PRRX1B cDNA ORF clone, Danio rerio(Zebrafish)

Gene
Clones
gRNAs

Gene Symbol	PRRX1B
Entrez Gene ID	337089
Full Name	paired related homeobox 1b
Synonyms	fa97b09,wu:fa97b09,zgc:101095,zgc:64199
General protein information	Preferred Names paired related homeobox 1b Names paired mesoderm homeobox protein 1 phox1
Gene Type	protein-coding
Organism	Danio rerio(Zebrafish)

mRNA and Protein(s)

mRNA	Protein	Name
XM_017352441.2	XP_017207930.1	paired mesoderm homeobox protein 1 isoform X2
XM_017352441.1	XP_017207930.1	paired mesoderm homeobox protein 1 isoform X2
XM_005160643.4	XP_005160700.1	paired mesoderm homeobox protein 1 isoform X1
NM_200050.1	NP_956344.1	paired mesoderm homeobox protein 1
XM_005160643.3	XP_005160700.1	paired mesoderm homeobox protein 1 isoform X1

Pathways from BioSystems

Homologies

Homo sapiens (human)	PRRX1	NP_073207.1
Mus musculus (house mouse)	Prrx1	NP_035257.1
Gallus gallus (chicken)	PRRX1	NP_001007822.1
Danio rerio (zebrafish)	prrx1a	NP_999899.1
Pan troglodytes (chimpanzee)	PRRX1	XP_001141191.1
	PRRX1	XP_001097390.1
Bos taurus (cattle)	PRRX1	NP_001075208.1
Rattus norvegicus (Norway rat)	Prrx1	NP_722543.1
Canis lupus familiaris (dog)	PRRX1	XP_850725.1
Danio rerio (zebrafish)	prrx1b	NP_956344.1
Xenopus tropicalis (tropical clawed frog)	prrx1	XP_004913839.1

Gene Ontology
Bibliography

Related articles in PubMed

Essential Role of Nr2f Nuclear Receptors in Patterning the Vertebrate Upper Jaw.
Barske L, Rataud P, Behizad K, Del Rio L, Cox SG, Crump JG
Developmental cell(2018 Jan)

Diminished
Tucker NR, Dolmatova EV, Lin H, Cooper RR, Ye J, Hucker WJ, Jameson HS, Parsons VA, Weng LC, Mills RW, Sinner MF, Imakaev M, Leyton-Mange J, Vlahakes G, Benjamin EJ, Lunetta KL, Lubitz SA, Mirny L, Milan DJ, Ellinor PT
Circulation. Cardiovascular genetics10(5)(2017 Oct)

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

Competition between Jagged-Notch and Endothelin1 Signaling Selectively Restricts Cartilage Formation in the Zebrafish Upper Face.
Barske L, Askary A, Zuniga E, Balczerski B, Bump P, Nichols JT, Crump JG
PLoS genetics12(4)e1005967(2016 Apr)

RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

Prrx1b, a Prx-related homeobox protein, participates in the regulation of vmhc expression with other transcriptional factors.
Title: Promoter analysis of ventricular myosin heavy chain (vmhc) in zebrafish embryos.

The following PRRX1B gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the PRRX1B cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)
ODa35794	NM_200050.1 Latest version!	Danio rerio paired related homeobox 1b (prrx1b), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$174.30 $249.00
ODa24935	XM_005160643.4 Latest version!	Danio rerio paired related homeobox 1b (prrx1b), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$174.30 $249.00
ODa56543	XM_017352441.2 Latest version!	Danio rerio paired related homeobox 1b (prrx1b), transcript variant X2, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$174.30 $249.00
View Old Accession Versions >>
ODa56543	XM_017352441.1	Danio rerio paired related homeobox 1b (prrx1b), transcript variant X2, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	9-11	$174.30 $249.00
ODa24935	XM_005160643.3	Danio rerio paired related homeobox 1b (prrx1b), transcript variant X1, mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$174.30 $249.00
Hide Old Accession Versions >>

ORF Online Only Promotion

Next-day Shipping ORF Clones ( in default vector with tag)
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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

PRRX1B ( NM_200050.1 ) cDNA ORF clone, Danio rerio(Zebrafish) -> NP_956344.1 Danio rerio paired related homeobox 1b (prrx1b), mRNA.

