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rtca cDNA ORF clone, Danio rerio(zebrafish)

Summary

Gene Symbol rtca
Entrez Gene ID 321129
Full Name RNA 3'-terminal phosphate cyclase
Synonyms cb158,rtcd1,sb:cb158,wu:fc62c03,zgc:56339
General protein information
Preferred Names

RNA 3'-terminal phosphate cyclase

Names

RNA 3'-terminal phosphate cyclase
RNA terminal phosphate cyclase domain 1
RTC domain containing 1
Gene Type protein-coding
Organism Danio rerio(zebrafish)

Reference Sequences (RefSeq)

mRNA and Protein(s)

mRNA Protein Name
XM_017353105.1 XP_017208594.1 RNA 3'-terminal phosphate cyclase isoform X1
NM_199536.2 NP_955830.1 RNA 3'-terminal phosphate cyclase

Pathways from BioSystems


Homologies


Danio rerio (zebrafish) rtca NP_955830.1
Drosophila melanogaster (fruit fly) CG4061 NP_569977.1
RTCD1 XP_001107617.1
Canis lupus familiaris (dog) RTCA XP_537054.2
Rattus norvegicus (Norway rat) Rtcd1 NP_001004227.1
Xenopus tropicalis (tropical clawed frog) rtca NP_001120256.2
Homo sapiens (human) RTCA NP_001124313.1
Pan troglodytes (chimpanzee) RTCD1 XP_001161113.1
Mus musculus (house mouse) Rtca NP_079793.2
Gallus gallus (chicken) RTCA XP_422311.1
Anopheles gambiae (African malaria mosquito) AgaP_AGAP004820 XP_317988.3
Bos taurus (cattle) RTCA NP_001039520.1

Gene Ontology


Bibliography

Related articles in PubMed

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

The zebrafish gene map defines ancestral vertebrate chromosomes.
Woods IG, Wilson C, Friedlander B, Chang P, Reyes DK, Nix R, Kelly PD, Chu F, Postlethwait JH, Talbot WS
Genome research15(9)1307-14(2005 Sep)

Hematopoietic gene expression profile in zebrafish kidney marrow.
Song HD, Sun XJ, Deng M, Zhang GW, Zhou Y, Wu XY, Sheng Y, Chen Y, Ruan Z, Jiang CL, Fan HY, Zon LI, Kanki JP, Liu TX, Look AT, Chen Z
Proceedings of the National Academy of Sciences of the United States of America101(46)16240-5(2004 Nov)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following rtca gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the rtca cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
ODa31580 NM_199536.2
Latest version!		 Danio rerio RNA 3'-terminal phosphate cyclase (rtca), mRNA. pcDNA3.1+/C-(K)DYK or customized vector 7-9 $258.30
$369.00
ODa57019 XM_017353105.1
Latest version!		 Danio rerio RNA 3'-terminal phosphate cyclase (rtca), transcript variant X1, mRNA. pcDNA3.1+/C-(K)DYK or customized vector 9-11 $174.30
$249.00

ORF Online Only Promotion

Next-day Shipping ORF Clones ( in default vector with tag)
1 Clone 30% OFF
2-4 Clone 40% OFF
5 or more Clone 50% OFF
All Other ORF Clones
30% OFF

*Business Day

** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)


CloneID ODa31580
Clone ID Related Accession (Same CDS sequence) NM_199536.2
Accession Version NM_199536.2 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 1092bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2018-11-23
Organism Danio rerio(zebrafish)
Product RNA 3'-terminal phosphate cyclase
Comment Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from AY398409.1. On Jan 25, 2004 this sequence version replaced NM_199536.1. ##Evidence-Data-START## Transcript exon combination :: AY398409.1, BC046087.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2168446, SAMEA2168447 [ECO:0000350] ##Evidence-Data-END## 

