Gene Symbol |
SFR1 |
Entrez Gene ID |
770846 |
Full Name |
SWI5 dependent homologous recombination repair protein 1 |
Synonyms |
C10orf78,MEI5,MEIR5,bA373N18.1 |
General protein information |
- Preferred Names
SWI5 dependent homologous recombination repair protein 1
Names
swi5-dependent recombination DNA repair protein 1 homolog MEI5 meiotic recombination protein homolog MEI5 recombination repair protein homolog SWI5-dependent recombination repair 1 SWI5-dependent recombination repair protein 1 meiosis protein 5 homolog
|
Gene Type |
protein-coding |
Organism |
Gallus gallus(chicken) |
mRNA and Protein(s)
mRNA |
Protein |
Name |
XM_001234167.4 |
XP_001234168.2 |
swi5-dependent recombination DNA repair protein 1 homolog isoform X1 |
XM_001234167.5 |
XP_001234168.2 |
swi5-dependent recombination DNA repair protein 1 homolog isoform X1 |
NM_001305100.1 |
NP_001292029.1 |
swi5-dependent recombination DNA repair protein 1 homolog |
NM_001305101.1 |
NP_001292030.1 |
swi5-dependent recombination DNA repair protein 1 homolog |
Homo sapiens (human) |
SFR1 |
NP_001002759.1 |
Pan troglodytes (chimpanzee) |
SFR1 |
XP_003312845.1 |
|
LOC715145 |
XP_001114219.1 |
Xenopus tropicalis (tropical clawed frog) |
sfr1 |
XP_004915900.1 |
Canis lupus familiaris (dog) |
SFR1 |
XP_005637751.1 |
Mus musculus (house mouse) |
Sfr1 |
NP_080653.2 |
Gallus gallus (chicken) |
SFR1 |
XP_001234168.2 |
Bos taurus (cattle) |
SFR1 |
XP_003587924.1 |
Rattus norvegicus (Norway rat) |
Sfr1 |
NP_001041321.2 |
Danio rerio (zebrafish) |
sfr1 |
NP_001076329.1 |
Related articles in PubMed
An expressed sequence tag analysis of the chicken reproductive tract transcriptome.
Froman DP, Kirby JD, Rhoads DD
Poultry science85(8)1438-41(2006 Aug)
A comprehensive collection of chicken cDNAs.
Boardman PE, Sanz-Ezquerro J, Overton IM, Burt DW, Bosch E, Fong WT, Tickle C, Brown WR, Wilson SA, Hubbard SJ
Current biology : CB12(22)1965-9(2002 Nov)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following SFR1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the SFR1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID |
OGa28681 |
Clone ID Related Accession (Same CDS sequence) |
NM_001305100.1
, NM_001305101.1
|
Accession Version |
NM_001305100.1 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 669bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2019-08-05 |
Organism |
Gallus gallus(chicken) |
Product |
swi5-dependent recombination DNA repair protein 1 homolog |
Comment |
Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BU256709.1, DT657576.1, BU137346.1 and AADN05000306.1.
Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
Sequence Note: This RefSeq record was created from transcript and genomic sequence data because no single transcript from the same strain was available for the full length of the gene. The extent of this transcript is supported by transcript alignments.