Price & Availability↑

CloneID	ODa35794
Clone ID Related Accession (Same CDS sequence)	NM_200050.1
Accession Version	NM_200050.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 738bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-01-18
Organism	Danio rerio(zebrafish)
Product	paired mesoderm homeobox protein 1
Comment	Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC064671.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: BC064671.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END##

ATGACTTCTA GCTATGCACA TGTAATGGAC AGACAAGCAA CCATATCCAG CAGACTGGAG 
AGTCCCATTA CAGCCAACCT GGAAAACCTG CAAGCCAAAA AGAACTTCTC GGTGAGCCAC 
CTGTTGGATC TAGAGGAGGC AAGAGAAATG GTCGGTTCTC AGGTGGATGA AAGTGTTGGC 
GAAACGGGCA GGACTATGCT GGAATCTCCG GGTTTAACGA GTGGCAGTGA TACAACACAA 
CAAGAGAATG AGCAGCTGAA CTCAGAAGAA AAGAAGAAGC GGAAACAGCG GAGGAATAGA 
ACCACGTTTA ACAGCAGCCA GCTGCAGGCG CTGGAGCGAG TGTTTGAGCG GACACACTAC 
CCAGATGCCT TTGTTAGAGA GGACTTGGCA CGTAGGGTCA ATCTTACTGA GGCTAGAGTT 
CAGGTGTGGT TCCAAAATAG ACGGGCAAAG TTTCGGCGGA ATGAGCGGGC GATGCTGGCC 
AGTAAGAACG CTTCACTTCT TAAATCCTAT TCAGGAGACG TAACAGCAGT GGAACAGCCT 
ATCGTGCCCC GACCCGCACC ACGTCCAAAT GACTACCTAT CCTGGGGAAG CGCAGCCCCA 
TACAGCACCA TGGCAACCTA CCCACCCACT TGTGCCAACA CCACTTCCAC CCAGGGAATG 
AATATGGCCA ATAGCATTGC TAATCTGAGA CTGAAGGCCA AAGAATACAA CCTCAACCAG 
GTGCCTACTG TCAACTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_956344.1
CDS	362..1099
Translation	MTSSYAHVMDRQATISSRLESPITANLENLQAKKNFSVSHLLDLEEAREMVGSQVDESVGETGRTMLESPGLTSGSDTTQQENEQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLASKNASLLKSYSGDVTAVEQPIVPRPAPRPNDYLSWGSAAPYSTMATYPPTCANTTSTQGMNMANSIANLRLKAKEYNLNQVPTVN

Target ORF information:

RefSeq Version	NM_200050.1
Organism	Danio rerio(zebrafish)
Definition	Danio rerio paired related homeobox 1b (prrx1b), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_200050.1

ORF Insert Sequence:

ATGACTTCTA GCTATGCACA TGTAATGGAC AGACAAGCAA CCATATCCAG CAGACTGGAG 
AGTCCCATTA CAGCCAACCT GGAAAACCTG CAAGCCAAAA AGAACTTCTC GGTGAGCCAC 
CTGTTGGATC TAGAGGAGGC AAGAGAAATG GTCGGTTCTC AGGTGGATGA AAGTGTTGGC 
GAAACGGGCA GGACTATGCT GGAATCTCCG GGTTTAACGA GTGGCAGTGA TACAACACAA 
CAAGAGAATG AGCAGCTGAA CTCAGAAGAA AAGAAGAAGC GGAAACAGCG GAGGAATAGA 
ACCACGTTTA ACAGCAGCCA GCTGCAGGCG CTGGAGCGAG TGTTTGAGCG GACACACTAC 
CCAGATGCCT TTGTTAGAGA GGACTTGGCA CGTAGGGTCA ATCTTACTGA GGCTAGAGTT 
CAGGTGTGGT TCCAAAATAG ACGGGCAAAG TTTCGGCGGA ATGAGCGGGC GATGCTGGCC 
AGTAAGAACG CTTCACTTCT TAAATCCTAT TCAGGAGACG TAACAGCAGT GGAACAGCCT 
ATCGTGCCCC GACCCGCACC ACGTCCAAAT GACTACCTAT CCTGGGGAAG CGCAGCCCCA 
TACAGCACCA TGGCAACCTA CCCACCCACT TGTGCCAACA CCACTTCCAC CCAGGGAATG 
AATATGGCCA ATAGCATTGC TAATCTGAGA CTGAAGGCCA AAGAATACAA CCTCAACCAG 
GTGCCTACTG TCAACTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PRRX1B ( XM_005160643.4 ) cDNA ORF clone, Danio rerio(Zebrafish) -> XP_005160700.1 Danio rerio paired related homeobox 1b (prrx1b), transcript variant X1, mRNA.