1
61
121
181
241
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361
421
481
541
601
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721
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841
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961
1021
1081
ATGGCCGCAA CTACGTTTGA GATGGACGGA AGTGTAATGG AAGGGGGAGG ACAGATTTTA 
AGGGTGTCTG CGGCGCTGAG TTGCATCCAA GGGGCGTCAA TCAAAATAAA TAAAATCCGA 
GCCGGTAGAA GCACACCGGG TCTGAGGCCT CAGCATCTGT CAGGTCTGGA GCTGCTGAGG 
GACATGTGCA ACGGCAATCT GGAGGGAGCC ACAGTGGGAT CCTCCGAAAT TACGCTCACT 
CCGGGGAAAA TCAAGGGCGG GAATCACATC GCTGACACCC ACACGGCTGG AAGTGTGACT 
CTGCTGATGC AGGTTTCGCT GCCGTGTGCC CTGTTCGCTC AGGGGCCATC AGAGCTGTGC 
CTGAAGGGAG GAACTAACGC TGAAATGGCA CCTCAAATCG ACTACACAGT GAAGGTCTTT 
AAACCAATCG TGGAGCGATT CGGAGTTCAG TTTGACTGCG ATTTAAGAAT GAGAGGTTAT 
TATCCGAAGG GAGGTGGTGA GGTGGTGCTC AAGGTGAACC CGGCAAAGGA ACTGAGTCCT 
ATTAATATGA CAGAAAGAGG GAACATCACT AAGATCTACG GCAGGGCCTT TGTGGCTGGA 
GTACTGCCAT TCAAGCTGGC GAAGGACATG TCGACGGCAG CCATTCGCAC TATCAGGAAA 
GAAATTAAGG ATTTGTACAT CAACATTCAG TCTCTGCAAG AGAAGGACAA GGCCTGCGGC 
AATGGCAATG GGATCATAAT AATTGCAGAA TCATCCACCG GCTGCATATT TGCAGGCTCA 
TCTCTTGGCA AAAAAGGTGT CTATGCTGAT AAAGTTGGCA TCGAGGCAGC AGAAATGTTG 
CTTAGGAACA TCAGACATAA TGGTTGTGTG GACGAGTTCC TGCAAGACCA GCTTATTATT 
TTCATGGCCT TGGCAAACGG TACATCCAGA ATGCGAACAG GACCAATCAC TCTCCACACG 
CAAACGGCAA TCCACGTCGC CGAACAACTG ACGAATGCAA AGTTTGCTAT TAGCAAAGCG 
GAGGACGAAA ACGCCAACGA CACCTACATT ATCGAGTGCC AGGGAGTGGG CGCCACCAAT 
CCTAGCTTGT AA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq NP_955830.1
CDS319..1410
Translation

Target ORF information:

RefSeq Version NM_199536.2
Organism Danio rerio(zebrafish)
Definition Danio rerio RNA 3'-terminal phosphate cyclase (rtca), mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 NM_199536.2

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
961
1021
1081
ATGGCCGCAA CTACGTTTGA GATGGACGGA AGTGTAATGG AAGGGGGAGG ACAGATTTTA 
AGGGTGTCTG CGGCGCTGAG TTGCATCCAA GGGGCGTCAA TCAAAATAAA TAAAATCCGA 
GCCGGTAGAA GCACACCGGG TCTGAGGCCT CAGCATCTGT CAGGTCTGGA GCTGCTGAGG 
GACATGTGCA ACGGCAATCT GGAGGGAGCC ACAGTGGGAT CCTCCGAAAT TACGCTCACT 
CCGGGGAAAA TCAAGGGCGG GAATCACATC GCTGACACCC ACACGGCTGG AAGTGTGACT 
CTGCTGATGC AGGTTTCGCT GCCGTGTGCC CTGTTCGCTC AGGGGCCATC AGAGCTGTGC 
CTGAAGGGAG GAACTAACGC TGAAATGGCA CCTCAAATCG ACTACACAGT GAAGGTCTTT 
AAACCAATCG TGGAGCGATT CGGAGTTCAG TTTGACTGCG ATTTAAGAAT GAGAGGTTAT 
TATCCGAAGG GAGGTGGTGA GGTGGTGCTC AAGGTGAACC CGGCAAAGGA ACTGAGTCCT 
ATTAATATGA CAGAAAGAGG GAACATCACT AAGATCTACG GCAGGGCCTT TGTGGCTGGA 
GTACTGCCAT TCAAGCTGGC GAAGGACATG TCGACGGCAG CCATTCGCAC TATCAGGAAA 
GAAATTAAGG ATTTGTACAT CAACATTCAG TCTCTGCAAG AGAAGGACAA GGCCTGCGGC 
AATGGCAATG GGATCATAAT AATTGCAGAA TCATCCACCG GCTGCATATT TGCAGGCTCA 
TCTCTTGGCA AAAAAGGTGT CTATGCTGAT AAAGTTGGCA TCGAGGCAGC AGAAATGTTG 
CTTAGGAACA TCAGACATAA TGGTTGTGTG GACGAGTTCC TGCAAGACCA GCTTATTATT 
TTCATGGCCT TGGCAAACGG TACATCCAGA ATGCGAACAG GACCAATCAC TCTCCACACG 
CAAACGGCAA TCCACGTCGC CGAACAACTG ACGAATGCAA AGTTTGCTAT TAGCAAAGCG 
GAGGACGAAA ACGCCAACGA CACCTACATT ATCGAGTGCC AGGGAGTGGG CGCCACCAAT 
CCTAGCTTGT AA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID ODa57019
Clone ID Related Accession (Same CDS sequence) XM_017353105.1
Accession Version XM_017353105.1 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 810bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2016-06-23
Organism Danio rerio(Zebrafish)
Product RNA 3'-terminal phosphate cyclase isoform X1
Comment MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007133.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