##Evidence-Data-START##
CDS exon combination :: ERR2365562.124724.1, ERR2286007.63279.1 [ECO:0000331]
RNAseq introns :: single sample supports all introns SAMEA2201364, SAMEA3109053 [ECO:0000348]
##Evidence-Data-END##
|
1 61 121 181 241 301 361 421 481 541 601 661
| ATGGAGGAAG CAGCGTGTGG TAAATTGACG TCTTTGTGCC ATACACCAAA GGATTCTGGG ACAGCAGCTC CACAGAGGAC TAGTTCAGGA AAACAGCCAA TGAGTGCAAC TCTAAGGGAA CGATTAAGGA AAACAAGACG TTCATTTACT GCTAATTTTG CAGTGGCAAA GCGGCTCAAG GTAGACACTG AAGAAAAAGA CTGCACAGAT GTTGATAATA GGTGTCTGCC AAAGATAGGC ATGGATTGTT CCACATTACA GGATGGTTCT GAATGCCTGG AACAAAACTG CACTGTAAAT ACATATTTCA AAAGTCCATT ACAGGAAAAC AATCTCTGTG AATCAGCAGA GAATGTGGTA AGGGTTGATC TTGGTCAGCA GCAGTCCCTA GGAGAAAAAG TAAGGCTGAT GAAACAAGTG AAAGAGAAGG AAGAACTACT TCGAAGGCTC AAACTGGTCA AGATGTACCG ATCTAAGAAC AACCTGTCTG AACTGCAAGC TTTGATAGTG AAATGGAGAA GCAGTACCCA GCTGATGCTG TATGAGCTGC AGGCAGCCTT TTCTGCAGAT GGCAAGAAAG TGAGTCTCAG TCAGCTGATA GATACTTTTG GATTGGAAGA CCACTTATTA CATTACAGCA GAGCAGAAGA AGATTTTGTA GACACGTAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
NP_001292029.1 |
CDS | 373..1041 |
Translation | |
Target ORF information:
RefSeq Version | NM_001305100.1 |
Organism | Gallus gallus(chicken) |
Definition | Gallus gallus SWI5 dependent homologous recombination repair protein 1 (SFR1), transcript variant 1, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
NM_001305100.1 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661
| ATGGAGGAAG CAGCGTGTGG TAAATTGACG TCTTTGTGCC ATACACCAAA GGATTCTGGG ACAGCAGCTC CACAGAGGAC TAGTTCAGGA AAACAGCCAA TGAGTGCAAC TCTAAGGGAA CGATTAAGGA AAACAAGACG TTCATTTACT GCTAATTTTG CAGTGGCAAA GCGGCTCAAG GTAGACACTG AAGAAAAAGA CTGCACAGAT GTTGATAATA GGTGTCTGCC AAAGATAGGC ATGGATTGTT CCACATTACA GGATGGTTCT GAATGCCTGG AACAAAACTG CACTGTAAAT ACATATTTCA AAAGTCCATT ACAGGAAAAC AATCTCTGTG AATCAGCAGA GAATGTGGTA AGGGTTGATC TTGGTCAGCA GCAGTCCCTA GGAGAAAAAG TAAGGCTGAT GAAACAAGTG AAAGAGAAGG AAGAACTACT TCGAAGGCTC AAACTGGTCA AGATGTACCG ATCTAAGAAC AACCTGTCTG AACTGCAAGC TTTGATAGTG AAATGGAGAA GCAGTACCCA GCTGATGCTG TATGAGCTGC AGGCAGCCTT TTCTGCAGAT GGCAAGAAAG TGAGTCTCAG TCAGCTGATA GATACTTTTG GATTGGAAGA CCACTTATTA CATTACAGCA GAGCAGAAGA AGATTTTGTA GACACGTAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
OGa28681 |
Clone ID Related Accession (Same CDS sequence) |
NM_001305100.1
, NM_001305101.1
|
Accession Version |
NM_001305101.1 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 669bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2019-08-04 |
Organism |
Gallus gallus(chicken) |
Product |
swi5-dependent recombination DNA repair protein 1 homolog |
Comment |
Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BU256709.1, BU137346.1 and AADN05000306.1.
Transcript Variant: This variant (2) uses an alternate splice site in its 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
Sequence Note: This RefSeq record was created from transcript and genomic sequence data because no single transcript from the same strain was available for the full length of the gene. The extent of this transcript is supported by transcript alignments.
