Gene Symbol | PRRX1 |
Entrez Gene ID | 373941 |
Full Name | paired related homeobox 1 |
Synonyms | PMX1,Prx-1,Prx1,gMHox |
General protein information |
|
Gene Type | protein-coding |
Organism | Gallus gallus(chicken) |
ORF » Species Summary » Gallus gallus » PRRX1 cDNA ORF clone
Gene Symbol | PRRX1 |
Entrez Gene ID | 373941 |
Full Name | paired related homeobox 1 |
Synonyms | PMX1,Prx-1,Prx1,gMHox |
General protein information |
|
Gene Type | protein-coding |
Organism | Gallus gallus(chicken) |
mRNA | Protein | Name |
---|---|---|
XM_015290230.2 | XP_015145716.1 | paired mesoderm homeobox protein 1 isoform X1 |
XM_015290231.2 | XP_015145717.1 | paired mesoderm homeobox protein 1 isoform X2 |
NM_001007821.1 | NP_001007822.1 | paired mesoderm homeobox protein 1 |
NM_001277724.1 | NP_001264653.1 | paired mesoderm homeobox protein 1 |
NM_001277724.2 | NP_001264653.1 | paired mesoderm homeobox protein 1 |
XM_015290230.1 | XP_015145716.1 | paired mesoderm homeobox protein 1 isoform X1 |
XM_015290231.1 | XP_015145717.1 | paired mesoderm homeobox protein 1 isoform X2 |
Homo sapiens (human) | PRRX1 | NP_073207.1 |
Mus musculus (house mouse) | Prrx1 | NP_035257.1 |
Gallus gallus (chicken) | PRRX1 | NP_001007822.1 |
Danio rerio (zebrafish) | prrx1a | NP_999899.1 |
Pan troglodytes (chimpanzee) | PRRX1 | XP_001141191.1 |
PRRX1 | XP_001097390.1 | |
Bos taurus (cattle) | PRRX1 | NP_001075208.1 |
Rattus norvegicus (Norway rat) | Prrx1 | NP_722543.1 |
Canis lupus familiaris (dog) | PRRX1 | XP_850725.1 |
Danio rerio (zebrafish) | prrx1b | NP_956344.1 |
Xenopus tropicalis (tropical clawed frog) | prrx1 | XP_004913839.1 |
Signaling pathways regulating the expression of Prx1 and Prx2 in the chick mandibular mesenchyme.
Doufexi AE, Mina M
Developmental dynamics : an official publication of the American Association of Anatomists237(11)3115-27(2008 Nov)
Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index.
Carre W, Wang X, Porter TE, Nys Y, Tang J, Bernberg E, Morgan R, Burnside J, Aggrey SE, Simon J, Cogburn LA
Physiological genomics25(3)514-24(2006 May)
A comprehensive collection of chicken cDNAs.
Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong WT, Tickle C, Brown WR, Wilson SA, Hubbard SJ
Current biology : CB12(22)1965-9(2002 Nov)
A set of Hox proteins interact with the Maf oncoprotein to inhibit its DNA binding, transactivation, and transforming activities.
Kataoka K, Yoshitomo-Nakagawa K, Shioda S, Nishizawa M
The Journal of biological chemistry276(1)819-26(2001 Jan)
A chicken homeobox gene related to Drosophila paired is predominantly expressed in the developing limb.
Nohno T, Koyama E, Myokai F, Taniguchi S, Ohuchi H, Saito T, Noji S
Developmental biology158(1)254-64(1993 Jul)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
Signaling pathways regulating the expression of Prx1 and Prx2 in the chick mandibular mesenchyme.
Title: Signaling pathways regulating the expression of Prx1 and Prx2 in the chick mandibular mesenchyme.