Price & Availability↑

CloneID	ODa24935
Clone ID Related Accession (Same CDS sequence)	XM_005160643.4 , XM_005160643.3
Accession Version	XM_005160643.4 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 723bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-06-14
Organism	Danio rerio(zebrafish)
Product	paired mesoderm homeobox protein 1 isoform X1
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007131.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_005160643.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGACTTCTA GCTATGCACA TGTAATGGAC AGACAAGCAA CCATATCCAG CAGACTGGAG 
AGTCCCATTA CAGCCAACCT GGAAAACCTG CAAGCCAAAA AGAACTTCTC GGTGAGCCAC 
CTGTTGGATC TAGAGGAGGC AAGAGAAATG GTCGGTTCTC AGGTGGATGA AAGTGTTGGC 
GAAACGGGCA GGACTATGCT GGAATCTCCG GGTTTAACGA GTGGCAGTGA TACAACACAA 
CAAGAGAATG AGCAGCTGAA CTCAGAAGAA AAGAAGAAGC GGAAACAGCG GAGGAATAGA 
ACCACGTTTA ACAGCAGCCA GCTGCAGGCG CTGGAGCGAG TGTTTGAGCG GACACACTAC 
CCAGATGCCT TTGTTAGAGA GGACTTGGCA CGTAGGGTCA ATCTTACTGA GGCTAGAGTT 
CAGGTGTGGT TCCAAAATAG ACGGGCAAAG TTTCGGCGGA ATGAGCGGGC GATGCTGGCC 
AGTAAGAACG CTTCACTTCT TAAATCCTAT TCAGGAGACG TAACAGCAGT GGAACAGCCT 
ATCGTGCCCC GACCCGCACC ACGTCCAAAT GACTACCTAT CCTGGGGAAG CGCAGCCCCA 
TACAGCTGGT ACCCAAGGCC GGAGGGAGGG CCAATGCGAG TGCCACAGAA AATGCTGCCC 
ACAGAAACAC CATGGCAACC TACCCACCCA CTTGTGCCAA CACCACTTCC ACCCAGGGAA 
TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_005160700.1
CDS	568..1290
Translation	MTSSYAHVMDRQATISSRLESPITANLENLQAKKNFSVSHLLDLEEAREMVGSQVDESVGETGRTMLESPGLTSGSDTTQQENEQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLASKNASLLKSYSGDVTAVEQPIVPRPAPRPNDYLSWGSAAPYSWYPRPEGGPMRVPQKMLPTETPWQPTHPLVPTPLPPRE

Target ORF information:

RefSeq Version	XM_005160643.4
Organism	Danio rerio(zebrafish)
Definition	Danio rerio paired related homeobox 1b (prrx1b), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_005160643.4

ORF Insert Sequence:

ATGACTTCTA GCTATGCACA TGTAATGGAC AGACAAGCAA CCATATCCAG CAGACTGGAG 
AGTCCCATTA CAGCCAACCT GGAAAACCTG CAAGCCAAAA AGAACTTCTC GGTGAGCCAC 
CTGTTGGATC TAGAGGAGGC AAGAGAAATG GTCGGTTCTC AGGTGGATGA AAGTGTTGGC 
GAAACGGGCA GGACTATGCT GGAATCTCCG GGTTTAACGA GTGGCAGTGA TACAACACAA 
CAAGAGAATG AGCAGCTGAA CTCAGAAGAA AAGAAGAAGC GGAAACAGCG GAGGAATAGA 
ACCACGTTTA ACAGCAGCCA GCTGCAGGCG CTGGAGCGAG TGTTTGAGCG GACACACTAC 
CCAGATGCCT TTGTTAGAGA GGACTTGGCA CGTAGGGTCA ATCTTACTGA GGCTAGAGTT 
CAGGTGTGGT TCCAAAATAG ACGGGCAAAG TTTCGGCGGA ATGAGCGGGC GATGCTGGCC 
AGTAAGAACG CTTCACTTCT TAAATCCTAT TCAGGAGACG TAACAGCAGT GGAACAGCCT 
ATCGTGCCCC GACCCGCACC ACGTCCAAAT GACTACCTAT CCTGGGGAAG CGCAGCCCCA 
TACAGCTGGT ACCCAAGGCC GGAGGGAGGG CCAATGCGAG TGCCACAGAA AATGCTGCCC 
ACAGAAACAC CATGGCAACC TACCCACCCA CTTGTGCCAA CACCACTTCC ACCCAGGGAA 
TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PRRX1B ( XM_005160643.3 ) cDNA ORF clone, Danio rerio(Zebrafish) -> XP_005160700.1 Danio rerio paired related homeobox 1b (prrx1b), transcript variant X1, mRNA.

