st cDNA ORF clone, Drosophila melanogaster(fruit fly)

Gene
Clones
gRNAs

Summary

Gene Symbol	st
Entrez Gene ID	39836
Full Name	scarlet
Synonyms	CG4314,Dmel\CG4314
General protein information	Preferred Names scarlet Names CG4314 gene product from transcript CG4314-RA CG4314-PA st-PA
Gene Type	protein-coding
Organism	Drosophila melanogaster(fruit fly)
Genome	Chromosome: 3L Map Location: 73A3-73A3\|3-44.0 cM

mRNA and Protein(s)

mRNA	Protein	Name
NM_079384.5	NP_524108.1	scarlet

Pathways from BioSystems

Homologies

Caenorhabditis elegans (roundworm)	wht-3	NP_497825.1
Caenorhabditis elegans (roundworm)	wht-6	NP_498425.2
Anopheles gambiae (African malaria mosquito)	AgaP_AGAP000506	XP_310585.4
Caenorhabditis elegans (roundworm)	wht-2	NP_502164.1
Drosophila melanogaster (fruit fly)	st	NP_524108.1
Caenorhabditis elegans (roundworm)	wht-8	NP_499442.2

Gene Ontology
Bibliography

Related articles in PubMed

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
Matthews BB, Dos Santos G, Crosby MA, Emmert DB, St Pierre SE, Gramates LS, Zhou P, Schroeder AJ, Falls K, Strelets V, Russo SM, Gelbart WM,
G3 (Bethesda, Md.)5(8)1721-36(2015 Jun)

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
Crosby MA, Gramates LS, Dos Santos G, Matthews BB, St Pierre SE, Zhou P, Schroeder AJ, Falls K, Emmert DB, Russo SM, Gelbart WM,
G3 (Bethesda, Md.)5(8)1737-49(2015 Jun)

Sequence finishing and mapping of Drosophila melanogaster heterochromatin.
Hoskins RA, Carlson JW, Kennedy C, Acevedo D, Evans-Holm M, Frise E, Wan KH, Park S, Mendez-Lago M, Rossi F, Villasante A, Dimitri P, Karpen GH, Celniker SE
Science (New York, N.Y.)316(5831)1625-8(2007 Jun)

The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
Smith CD, Shu S, Mungall CJ, Karpen GH
Science (New York, N.Y.)316(5831)1586-91(2007 Jun)

Combined evidence annotation of transposable elements in genome sequences.
Quesneville H, Bergman CM, Andrieu O, Autard D, Nouaud D, Ashburner M, Anxolabehere D
PLoS computational biology1(2)166-75(2005 Jul)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following st gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the st cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OFa18708	NM_079384.5 Latest version!	Drosophila melanogaster scarlet (st), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	12-14	$426.30 $609.00

ORF Online Only Promotion

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

st ( NM_079384.5 ) cDNA ORF clone, Drosophila melanogaster(fruit fly) -> NP_524108.1 Drosophila melanogaster scarlet (st), mRNA.

Price & Availability↑

CloneID	OFa18708
Clone ID Related Accession (Same CDS sequence)	NM_079384.5
Accession Version	NM_079384.5 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 2001bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-04-24
Organism	Drosophila melanogaster(fruit fly)
Product	scarlet
Comment	Comment: REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_037436). On Jul 15, 2014 this sequence version replaced NM_079384.4. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.26 URL :: http://flybase.org ##Genome-Annotation-Data-END##