The following PRRX1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the PRRX1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OGa00053 | |
Clone ID Related Accession (Same CDS sequence) | NM_001277724.1 , NM_001277724.2 | |
Accession Version | NM_001277724.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 738bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-10-02 | |
Organism | Gallus gallus(chicken) | |
Product | paired mesoderm homeobox protein 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CD214940.1, BX258858.4, AF461698.1, AL585199.1, BU311875.1, S69088.1 and AADN04000105.1. Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein. Sequence Note: This RefSeq record was created from transcript and genomic sequence data from different strains because no single transcript from the same strain was available for the full length of the gene. The extent of this transcript is supported by transcript alignments and orthologous data. ##Evidence-Data-START## Transcript exon combination :: D13433.1, S69088.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2201357, SAMEA2201358 [ECO:0000350] ##Evidence-Data-END## |
1 | ATGGCGTCCA GCTATGCCCA CGCCATGGAG AGGCAGGCCC TGCTGCCAGC CCGCCTCGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001264653.1 |
CDS | 236..973 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001277724.1 |
1 | ATGGCGTCCA GCTATGCCCA CGCCATGGAG AGGCAGGCCC TGCTGCCAGC CCGCCTCGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OGa00053 | |
Clone ID Related Accession (Same CDS sequence) | NM_001277724.1 , NM_001277724.2 | |
Accession Version | NM_001277724.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 738bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-09-26 | |
Organism | Gallus gallus(chicken) | |
Product | paired mesoderm homeobox protein 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AADN05000934.1. On Dec 20, 2018 this sequence version replaced NM_001277724.1. Sequence Note: This RefSeq record was created from transcript and genomic sequence data from different strains because no single transcript from the same strain was available for the full length of the gene. The extent of this transcript is supported by transcript alignments and orthologous data. ##Evidence-Data-START## Transcript exon combination :: HAEL01007439.1, D13433.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2201357, SAMEA2201358 [ECO:0000350] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGCGTCCA GCTATGCCCA CGCCATGGAG AGGCAGGCCC TGCTGCCAGC CCGCCTCGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001264653.1 |
CDS | 236..973 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001277724.2 |
1 | ATGGCGTCCA GCTATGCCCA CGCCATGGAG AGGCAGGCCC TGCTGCCAGC CCGCCTCGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OGa27606 | |
Clone ID Related Accession (Same CDS sequence) | NM_001007821.1 | |
Accession Version | NM_001007821.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 738bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-09-30 | |
Organism | Gallus gallus(chicken) | |
Product | paired mesoderm homeobox protein 1 | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from S69088.1. On Dec 15, 2004 this sequence version replaced XM_422237.1. Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 encode the same protein. ##Evidence-Data-START## Transcript exon combination :: S69088.1, D13433.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA2201357, SAMEA2201358 [ECO:0000350] ##Evidence-Data-END## |
1 | ATGGCGTCCA GCTATGCCCA CGCCATGGAG AGGCAGGCCC TGCTGCCAGC CCGCCTCGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001007822.1 |
CDS | 31..768 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001007821.1 |
1 | ATGGCGTCCA GCTATGCCCA CGCCATGGAG AGGCAGGCCC TGCTGCCAGC CCGCCTCGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OGa152214 | |
Clone ID Related Accession (Same CDS sequence) | XM_015290230.2 | |
Accession Version | XM_015290230.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 651bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-05-16 | |
Organism | Gallus gallus(chicken) | |
Product | paired mesoderm homeobox protein 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_006095.5) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On May 17, 2018 this sequence version replaced XM_015290230.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCGTCCA GCTATGCCCA CGCCATGGAG AGGCAGGCCC TGCTGCCAGC CCGCCTCGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_015145716.1 |
CDS | 323..973 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015290230.2 |
1 | ATGGCGTCCA GCTATGCCCA CGCCATGGAG AGGCAGGCCC TGCTGCCAGC CCGCCTCGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OGa152215 | |
Clone ID Related Accession (Same CDS sequence) | XM_015290231.2 | |
Accession Version | XM_015290231.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 642bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-05-16 | |
Organism | Gallus gallus(chicken) | |
Product | paired mesoderm homeobox protein 1 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_006095.5) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On May 17, 2018 this sequence version replaced XM_015290231.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCGTCCA GCTATGCCCA CGCCATGGAG AGGCAGGCCC TGCTGCCAGC CCGCCTCGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_015145717.1 |
CDS | 322..963 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015290231.2 |
1 | ATGGCGTCCA GCTATGCCCA CGCCATGGAG AGGCAGGCCC TGCTGCCAGC CCGCCTCGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OGa38840 | |
Clone ID Related Accession (Same CDS sequence) | XM_015290230.1 | |
Accession Version | XM_015290230.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 651bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-01-03 | |
Organism | Gallus gallus(chicken) | |
Product | paired mesoderm homeobox protein 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NT_455907.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Gallus gallus Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCGTCCA GCTATGCCCA CGCCATGGAG AGGCAGGCCC TGCTGCCAGC CCGCCTCGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_015145716.1 |
CDS | 320..970 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015290230.1 |
1 | ATGGCGTCCA GCTATGCCCA CGCCATGGAG AGGCAGGCCC TGCTGCCAGC CCGCCTCGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OGa38841 | |
Clone ID Related Accession (Same CDS sequence) | XM_015290231.1 | |
Accession Version | XM_015290231.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 642bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-01-03 | |
Organism | Gallus gallus(chicken) | |
Product | paired mesoderm homeobox protein 1 isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NT_455907.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Gallus gallus Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCGTCCA GCTATGCCCA CGCCATGGAG AGGCAGGCCC TGCTGCCAGC CCGCCTCGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_015145717.1 |
CDS | 319..960 |
Translation |
Target ORF information:
Target ORF information:
|
XM_015290231.1 |
1 | ATGGCGTCCA GCTATGCCCA CGCCATGGAG AGGCAGGCCC TGCTGCCAGC CCGCCTCGAC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Signaling pathways regulating the expression of Prx1 and Prx2 in the chick mandibular mesenchyme. |
Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index. |
A comprehensive collection of chicken cDNAs. |
A set of Hox proteins interact with the Maf oncoprotein to inhibit its DNA binding, transactivation, and transforming activities. |
A chicken homeobox gene related to Drosophila paired is predominantly expressed in the developing limb. |