1
61
121
181
241
301
361
421
481
541
601
661
721
781
ATGGCCGCAA CTACGTTCGA GATGGACGGA AGTGTAATGG AAGGGGGAGG ACAGATTTTA 
AGGGTGTCTG CGGCGCTGAG TTGCATCCAA GGGGCGTCAA TCAAAATAAA TAAAATCCGA 
GCCGGTAGAA GCACACCGGG TCTGAGGCCT CAGCATCTGT CAGGTCTGGA GCTGCTGAGG 
GACATGTGCA ACGGCAATCT GGAGGGAGCC ACAGTGGGAT CCTCCGAAAT TACGCTCACT 
CCGGGGAAAA TCAAGGGCGG GAATCACATC GCTGACACCC ACACGGCTGG AAGTGTGACT 
CTGCTGATGC AGGTTTCGCT GCCGTGTGCC CTGTTCGCTC AGGGGCCGTC AGAGCTGTGC 
CTGAAGGGAG GAACTAACGC TGAAATGGCA CCTCAAATAG ACTACACAGT GAAGGTCTTT 
AAACCAATAG TGGAGCGATT CGGAGTTCAG TTTGACTGCG ATTTAAGAAT GAGAGGTTAT 
TATCCGAAGG GAGGTGGTGA GGTGGTGCTC AAGGTGAACC CGGCAAAGGA ACTGAGTCCT 
ATTAATATGA CAGAAAGAGG GAACATCACT AAGATCTACG GCAGGGCCTT TGTGGCTGGA 
GTACTGCCAT TCAAGCTGGC GAAGGACATG TCGACGGCAG CCATTCGCAC TATCAGGAAA 
GAAATTAAGG ATTTGTACAT CAACATCCAG TCTCTGCAAG AGAAGGACAA GGCCTGCGGC 
AATGGCAATG GGATCATAAT AATTGCAGAA TCATCCACCG GCTGCATATT TGCAGGCTCA 
TCTCTTGGCA AAAAAAGGTG TCTATGCTGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq XP_017208594.1
CDS351..1160
Translation

Target ORF information:

RefSeq Version XM_017353105.1
Organism Danio rerio(Zebrafish)
Definition Danio rerio RNA 3'-terminal phosphate cyclase (rtca), transcript variant X1, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 XM_017353105.1

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
ATGGCCGCAA CTACGTTCGA GATGGACGGA AGTGTAATGG AAGGGGGAGG ACAGATTTTA 
AGGGTGTCTG CGGCGCTGAG TTGCATCCAA GGGGCGTCAA TCAAAATAAA TAAAATCCGA 
GCCGGTAGAA GCACACCGGG TCTGAGGCCT CAGCATCTGT CAGGTCTGGA GCTGCTGAGG 
GACATGTGCA ACGGCAATCT GGAGGGAGCC ACAGTGGGAT CCTCCGAAAT TACGCTCACT 
CCGGGGAAAA TCAAGGGCGG GAATCACATC GCTGACACCC ACACGGCTGG AAGTGTGACT 
CTGCTGATGC AGGTTTCGCT GCCGTGTGCC CTGTTCGCTC AGGGGCCGTC AGAGCTGTGC 
CTGAAGGGAG GAACTAACGC TGAAATGGCA CCTCAAATAG ACTACACAGT GAAGGTCTTT 
AAACCAATAG TGGAGCGATT CGGAGTTCAG TTTGACTGCG ATTTAAGAAT GAGAGGTTAT 
TATCCGAAGG GAGGTGGTGA GGTGGTGCTC AAGGTGAACC CGGCAAAGGA ACTGAGTCCT 
ATTAATATGA CAGAAAGAGG GAACATCACT AAGATCTACG GCAGGGCCTT TGTGGCTGGA 
GTACTGCCAT TCAAGCTGGC GAAGGACATG TCGACGGCAG CCATTCGCAC TATCAGGAAA 
GAAATTAAGG ATTTGTACAT CAACATCCAG TCTCTGCAAG AGAAGGACAA GGCCTGCGGC 
AATGGCAATG GGATCATAAT AATTGCAGAA TCATCCACCG GCTGCATATT TGCAGGCTCA 
TCTCTTGGCA AAAAAAGGTG TCTATGCTGA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

PubMed

book

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R


book

The zebrafish gene map defines ancestral vertebrate chromosomes.
Genome research15(9)1307-14(2005 Sep)
Woods IG,Wilson C,Friedlander B,Chang P,Reyes DK,Nix R,Kelly PD,Chu F,Postlethwait JH,Talbot WS


book

Hematopoietic gene expression profile in zebrafish kidney marrow.
Proceedings of the National Academy of Sciences of the United States of America101(46)16240-5(2004 Nov)
Song HD,Sun XJ,Deng M,Zhang GW,Zhou Y,Wu XY,Sheng Y,Chen Y,Ruan Z,Jiang CL,Fan HY,Zon LI,Kanki JP,Liu TX,Look AT,Chen Z