ATGTCGGATT CAGATAGCAA GCGGATCGAT GTGGAGGCCC CGGAGCGAGT GGAGCAGCAC 
GAATTGCAGG TGATGCCGGT GGGCAGCACC ATTGAGGTGC CCAGCTTGGA CAGCACACCC 
AAGCTATCGA AACGGAACAG TTCGGAGAGA AGTCTACCGC TCAGGAGCTA CAGCAAATGG 
TCGCCCACGG AGCAGGGAGC CACTCTGGTG TGGCGGGATC TCTGCGTCTA TACCAATGTC 
GGTGGTTCCG GTCAGCGGAT GAAGCGGATC ATCAACAACT CAACGGGGGC CATTCAACCG 
GGCACTCTGA TGGCTCTAAT GGGCTCGAGT GGCTCTGGGA AAACAACACT CATGTCAACG 
CTCGCCTTTC GACAGCCGGC CGGGACCGTC GTTCAAGGCG ACATTCTGAT AAACGGCCGG 
CGCATTGGGC CCTTCATGCA TCGCATCAGC GGCTACGTCT ACCAGGATGA CCTCTTCCTC 
GGATCGCTGA CTGTTCTCGA GCACTTGAAC TTTATGGCAC ATCTCCGCCT GGATCGTCGG 
GTGTCGAAAG AGGAGCGTCG CCTCATCATT AAAGAGCTGC TGGAGCGAAC CGGCCTTCTT 
TCGGCGGCGC AAACTCGAAT TGGTAGTGGC GATGACAAGA AGGTCCTTTC GGGGGGAGAA 
CGCAAACGAT TGGCATTCGC CGTGGAGCTG CTGAACAATC CGGTGATTCT ATTTTGCGAT 
GAGCCTACCA CGGGACTGGA CTCATACAGT GCCCAGCAGC TGGTGGCCAC GTTGTACGAG 
TTGGCCCAAA AGGGCACCAC CATACTGTGC ACCATCCATC AGCCGAGTTC GCAGCTCTTC 
GATAACTTTA ACAACGTAAT GTTGCTGGCC GATGGGCGAG TAGCCTTTAC GGGATCACCT 
CAGCATGCGC TTAGTTTCTT TGCGAATCAT GGATACTACT GCCCGGAGGC CTACAATCCG 
GCAGATTTCC TAATTGGTGT CCTGGCGACC GATCCTGGCT ATGAGCAGGC CTCGCAGAGA 
TCGGCTCAAC ACCTTTGTGA TCAGTTTGCC GTCAGCTCGG CGGCCAAGCA GCGGGATATG 
CTGGTTAATC TGGAGATTCA CATGGCCCAG TCAGGCAACT TTCCCTTCGA CACGGAGGTG 
GAGTCCTTCA GGGGCGTGGC GTGGTACAAG CGCTTCCACG TAGTGTGGCT AAGGGCATCG 
CTGACGCTGC TAAGGGATCC CACGATTCAA TGGTTGCGGT TCATTCAAAA GATCGCAATG 
GCATTTATTA TCGGTGCCTG TTTTGCCGGA ACCACGGAAC CCTCCCAGTT GGGCGTACAG 
GCTGTTCAGG GAGCACTTTT CATCATGATA TCGGAGAACA CCTACCATCC CATGTACTCC 
GTGCTGAATC TCTTCCCGCA GGGATTTCCT CTGTTCATGC GGGAAACCCG ATCCGGACTC 
TACTCCACGG GACAATATTA TGCGGCCAAT ATACTGGCTT TGCTGCCTGG CATGATAATT 
GAGCCCCTGA TATTCGTCAT AATCTGCTAC TGGCTGACGG GTCTGAGATC CACCTTTTAT 
GCCTTCGGAG TGACTGCCAT GTGTGTGGTG CTGGTGATGA ATGTGGCCAC AGCCTGCGGT 
TGCTTCTTTT CCACGGCCTT TAATTCGGTG CCGCTGGCAA TGGCTTACTT GGTGCCCTTG 
GATTATATAT TCATGATCAC CTCGGGAATC TTTATACAAG TGAATTCGCT ACCAGTGGCG 
TTTTGGTGGA CACAATTTCT CTCATGGATG CTGTATGCCA ATGAGGCAAT GACCGCTGCT 
CAATGGTCTG GAGTGCAGAA TATAACCTGC TTTCAGGAGA GTGCCGACTT GCCGTGCTTT 
CACACGGGTC AGGATGTCCT GGACAAGTAC AGCTTCAACG AGAGCAATGT CTATCGGAAT 
TTACTGGCCA TGGTGGGTCT TTATTTCGGA TTCCATTTAC TGGGATATTA TTGCCTTTGG 
CGAAGGGCGC GGAAGCTGTA A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_524108.1
CDS	89..2089
Translation	MSDSDSKRIDVEAPERVEQHELQVMPVGSTIEVPSLDSTPKLSKRNSSERSLPLRSYSKWSPTEQGATLVWRDLCVYTNVGGSGQRMKRIINNSTGAIQPGTLMALMGSSGSGKTTLMSTLAFRQPAGTVVQGDILINGRRIGPFMHRISGYVYQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLIIKELLERTGLLSAAQTRIGSGDDKKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQQLVATLYELAQKGTTILCTIHQPSSQLFDNFNNVMLLADGRVAFTGSPQHALSFFANHGYYCPEAYNPADFLIGVLATDPGYEQASQRSAQHLCDQFAVSSAAKQRDMLVNLEIHMAQSGNFPFDTEVESFRGVAWYKRFHVVWLRASLTLLRDPTIQWLRFIQKIAMAFIIGACFAGTTEPSQLGVQAVQGALFIMISENTYHPMYSVLNLFPQGFPLFMRETRSGLYSTGQYYAANILALLPGMIIEPLIFVIICYWLTGLRSTFYAFGVTAMCVVLVMNVATACGCFFSTAFNSVPLAMAYLVPLDYIFMITSGIFIQVNSLPVAFWWTQFLSWMLYANEAMTAAQWSGVQNITCFQESADLPCFHTGQDVLDKYSFNESNVYRNLLAMVGLYFGFHLLGYYCLWRRARKL