Price & Availability↑

CloneID	ODa24935
Clone ID Related Accession (Same CDS sequence)	XM_005160643.4 , XM_005160643.3
Accession Version	XM_005160643.3	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 723bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-06-23
Organism	Danio rerio(Zebrafish)
Product	paired mesoderm homeobox protein 1 isoform X1
Comment	MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007131.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_005160643.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGACTTCTA GCTATGCACA TGTAATGGAC AGACAAGCAA CCATATCCAG CAGACTGGAG 
AGTCCCATTA CAGCCAACCT GGAAAACCTG CAAGCCAAAA AGAACTTCTC GGTGAGCCAC 
CTGTTGGATC TAGAGGAGGC AAGAGAAATG GTCGGTTCTC AGGTGGATGA AAGTGTTGGC 
GAAACGGGCA GGACTATGCT GGAATCTCCG GGTTTAACGA GTGGCAGTGA TACAACACAA 
CAAGAGAATG AGCAGCTGAA CTCAGAAGAA AAGAAGAAGC GGAAACAGCG GAGGAATAGA 
ACCACGTTTA ACAGCAGCCA GCTGCAGGCG CTGGAGCGAG TGTTTGAGCG GACACACTAC 
CCAGATGCCT TTGTTAGAGA GGACTTGGCA CGTAGGGTCA ATCTTACTGA GGCTAGAGTT 
CAGGTGTGGT TCCAAAATAG ACGGGCAAAG TTTCGGCGGA ATGAGCGGGC GATGCTGGCC 
AGTAAGAACG CTTCACTTCT TAAATCCTAT TCAGGAGACG TAACAGCAGT GGAACAGCCT 
ATCGTGCCCC GACCCGCACC ACGTCCAAAT GACTACCTAT CCTGGGGAAG CGCAGCCCCA 
TACAGCTGGT ACCCAAGGCC GGAGGGAGGG CCAATGCGAG TGCCACAGAA AATGCTGCCC 
ACAGAAACAC CATGGCAACC TACCCACCCA CTTGTGCCAA CACCACTTCC ACCCAGGGAA 
TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_005160700.1
CDS	573..1295
Translation	MTSSYAHVMDRQATISSRLESPITANLENLQAKKNFSVSHLLDLEEAREMVGSQVDESVGETGRTMLESPGLTSGSDTTQQENEQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLASKNASLLKSYSGDVTAVEQPIVPRPAPRPNDYLSWGSAAPYSWYPRPEGGPMRVPQKMLPTETPWQPTHPLVPTPLPPRE

Target ORF information:

RefSeq Version	XM_005160643.3
Organism	Danio rerio(Zebrafish)
Definition	Danio rerio paired related homeobox 1b (prrx1b), transcript variant X1, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_005160643.3

ORF Insert Sequence:

ATGACTTCTA GCTATGCACA TGTAATGGAC AGACAAGCAA CCATATCCAG CAGACTGGAG 
AGTCCCATTA CAGCCAACCT GGAAAACCTG CAAGCCAAAA AGAACTTCTC GGTGAGCCAC 
CTGTTGGATC TAGAGGAGGC AAGAGAAATG GTCGGTTCTC AGGTGGATGA AAGTGTTGGC 
GAAACGGGCA GGACTATGCT GGAATCTCCG GGTTTAACGA GTGGCAGTGA TACAACACAA 
CAAGAGAATG AGCAGCTGAA CTCAGAAGAA AAGAAGAAGC GGAAACAGCG GAGGAATAGA 
ACCACGTTTA ACAGCAGCCA GCTGCAGGCG CTGGAGCGAG TGTTTGAGCG GACACACTAC 
CCAGATGCCT TTGTTAGAGA GGACTTGGCA CGTAGGGTCA ATCTTACTGA GGCTAGAGTT 
CAGGTGTGGT TCCAAAATAG ACGGGCAAAG TTTCGGCGGA ATGAGCGGGC GATGCTGGCC 
AGTAAGAACG CTTCACTTCT TAAATCCTAT TCAGGAGACG TAACAGCAGT GGAACAGCCT 
ATCGTGCCCC GACCCGCACC ACGTCCAAAT GACTACCTAT CCTGGGGAAG CGCAGCCCCA 
TACAGCTGGT ACCCAAGGCC GGAGGGAGGG CCAATGCGAG TGCCACAGAA AATGCTGCCC 
ACAGAAACAC CATGGCAACC TACCCACCCA CTTGTGCCAA CACCACTTCC ACCCAGGGAA 
TGA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PRRX1B ( XM_017352441.2 ) cDNA ORF clone, Danio rerio(Zebrafish) -> XP_017207930.1 Danio rerio paired related homeobox 1b (prrx1b), transcript variant X2, mRNA.

Price & Availability↑

CloneID	ODa56543
Clone ID Related Accession (Same CDS sequence)	XM_017352441.2 , XM_017352441.1
Accession Version	XM_017352441.2 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 804bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2017-06-14
Organism	Danio rerio(zebrafish)
Product	paired mesoderm homeobox protein 1 isoform X2
Comment	Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007131.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_017352441.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGACTTCTA GCTATGCACA TGTAATGGAC AGACAAGCAA CCATATCCAG CAGACTGGAG 
AGTCCCATTA CAGCCAACCT GGAAAACCTG CAAGCCAAAA AGAACTTCTC GGTGAGCCAC 
CTGTTGGATC TAGAGGAGGC AAGAGAAATG GTCGGTTCTC AGGTGGATGA AAGTGTTGGC 
GAAACGGGCA GGACTATGCT GGAATCTCCG GGTTTAACGA GTGGCAGTGA TACAACACAA 
CAAGAGAATG AGCAGCTGAA CTCAGAAGAA AAGAAGAAGC GGAAACAGCG GAGGAATAGA 
ACCACGTTTA ACAGCAGCCA GCTGCAGGCG CTGGAGCGAG TGTTTGAGCG GACACACTAC 
CCAGATGCCT TTGTTAGAGA GGACTTGGCA CGTAGGGTCA ATCTTACTGA GGCTAGAGTT 
CAGGTGTGGT TCCAAAATAG ACGGGCAAAG TTTCGGCGGA ATGAGCGGGC GATGCTGGCC 
AGTAAGAACG CTTCACTTCT TAAATCCTAT TCAGGAGACG TAACAGCAGT GGAACAGCCT 
ATCGTGCCCC GACCCGCACC ACGTCCAAAT GACTACCTAT CCTGGGGAAG CGCAGCCCCA 
TACAGCTGGT ACCCAAGGCC GGAGGGAGGG CCAATGCGAG TGCCACAGAA AATGCTGCCC 
ACAGAAAGCA ACACCATGGC AACCTACCCA CCCACTTGTG CCAACACCAC TTCCACCCAG 
GGAATGAATA TGGCCAATAG CATTGCTAAT CTGAGACTGA AGGCCAAAGA ATACAACCTC 
AACCAGGTGC CTACTGTCAA CTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_017207930.1
CDS	568..1371
Translation	MTSSYAHVMDRQATISSRLESPITANLENLQAKKNFSVSHLLDLEEAREMVGSQVDESVGETGRTMLESPGLTSGSDTTQQENEQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLASKNASLLKSYSGDVTAVEQPIVPRPAPRPNDYLSWGSAAPYSWYPRPEGGPMRVPQKMLPTESNTMATYPPTCANTTSTQGMNMANSIANLRLKAKEYNLNQVPTVN

Target ORF information:

RefSeq Version	XM_017352441.2
Organism	Danio rerio(zebrafish)
Definition	Danio rerio paired related homeobox 1b (prrx1b), transcript variant X2, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_017352441.2

ORF Insert Sequence:

