAAGTC TCTGTGGACA AAGGACCTGG AGGTGCTATT
    TACTGTAGAT CATCTCAAAA ACCTAAGCCT TTTGCCCAAA GAGATCTAAT TATTAATGAC
    GGAATTGCCC CGCCACAAAG GATTCTTTTT CCACCTGAGA AAATCTGTAT GGATTGGCAA
    CAAACACAAA GTGTTGGAGT TGGGCTTCAG AATCTCGGCA ACACATGTTT CCTTAATTCT
    ACCCTCCAGT GCTTGACCTA CACGCCTCCT CTCGCCAACT ACATGCTTTC TCTTGAGCAC
    ACCCAGTCAT GTCATGAAGA AGGCTTCTGT ATGATGTGCA CGATGGAAAC GCACATTAAC
    CAGGTCCTGT GTTGCTCTAA CAATGCCATC AAACCTACAT CTGTTATCAA TGGCCTTAAA
    CGAATAGGAA AACATTTCCA TTTTGGCAGT CAAGAGGATG CACATGAATT CTTATGCTTC
    ACTGTTGATG CATTGCAGAA AGCTTGCTTG AATGGAAGCA CCAAATTGGA CAGATCCTCT
    CAAGCCACCA CACTTATTTA TCAAATATTT GGAGGATATC TCAGATCCCG AGTGAAGTGC
    TTGAACTGCA AAGCAGTTTC GGATACGTTC GAGCCATTCC TCGATATTAC TTTGGATATA
    AAGGCAGTTA CATCTGTCAC CAGAGCTCTG GAACAATTTG TGAAACCAGA ACAACTGGAT
    GGTGAAAATA GCTATAAGTG TAGCAAGTGC AAAAAGATGG TTCCTGCTTC AAAGCGGTAC
    ACGATACATC GTTCTTCCAA TGTTCTCACA ATATCACTGA AAAGATTTGC GAATTTTACA
    GGTGGAAAGA TTAACAAGGA TGTAAAATAT CCTGAATATT TGGATCTTCG AGCATACATG
    TCCCAGTCCA TGGGAGAACC CCTCATCTAT GCTTTATATG CAGTTATGGT ACATAGTGGC
    TTCAACTGTA ACGCGGGACA CTATCTCTGC TTCATCAAGG CTGGCAACGG ACTTTGGTAT
    CGAATGAATG ATGCCTCAGT AGAGCTTTCT GATATCAAAA CAGTTCTCAA TCAGCAAGCT
    TATGTACTTT TTTATATCAG GCGCTATGAT TTGACGCTGG GAGAACGTAC TTTTTACTTA
    CCAGCCCCGT CTTACCCTCG CTCCTTCCTC GGCCAGCGAG GGGCCAACAG TAAACAGACC
    GCATTTATGG GACCACGACT GCCTCCTCAC ATGATTAAGA ATTCAAGTCG TTTAAATGGA
    AATGGACCCC TGAAAGAGGA TCCAAATGCT GTTGGTATCA CCCTAAAAAG ACCATCTTCT
    GCTCCGCCAA CGGCTTGTGT TCAAAACTGG GCAATTACCA GGCCTTCAAA TATGGATCCA
    CTGAAAAACC AGAAGATCAC TATCAGTATT CATAACAAAT TGCCTGCACG CCAGACTGTG
    TCACAACCTG ACTGTCTTAC AAGCGCTCTG GAGGATGAGG ACGTGAGCAA GCCTGTTCCT
    TCATCCACAA TTACACATTC TTCTGCAGCA GAGTCTACCT CAAACATATC TATGATGGCA
    GTGGCTACTA ACTTTTCCAG ACAAGAAGTT CCTGATGAAA TTTTCGCTGA GCCAGCAGTG
    AATGGAAACC CTAAGCTCGG CCCTGATAAC GCAGTCCATT ACGTTCCAGA AACTTCAGGA
    AAACCTGAGG ACTCGAAGGG CTTGTTTAAA AGGAATTGCA ATGTTATATC TTCAAATGGA
    ATTCCGATTG GAAAGGTGGT CCGTACCTTG CAGAATTCCC ATTCTTCCTG TCAGACTGCT
    GAAGAAGAAA GAGCCCAGCA TGAGCTGCCA AAAAATGATT TGTTAAATGG TGCTATTAGT
    TTAGATAATG AATCTAAAGA AAATGGACTG AAACTTGACG ATTCCACTTG CCAAGTCCAA
    CCCGTTATAC CTTCTGAGAT TTTCTTTTCT AAAACAAATG GATTGCTTGA AACAATACCT
    ATAGCTTTGT CACCAGTTCC TCAAGAAGTA ATCTTAGAAT CTCTCGCGTA CAGCCAGTTG