Target ORF information:

RefSeq Version	NM_079384.5
Organism	Drosophila melanogaster(fruit fly)
Definition	Drosophila melanogaster scarlet (st), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_079384.5

ORF Insert Sequence:

ATGTCGGATT CAGATAGCAA GCGGATCGAT GTGGAGGCCC CGGAGCGAGT GGAGCAGCAC 
GAATTGCAGG TGATGCCGGT GGGCAGCACC ATTGAGGTGC CCAGCTTGGA CAGCACACCC 
AAGCTATCGA AACGGAACAG TTCGGAGAGA AGTCTACCGC TCAGGAGCTA CAGCAAATGG 
TCGCCCACGG AGCAGGGAGC CACTCTGGTG TGGCGGGATC TCTGCGTCTA TACCAATGTC 
GGTGGTTCCG GTCAGCGGAT GAAGCGGATC ATCAACAACT CAACGGGGGC CATTCAACCG 
GGCACTCTGA TGGCTCTAAT GGGCTCGAGT GGCTCTGGGA AAACAACACT CATGTCAACG 
CTCGCCTTTC GACAGCCGGC CGGGACCGTC GTTCAAGGCG ACATTCTGAT AAACGGCCGG 
CGCATTGGGC CCTTCATGCA TCGCATCAGC GGCTACGTCT ACCAGGATGA CCTCTTCCTC 
GGATCGCTGA CTGTTCTCGA GCACTTGAAC TTTATGGCAC ATCTCCGCCT GGATCGTCGG 
GTGTCGAAAG AGGAGCGTCG CCTCATCATT AAAGAGCTGC TGGAGCGAAC CGGCCTTCTT 
TCGGCGGCGC AAACTCGAAT TGGTAGTGGC GATGACAAGA AGGTCCTTTC GGGGGGAGAA 
CGCAAACGAT TGGCATTCGC CGTGGAGCTG CTGAACAATC CGGTGATTCT ATTTTGCGAT 
GAGCCTACCA CGGGACTGGA CTCATACAGT GCCCAGCAGC TGGTGGCCAC GTTGTACGAG 
TTGGCCCAAA AGGGCACCAC CATACTGTGC ACCATCCATC AGCCGAGTTC GCAGCTCTTC 
GATAACTTTA ACAACGTAAT GTTGCTGGCC GATGGGCGAG TAGCCTTTAC GGGATCACCT 
CAGCATGCGC TTAGTTTCTT TGCGAATCAT GGATACTACT GCCCGGAGGC CTACAATCCG 
GCAGATTTCC TAATTGGTGT CCTGGCGACC GATCCTGGCT ATGAGCAGGC CTCGCAGAGA 
TCGGCTCAAC ACCTTTGTGA TCAGTTTGCC GTCAGCTCGG CGGCCAAGCA GCGGGATATG 
CTGGTTAATC TGGAGATTCA CATGGCCCAG TCAGGCAACT TTCCCTTCGA CACGGAGGTG 
GAGTCCTTCA GGGGCGTGGC GTGGTACAAG CGCTTCCACG TAGTGTGGCT AAGGGCATCG 
CTGACGCTGC TAAGGGATCC CACGATTCAA TGGTTGCGGT TCATTCAAAA GATCGCAATG 
GCATTTATTA TCGGTGCCTG TTTTGCCGGA ACCACGGAAC CCTCCCAGTT GGGCGTACAG 
GCTGTTCAGG GAGCACTTTT CATCATGATA TCGGAGAACA CCTACCATCC CATGTACTCC 
GTGCTGAATC TCTTCCCGCA GGGATTTCCT CTGTTCATGC GGGAAACCCG ATCCGGACTC 
TACTCCACGG GACAATATTA TGCGGCCAAT ATACTGGCTT TGCTGCCTGG CATGATAATT 