ATGACTTCTA GCTATGCACA TGTAATGGAC AGACAAGCAA CCATATCCAG CAGACTGGAG 
AGTCCCATTA CAGCCAACCT GGAAAACCTG CAAGCCAAAA AGAACTTCTC GGTGAGCCAC 
CTGTTGGATC TAGAGGAGGC AAGAGAAATG GTCGGTTCTC AGGTGGATGA AAGTGTTGGC 
GAAACGGGCA GGACTATGCT GGAATCTCCG GGTTTAACGA GTGGCAGTGA TACAACACAA 
CAAGAGAATG AGCAGCTGAA CTCAGAAGAA AAGAAGAAGC GGAAACAGCG GAGGAATAGA 
ACCACGTTTA ACAGCAGCCA GCTGCAGGCG CTGGAGCGAG TGTTTGAGCG GACACACTAC 
CCAGATGCCT TTGTTAGAGA GGACTTGGCA CGTAGGGTCA ATCTTACTGA GGCTAGAGTT 
CAGGTGTGGT TCCAAAATAG ACGGGCAAAG TTTCGGCGGA ATGAGCGGGC GATGCTGGCC 
AGTAAGAACG CTTCACTTCT TAAATCCTAT TCAGGAGACG TAACAGCAGT GGAACAGCCT 
ATCGTGCCCC GACCCGCACC ACGTCCAAAT GACTACCTAT CCTGGGGAAG CGCAGCCCCA 
TACAGCTGGT ACCCAAGGCC GGAGGGAGGG CCAATGCGAG TGCCACAGAA AATGCTGCCC 
ACAGAAAGCA ACACCATGGC AACCTACCCA CCCACTTGTG CCAACACCAC TTCCACCCAG 
GGAATGAATA TGGCCAATAG CATTGCTAAT CTGAGACTGA AGGCCAAAGA ATACAACCTC 
AACCAGGTGC CTACTGTCAA CTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PRRX1B ( XM_017352441.1 ) cDNA ORF clone, Danio rerio(Zebrafish) -> XP_017207930.1 Danio rerio paired related homeobox 1b (prrx1b), transcript variant X2, mRNA.

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CloneID	ODa56543
Clone ID Related Accession (Same CDS sequence)	XM_017352441.2 , XM_017352441.1
Accession Version	XM_017352441.1	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 804bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2016-06-23
Organism	Danio rerio(Zebrafish)
Product	paired mesoderm homeobox protein 1 isoform X2
Comment	MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007131.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END##

ATGACTTCTA GCTATGCACA TGTAATGGAC AGACAAGCAA CCATATCCAG CAGACTGGAG 
AGTCCCATTA CAGCCAACCT GGAAAACCTG CAAGCCAAAA AGAACTTCTC GGTGAGCCAC 
CTGTTGGATC TAGAGGAGGC AAGAGAAATG GTCGGTTCTC AGGTGGATGA AAGTGTTGGC 
GAAACGGGCA GGACTATGCT GGAATCTCCG GGTTTAACGA GTGGCAGTGA TACAACACAA 
CAAGAGAATG AGCAGCTGAA CTCAGAAGAA AAGAAGAAGC GGAAACAGCG GAGGAATAGA 
ACCACGTTTA ACAGCAGCCA GCTGCAGGCG CTGGAGCGAG TGTTTGAGCG GACACACTAC 
CCAGATGCCT TTGTTAGAGA GGACTTGGCA CGTAGGGTCA ATCTTACTGA GGCTAGAGTT 
CAGGTGTGGT TCCAAAATAG ACGGGCAAAG TTTCGGCGGA ATGAGCGGGC GATGCTGGCC 
AGTAAGAACG CTTCACTTCT TAAATCCTAT TCAGGAGACG TAACAGCAGT GGAACAGCCT 
ATCGTGCCCC GACCCGCACC ACGTCCAAAT GACTACCTAT CCTGGGGAAG CGCAGCCCCA 
TACAGCTGGT ACCCAAGGCC GGAGGGAGGG CCAATGCGAG TGCCACAGAA AATGCTGCCC 
ACAGAAAGCA ACACCATGGC AACCTACCCA CCCACTTGTG CCAACACCAC TTCCACCCAG 
GGAATGAATA TGGCCAATAG CATTGCTAAT CTGAGACTGA AGGCCAAAGA ATACAACCTC 
AACCAGGTGC CTACTGTCAA CTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	XP_017207930.1
CDS	573..1376
Translation	MTSSYAHVMDRQATISSRLESPITANLENLQAKKNFSVSHLLDLEEAREMVGSQVDESVGETGRTMLESPGLTSGSDTTQQENEQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLASKNASLLKSYSGDVTAVEQPIVPRPAPRPNDYLSWGSAAPYSWYPRPEGGPMRVPQKMLPTESNTMATYPPTCANTTSTQGMNMANSIANLRLKAKEYNLNQVPTVN