##Evidence-Data-START##
Transcript exon combination :: ERR2286007.11237.1, ERR2286007.31646.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns SAMEA2201361, SAMEA2201362 [ECO:0000348]
##Evidence-Data-END##
|
1 61 121 181 241 301 361 421 481 541 601 661
| ATGGAGGAAG CAGCGTGTGG TAAATTGACG TCTTTGTGCC ATACACCAAA GGATTCTGGG ACAGCAGCTC CACAGAGGAC TAGTTCAGGA AAACAGCCAA TGAGTGCAAC TCTAAGGGAA CGATTAAGGA AAACAAGACG TTCATTTACT GCTAATTTTG CAGTGGCAAA GCGGCTCAAG GTAGACACTG AAGAAAAAGA CTGCACAGAT GTTGATAATA GGTGTCTGCC AAAGATAGGC ATGGATTGTT CCACATTACA GGATGGTTCT GAATGCCTGG AACAAAACTG CACTGTAAAT ACATATTTCA AAAGTCCATT ACAGGAAAAC AATCTCTGTG AATCAGCAGA GAATGTGGTA AGGGTTGATC TTGGTCAGCA GCAGTCCCTA GGAGAAAAAG TAAGGCTGAT GAAACAAGTG AAAGAGAAGG AAGAACTACT TCGAAGGCTC AAACTGGTCA AGATGTACCG ATCTAAGAAC AACCTGTCTG AACTGCAAGC TTTGATAGTG AAATGGAGAA GCAGTACCCA GCTGATGCTG TATGAGCTGC AGGCAGCCTT TTCTGCAGAT GGCAAGAAAG TGAGTCTCAG TCAGCTGATA GATACTTTTG GATTGGAAGA CCACTTATTA CATTACAGCA GAGCAGAAGA AGATTTTGTA GACACGTAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
NP_001292030.1 |
CDS | 91..759 |
Translation | |
Target ORF information:
RefSeq Version | NM_001305101.1 |
Organism | Gallus gallus(chicken) |
Definition | Gallus gallus SWI5 dependent homologous recombination repair protein 1 (SFR1), transcript variant 2, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
NM_001305101.1 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661
| ATGGAGGAAG CAGCGTGTGG TAAATTGACG TCTTTGTGCC ATACACCAAA GGATTCTGGG ACAGCAGCTC CACAGAGGAC TAGTTCAGGA AAACAGCCAA TGAGTGCAAC TCTAAGGGAA CGATTAAGGA AAACAAGACG TTCATTTACT GCTAATTTTG CAGTGGCAAA GCGGCTCAAG GTAGACACTG AAGAAAAAGA CTGCACAGAT GTTGATAATA GGTGTCTGCC AAAGATAGGC ATGGATTGTT CCACATTACA GGATGGTTCT GAATGCCTGG AACAAAACTG CACTGTAAAT ACATATTTCA AAAGTCCATT ACAGGAAAAC AATCTCTGTG AATCAGCAGA GAATGTGGTA AGGGTTGATC TTGGTCAGCA GCAGTCCCTA GGAGAAAAAG TAAGGCTGAT GAAACAAGTG AAAGAGAAGG AAGAACTACT TCGAAGGCTC AAACTGGTCA AGATGTACCG ATCTAAGAAC AACCTGTCTG AACTGCAAGC TTTGATAGTG AAATGGAGAA GCAGTACCCA GCTGATGCTG TATGAGCTGC AGGCAGCCTT TTCTGCAGAT GGCAAGAAAG TGAGTCTCAG TCAGCTGATA GATACTTTTG GATTGGAAGA CCACTTATTA CATTACAGCA GAGCAGAAGA AGATTTTGTA GACACGTAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
OGa10456 |
Clone ID Related Accession (Same CDS sequence) |
XM_001234167.4
, XM_001234167.5
|
Accession Version |
XM_001234167.4 |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 669bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2016-01-03 |
Organism |
Gallus gallus(chicken) |
Product |
swi5-dependent recombination DNA repair protein 1 homolog isoform X1 |
Comment |
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NT_455898.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process
On Jan 4, 2016 this sequence version replaced XM_001234167.3.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Gallus gallus Annotation Release 103
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 6.5
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
|
1 61 121 181 241 301 361 421 481 541 601 661