GAGCCCCTGA TATTCGTCAT AATCTGCTAC TGGCTGACGG GTCTGAGATC CACCTTTTAT 
GCCTTCGGAG TGACTGCCAT GTGTGTGGTG CTGGTGATGA ATGTGGCCAC AGCCTGCGGT 
TGCTTCTTTT CCACGGCCTT TAATTCGGTG CCGCTGGCAA TGGCTTACTT GGTGCCCTTG 
GATTATATAT TCATGATCAC CTCGGGAATC TTTATACAAG TGAATTCGCT ACCAGTGGCG 
TTTTGGTGGA CACAATTTCT CTCATGGATG CTGTATGCCA ATGAGGCAAT GACCGCTGCT 
CAATGGTCTG GAGTGCAGAA TATAACCTGC TTTCAGGAGA GTGCCGACTT GCCGTGCTTT 
CACACGGGTC AGGATGTCCT GGACAAGTAC AGCTTCAACG AGAGCAATGT CTATCGGAAT 
TTACTGGCCA TGGTGGGTCT TTATTTCGGA TTCCATTTAC TGGGATATTA TTGCCTTTGG 
CGAAGGGCGC GGAAGCTGTA A

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
G3 (Bethesda, Md.)5(8)1721-36(2015 Jun)
Matthews BB,Dos Santos G,Crosby MA,Emmert DB,St Pierre SE,Gramates LS,Zhou P,Schroeder AJ,Falls K,Strelets V,Russo SM,Gelbart WM,

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
G3 (Bethesda, Md.)5(8)1737-49(2015 Jun)
Crosby MA,Gramates LS,Dos Santos G,Matthews BB,St Pierre SE,Zhou P,Schroeder AJ,Falls K,Emmert DB,Russo SM,Gelbart WM,

Sequence finishing and mapping of Drosophila melanogaster heterochromatin.
Science (New York, N.Y.)316(5831)1625-8(2007 Jun)
Hoskins RA,Carlson JW,Kennedy C,Acevedo D,Evans-Holm M,Frise E,Wan KH,Park S,Mendez-Lago M,Rossi F,Villasante A,Dimitri P,Karpen GH,Celniker SE

The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
Science (New York, N.Y.)316(5831)1586-91(2007 Jun)
Smith CD,Shu S,Mungall CJ,Karpen GH

Combined evidence annotation of transposable elements in genome sequences.
PLoS computational biology1(2)166-75(2005 Jul)
Quesneville H,Bergman CM,Andrieu O,Autard D,Nouaud D,Ashburner M,Anxolabehere D

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st cDNA ORF clone, Drosophila melanogaster(fruit fly)

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Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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