Gene Symbol | SS18 |
Entrez Gene ID | 421085 |
Full Name | SS18, nBAF chromatin remodeling complex subunit |
General protein information |
|
Gene Type | protein-coding |
Organism | Gallus gallus(chicken) |
ORF » Species Summary » Gallus gallus » SS18 cDNA ORF clone
gRNAs
Gene Symbol | SS18 |
Entrez Gene ID | 421085 |
Full Name | SS18, nBAF chromatin remodeling complex subunit |
General protein information |
|
Gene Type | protein-coding |
Organism | Gallus gallus(chicken) |
mRNA | Protein | Name |
---|---|---|
XM_015277943.1 | XP_015133429.1 | protein SSXT isoform X1 |
NM_001079479.2 | NP_001072947.1 | protein SSXT isoform 2 |
XM_015277943.2 | XP_015133429.1 | protein SSXT isoform X1 |
XM_015277944.2 | XP_015133430.1 | protein SSXT isoform X2 |
XM_015277944.1 | XP_015133430.1 | protein SSXT isoform X2 |
NM_001278150.1 | NP_001265079.1 | protein SSXT isoform 1 |
Homo sapiens (human) | SS18 | NP_001007560.1 |
Mus musculus (house mouse) | Ss18 | NP_033306.2 |
Gallus gallus (chicken) | SS18 | NP_001265079.1 |
Danio rerio (zebrafish) | ss18 | NP_956038.1 |
Canis lupus familiaris (dog) | SS18 | XP_537295.3 |
Rattus norvegicus (Norway rat) | Ss18 | NP_001094370.1 |
Xenopus tropicalis (tropical clawed frog) | ss18 | NP_001072937.1 |
Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis.
Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P, Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci P, Hayashizaki Y, Buerstedde JM
Genome biology6(1)R6(2005)
A comprehensive collection of chicken cDNAs.
Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong WT, Tickle C, Brown WR, Wilson SA, Hubbard SJ
Current biology : CB12(22)1965-9(2002 Nov)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following SS18 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the SS18 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OGa25274 | |
Clone ID Related Accession (Same CDS sequence) | NM_001278150.1 | |
Accession Version | NM_001278150.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1257bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-05-20 | |
Organism | Gallus gallus(chicken) | |
Product | protein SSXT isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AJ719476.1, BU281323.1, BU361592.1, CR352739.1 and BU220113.1. Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1). ##RefSeq-Attributes-START## inferred exon combination :: based on alignments, homology ##RefSeq-Attributes-END## COMPLETENESS: complete on the 3' end. |
1 | ATGTCGGTGG CGTTCGCGGC CCCCCGGCAG CGGGGGAAAG GCGAGATCAC GCCGGCCGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001265079.1 |
CDS | 73..1329 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGTCGGTGG CGTTCGCGGC CCCCCGGCAG CGGGGGAAAG GCGAGATCAC GCCGGCCGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OGa25285 | |
Clone ID Related Accession (Same CDS sequence) | NM_001079479.2 | |
Accession Version | NM_001079479.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1059bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-05-20 | |
Organism | Gallus gallus(chicken) | |
Product | protein SSXT isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AJ719476.1, CR352739.1 and BU220113.1. On May 11, 2013 this sequence version replaced NM_001079479.1. Transcript Variant: This variant (2) lacks two in-frame exons, compared to variant 1. The encoded isoform (2) is shorter than isoform 1. ##Evidence-Data-START## Transcript exon combination :: AJ719476.1 [ECO:0000332] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGTCGGTGG CGTTCGCGGC CCCCCGGCAG CGGGGGAAAG GCGAGATCAC GCCGGCCGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001072947.1 |
CDS | 73..1131 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGTCGGTGG CGTTCGCGGC CCCCCGGCAG CGGGGGAAAG GCGAGATCAC GCCGGCCGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OGa32484 | |
Clone ID Related Accession (Same CDS sequence) | XM_015277943.1 , XM_015277943.2 | |
Accession Version | XM_015277943.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1164bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-01-03 | |
Organism | Gallus gallus(chicken) | |
Product | protein SSXT isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003763686.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Gallus gallus Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCGGTGG CGTTCGCGGC CCCCCGGCAG CGGGGGAAAG GCGAGATCAC GCCGGCCGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_015133429.1 |
CDS | 1..1164 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGTCGGTGG CGTTCGCGGC CCCCCGGCAG CGGGGGAAAG GCGAGATCAC GCCGGCCGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OGa32484 | |
Clone ID Related Accession (Same CDS sequence) | XM_015277943.1 , XM_015277943.2 | |
Accession Version | XM_015277943.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1164bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-05-16 | |
Organism | Gallus gallus(chicken) | |
Product | protein SSXT isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_006089.5) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On May 17, 2018 this sequence version replaced XM_015277943.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCGGTGG CGTTCGCGGC CCCCCGGCAG CGGGGGAAAG GCGAGATCAC GCCGGCCGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_015133429.1 |
CDS | 84..1247 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGTCGGTGG CGTTCGCGGC CCCCCGGCAG CGGGGGAAAG GCGAGATCAC GCCGGCCGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OGa32485 | |
Clone ID Related Accession (Same CDS sequence) | XM_015277944.2 , XM_015277944.1 | |
Accession Version | XM_015277944.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1035bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-05-16 | |
Organism | Gallus gallus(chicken) | |
Product | protein SSXT isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_006089.5) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On May 17, 2018 this sequence version replaced XM_015277944.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCTCTCAC CACCCACACA GAATATGCCT ATGGGTCCAG GAGGGATGAG TCAGAGCGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_015133430.1 |
CDS | 142..1176 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCTCTCAC CACCCACACA GAATATGCCT ATGGGTCCAG GAGGGATGAG TCAGAGCGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OGa32485 | |
Clone ID Related Accession (Same CDS sequence) | XM_015277944.2 , XM_015277944.1 | |
Accession Version | XM_015277944.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1035bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-01-03 | |
Organism | Gallus gallus(chicken) | |
Product | protein SSXT isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003763686.2) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Gallus gallus Annotation Release 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCTCTCAC CACCCACACA GAATATGCCT ATGGGTCCAG GAGGGATGAG TCAGAGCGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_015133430.1 |
CDS | 92..1126 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGCTCTCAC CACCCACACA GAATATGCCT ATGGGTCCAG GAGGGATGAG TCAGAGCGGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. |
A comprehensive collection of chicken cDNAs. |