    AACAGCTTGT CAGAGGAAAT AAGTGCCCCT GGACCTCAGA AATCTTCTGA GAATGATGCT
    CTTATGGAAA CTGTAGTAAT GGAAGCACTA TTTGCCTATG AGGAATCCAG GAAGGTTCCT
    TCCAACTTTA GCTGTGAGGT TGAGAATCTT TTTGCTCAAT CAGATTCTGA AACCATTTCT
    ACCAAAGAAG TTGTTGCTGA AAGTATTATA ACAAAAGCTG ATAACGCGCA TCCCAATATC
    AACGGTCAGC ACAAGGTGAG GAAAAAATCC TTGGACGCTG AAGATGAGTT CTTTGGGCAG
    CGCGAGTCTG AAGACAATAG AGACAAAGAC AAACCAAGAA GATCAAAAGA ACCTGAACTC
    ATTTCAAAAG AAAATCCTTT GTACATCAAA GGATCTCCTG AGAGAGAAGA GAAATTAGGG
    CAAACTTTCT CTGTGAAGTC TGACATTGAA TGTAGTTCTA AAAAACTTGC ATCTCTAGAT
    ATTACAGATA AATGCCAAGA CACAAAGGAT ATTTCTAATA ACTATGTGGA GGTACCACCT
    GTTAATGACT CTTCTATAAT GAAGCTGGAT AAAGTTTTAG AGAGTCAATT TTCTAGGGAA
    AATGAGGGAC TGAGTAATAA AAAATGTGAA GAAGATAAAC ATAGGAAAAA ATACAAGAAA
    AAAATATATG ACTCTAAAAA AACTGACAAA GAGCACTACC GAAGGAAGAG AGAACACTCG
    GACACCGAGG AGAGGGAGAA GGAGAAGCAA AGCAGGAACA AACCAGATGA TTATCCCCAC
    AAGAGGAGGA GGTGCTCTCG CAGCGTGGAA GCAAATAAGC AGAATCGTCA TAAGCAGGAG
    TATTGCAGCG AAAGCAAGTA CAGATCTTCC CATAATGAAA GAAACACTCC AAATAACGGC
    AAAAGCTCAG GAAAATATTC TCGTTATAGA TCCCGAAGCA GGGAAAGAAC AGAACAAGAC
    AGGAATAGGT ATTATCATTC CAAAGGAGAG AGAACTTGGA GCAGAGAAAG ATACTATCAA
    GATGAACCAC GGAGATGGGA AAAATGCAGA TACTACAATG ATTATTATTC CTCTCATGGA
    ACAAGAGATG GCAGAGAGAG AAGGTCCTCC TACTGCGATA AAGACTTTGA CAAACCGAGC
    CAGGCTTACA GCCGGTCACA CAAGGACTAT CACTGCAGAG GCAGGTGGCC TCACGCCGGC
    CCCTCCAGAG AGGACGAGGG TCACCACTTC AGCAGCCACA GAGGGAACCC GCACCACGGC
    CCAGCACCGC AGCAACCCCA GGGACGCTCC CGGGAGAGGC ACCTCCTCCC GCCCCCGCCA
    GCACCGGCAG GTCTTGAAGG CTCTTCCCGG GAAAACGAAA AAGAGAAACT CAGAAATGGC
    AAAAGAAAAT ACACCCCCAC AGAGGAAAGT GGAAGCGAAG TCGAAAAGAA ATGCCGAAAG
    ATAGATGACC AAAGAATGAA AAAATACAAG AAGGTCAAGA AGAAAAAGAA GTCCAAAGAT
    AAACATCGAG AGAAGGATTA CAAACTTTAT GATTCGGATT TCTCTGTGCT CCGCTTTGAC
    AATGACAATC GCAAACATAA GAAAAAGAAG AAAAAGAAGA AACATATCAG GAAACTGAAA
    GGCTTCTTGG AATATTTAGA TCCTCATTTC CAGAAGAAAA CACGGGAGAA GAAGAAAGAA
    TCCGGTCCCC CAGGCGGCTA TTTATGTGAG CAATACACAA CCCAGGGCAG CAAACAGCCC
    CACAAGGAAG AGAAACCTCC TGGTGCCGGT GAGAGCAAGA GACACAGCTC CAGCGCAGCC
    AGGGAGTCTC TGAAAGATAT AGACCTGCCT TCTGCTAAAC ACACTGAGTT GACAGTTGTT
    ACCCCTCCAG AGGACGCTTC GCAATTTAAC AACCAGAGAA TGCTGACCTC CCTGACAGAC
    ATCTTCACTA CTCAAACTAA ACCTACCGTC ACAACCAACA ACGTCTCATC ATCAAAACCA
    ACACCTTCTT ACCACCAAAC CCGACATTAC CAATATTGA

    The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.