Target ORF information:

RefSeq Version	XM_017352441.1
Organism	Danio rerio(Zebrafish)
Definition	Danio rerio paired related homeobox 1b (prrx1b), transcript variant X2, mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

XM_017352441.1

ORF Insert Sequence:

ATGACTTCTA GCTATGCACA TGTAATGGAC AGACAAGCAA CCATATCCAG CAGACTGGAG 
AGTCCCATTA CAGCCAACCT GGAAAACCTG CAAGCCAAAA AGAACTTCTC GGTGAGCCAC 
CTGTTGGATC TAGAGGAGGC AAGAGAAATG GTCGGTTCTC AGGTGGATGA AAGTGTTGGC 
GAAACGGGCA GGACTATGCT GGAATCTCCG GGTTTAACGA GTGGCAGTGA TACAACACAA 
CAAGAGAATG AGCAGCTGAA CTCAGAAGAA AAGAAGAAGC GGAAACAGCG GAGGAATAGA 
ACCACGTTTA ACAGCAGCCA GCTGCAGGCG CTGGAGCGAG TGTTTGAGCG GACACACTAC 
CCAGATGCCT TTGTTAGAGA GGACTTGGCA CGTAGGGTCA ATCTTACTGA GGCTAGAGTT 
CAGGTGTGGT TCCAAAATAG ACGGGCAAAG TTTCGGCGGA ATGAGCGGGC GATGCTGGCC 
AGTAAGAACG CTTCACTTCT TAAATCCTAT TCAGGAGACG TAACAGCAGT GGAACAGCCT 
ATCGTGCCCC GACCCGCACC ACGTCCAAAT GACTACCTAT CCTGGGGAAG CGCAGCCCCA 
TACAGCTGGT ACCCAAGGCC GGAGGGAGGG CCAATGCGAG TGCCACAGAA AATGCTGCCC 
ACAGAAAGCA ACACCATGGC AACCTACCCA CCCACTTGTG CCAACACCAC TTCCACCCAG 
GGAATGAATA TGGCCAATAG CATTGCTAAT CTGAGACTGA AGGCCAAAGA ATACAACCTC 
AACCAGGTGC CTACTGTCAA CTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Essential Role of Nr2f Nuclear Receptors in Patterning the Vertebrate Upper Jaw.
Developmental cell(2018 Jan)
Barske L,Rataud P,Behizad K,Del Rio L,Cox SG,Crump JG

Diminished
Circulation. Cardiovascular genetics10(5)(2017 Oct)
Tucker NR,Dolmatova EV,Lin H,Cooper RR,Ye J,Hucker WJ,Jameson HS,Parsons VA,Weng LC,Mills RW,Sinner MF,Imakaev M,Leyton-Mange J,Vlahakes G,Benjamin EJ,Lunetta KL,Lubitz SA,Mirny L,Milan DJ,Ellinor PT

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J

Competition between Jagged-Notch and Endothelin1 Signaling Selectively Restricts Cartilage Formation in the Zebrafish Upper Face.
PLoS genetics12(4)e1005967(2016 Apr)
Barske L,Askary A,Zuniga E,Balczerski B,Bump P,Nichols JT,Crump JG

RFX transcription factors are essential for hearing in mice.
Nature communications68549(2015 Oct)
Elkon R,Milon B,Morrison L,Shah M,Vijayakumar S,Racherla M,Leitch CC,Silipino L,Hadi S,Weiss-Gayet M,Barras E,Schmid CD,Ait-Lounis A,Barnes A,Song Y,Eisenman DJ,Eliyahu E,Frolenkov GI,Strome SE,Durand B,Zaghloul NA,Jones SM,Reith W,Hertzano R

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PRRX1B cDNA ORF clone, Danio rerio(Zebrafish)

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Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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