Gene Symbol | si:dkey-40c11.1 |
Entrez Gene ID | 564545 |
Full Name | si:dkey-40c11.1 |
General protein information |
|
Gene Type | protein-coding |
Organism | Danio rerio(zebrafish) |
ORF » Species Summary » Danio rerio » si:dkey-40c11.1 cDNA ORF clone
gRNAs
Gene Symbol | si:dkey-40c11.1 |
Entrez Gene ID | 564545 |
Full Name | si:dkey-40c11.1 |
General protein information |
|
Gene Type | protein-coding |
Organism | Danio rerio(zebrafish) |
mRNA | Protein | Name |
---|---|---|
XM_005165339.3 | XP_005165396.1 | rhotekin isoform X1 |
XM_005165340.3 | XP_005165397.1 | rhotekin isoform X2 |
NM_001126415.1 | NP_001119887.1 | rhotekin |
XM_005165339.4 | XP_005165396.1 | rhotekin isoform X1 |
XM_005165341.3 | XP_005165398.1 | rhotekin isoform X3 |
XM_005165340.4 | XP_005165397.1 | rhotekin isoform X2 |
XM_005165341.4 | XP_005165398.1 | rhotekin isoform X3 |
Homo sapiens (human) | RTKN | NP_001015055.1 |
Pan troglodytes (chimpanzee) | RTKN | XP_001157465.1 |
Bos taurus (cattle) | RTKN | NP_001029853.1 |
Rattus norvegicus (Norway rat) | Rtkn | NP_908935.1 |
Danio rerio (zebrafish) | si:dkey-40c11.1 | NP_001119887.1 |
RTKN | XP_001108982.1 | |
Canis lupus familiaris (dog) | RTKN | XP_532998.2 |
Mus musculus (house mouse) | Rtkn | NP_001129699.1 |
Xenopus tropicalis (tropical clawed frog) | rtkn | NP_001096383.1 |
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)
RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following si:dkey-40c11.1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the si:dkey-40c11.1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ODa31288 | |
Clone ID Related Accession (Same CDS sequence) | NM_001126415.1 | |
Accession Version | NM_001126415.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1893bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-11-23 | |
Organism | Danio rerio(zebrafish) | |
Product | rhotekin | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BX784028.13. On Jul 31, 2008 this sequence version replaced XM_687876.2. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMN06645146 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGAATAACA CGAAGAACCA GCGAGACAGT GACATCCAGA AGAAGATTGA CTATGAGATA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001119887.1 |
CDS | 124..2016 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGAATAACA CGAAGAACCA GCGAGACAGT GACATCCAGA AGAAGATTGA CTATGAGATA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa10726 | |
Clone ID Related Accession (Same CDS sequence) | XM_005165339.3 , XM_005165339.4 | |
Accession Version | XM_005165339.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1980bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | rhotekin isoform X1 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007116.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_005165339.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTTTTGTC GAAATCAGAC ATCGAGGGCG ACCGTCGCTC GGGGCTCGGC ACTGGAGATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005165396.1 |
CDS | 329..2308 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGTTTTGTC GAAATCAGAC ATCGAGGGCG ACCGTCGCTC GGGGCTCGGC ACTGGAGATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa10726 | |
Clone ID Related Accession (Same CDS sequence) | XM_005165339.3 , XM_005165339.4 | |
Accession Version | XM_005165339.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1980bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | rhotekin isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007116.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_005165339.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTTTTGTC GAAATCAGAC ATCGAGGGCG ACCGTCGCTC GGGGCTCGGC ACTGGAGATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005165396.1 |
CDS | 298..2277 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTTTTGTC GAAATCAGAC ATCGAGGGCG ACCGTCGCTC GGGGCTCGGC ACTGGAGATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa10727 | |
Clone ID Related Accession (Same CDS sequence) | XM_005165340.3 , XM_005165340.4 | |
Accession Version | XM_005165340.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1965bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | rhotekin isoform X2 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007116.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_005165340.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCCCATAG ACAGACTCGC AGACATGGAG GAGAAACTTC GCATTTTGGA GGATCTCAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005165397.1 |
CDS | 591..2555 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCCCATAG ACAGACTCGC AGACATGGAG GAGAAACTTC GCATTTTGGA GGATCTCAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa10727 | |
Clone ID Related Accession (Same CDS sequence) | XM_005165340.3 , XM_005165340.4 | |
Accession Version | XM_005165340.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1965bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | rhotekin isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007116.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_005165340.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCCCATAG ACAGACTCGC AGACATGGAG GAGAAACTTC GCATTTTGGA GGATCTCAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005165397.1 |
CDS | 573..2537 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCCCATAG ACAGACTCGC AGACATGGAG GAGAAACTTC GCATTTTGGA GGATCTCAAT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa10728 | |
Clone ID Related Accession (Same CDS sequence) | XM_005165341.3 , XM_005165341.4 | |
Accession Version | XM_005165341.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1470bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-23 | |
Organism | Danio rerio(Zebrafish) | |
Product | rhotekin isoform X3 | |
Comment | MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007116.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 24, 2016 this sequence version replaced XM_005165341.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTTTTGTC GAAATCAGAC ATCGAGGGCG ACCGTCGCTC GGGGCTCGGC ACTGGAGATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005165398.1 |
CDS | 330..1799 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTTTTGTC GAAATCAGAC ATCGAGGGCG ACCGTCGCTC GGGGCTCGGC ACTGGAGATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa10728 | |
Clone ID Related Accession (Same CDS sequence) | XM_005165341.3 , XM_005165341.4 | |
Accession Version | XM_005165341.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1470bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | rhotekin isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007116.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 15, 2017 this sequence version replaced XM_005165341.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTTTTGTC GAAATCAGAC ATCGAGGGCG ACCGTCGCTC GGGGCTCGGC ACTGGAGATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005165398.1 |
CDS | 298..1767 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTTTTGTC GAAATCAGAC ATCGAGGGCG ACCGTCGCTC GGGGCTCGGC ACTGGAGATG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. |
RFX transcription factors are essential for hearing in mice. |