| ATGGAGGAAG CAGCGTGTGG TAAATTGACG TCTTTGTGCC ATACACCAAA GGATTCTGGG ACAGCAGCTC CACAGAGGAC TAGTTCAGGA AAACAGCCAA TGAGTGCAAC TCTAAGGGAA CGATTAAGGA AAACAAGACG TTCATTCACT ACTAATTTTG CAGTGGCAAA GCGGCTCAAG GTAGACACTG AAGAAAAAGA CTGCACAGAT GTTGATAATA GGTGTCTGCC AAAGATAGGC ATGGATTGTT CCACATTACA GGATGGTTCT GAATGCCTGG AACAAAACTG CACTGTAAAT ACATATTTCA AAAGTCCATT ACAGGAAAAC AATCTCTGTG AATCAGCAGA GAATGTGGTA AGGGTTGATC TTGGTCAGCA GCAGTCCCTA GGAGAAAAAG TGAGGCTGAT GAAACAAGTG AAAGAGAAGG AAGAACTACT TCGAAGGCTC AAACTGGTCA AGATGTACCG ATCTAAGAAC AACCTGTCTG AACTGCAAGC TTTGATAGTG AAATGGAGAA GCAGTACCCA GCTGATGCTG TATGAGCTGC AGGCAGCCTT TTCTGCAGAT GGCAAGAAAG TGAGTCTCAG TCAGCTGATA GATACTTTTG GATTGGAAGA CCACTTATTA CATTACAGCA GAGCAGAAGA AGATTTTGTA GACACATAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
XP_001234168.2 |
CDS | 158..826 |
Translation | |
Target ORF information:
RefSeq Version | XM_001234167.4 |
Organism | Gallus gallus(chicken) |
Definition | Gallus gallus SWI5-dependent recombination repair 1 (SFR1), transcript variant X1, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
XM_001234167.4 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661
| ATGGAGGAAG CAGCGTGTGG TAAATTGACG TCTTTGTGCC ATACACCAAA GGATTCTGGG ACAGCAGCTC CACAGAGGAC TAGTTCAGGA AAACAGCCAA TGAGTGCAAC TCTAAGGGAA CGATTAAGGA AAACAAGACG TTCATTCACT ACTAATTTTG CAGTGGCAAA GCGGCTCAAG GTAGACACTG AAGAAAAAGA CTGCACAGAT GTTGATAATA GGTGTCTGCC AAAGATAGGC ATGGATTGTT CCACATTACA GGATGGTTCT GAATGCCTGG AACAAAACTG CACTGTAAAT ACATATTTCA AAAGTCCATT ACAGGAAAAC AATCTCTGTG AATCAGCAGA GAATGTGGTA AGGGTTGATC TTGGTCAGCA GCAGTCCCTA GGAGAAAAAG TGAGGCTGAT GAAACAAGTG AAAGAGAAGG AAGAACTACT TCGAAGGCTC AAACTGGTCA AGATGTACCG ATCTAAGAAC AACCTGTCTG AACTGCAAGC TTTGATAGTG AAATGGAGAA GCAGTACCCA GCTGATGCTG TATGAGCTGC AGGCAGCCTT TTCTGCAGAT GGCAAGAAAG TGAGTCTCAG TCAGCTGATA GATACTTTTG GATTGGAAGA CCACTTATTA CATTACAGCA GAGCAGAAGA AGATTTTGTA GACACATAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
OGa10456 |
Clone ID Related Accession (Same CDS sequence) |
XM_001234167.4
, XM_001234167.5
|
Accession Version |
XM_001234167.5 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 669bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2018-05-16 |
Organism |
Gallus gallus(chicken) |
Product |
swi5-dependent recombination DNA repair protein 1 homolog isoform X1 |
Comment |
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_006093.5) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process
On May 17, 2018 this sequence version replaced XM_001234167.4.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Gallus gallus Annotation Release 104
Annotation Version :: 104
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 8.0
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
|
1 61 121 181 241 301 361 421 481 541 601 661
| ATGGAGGAAG CAGCGTGTGG TAAATTGACG TCTTTGTGCC ATACACCAAA GGATTCTGGG ACAGCAGCTC CACAGAGGAC TAGTTCAGGA AAACAGCCAA TGAGTGCAAC TCTAAGGGAA CGATTAAGGA AAACAAGACG TTCATTCACT ACTAATTTTG CAGTGGCAAA GCGGCTCAAG GTAGACACTG AAGAAAAAGA CTGCACAGAT GTTGATAATA GGTGTCTGCC AAAGATAGGC ATGGATTGTT CCACATTACA GGATGGTTCT GAATGCCTGG AACAAAACTG CACTGTAAAT ACATATTTCA AAAGTCCATT ACAGGAAAAC AATCTCTGTG AATCAGCAGA GAATGTGGTA AGGGTTGATC TTGGTCAGCA GCAGTCCCTA GGAGAAAAAG TGAGGCTGAT GAAACAAGTG AAAGAGAAGG AAGAACTACT TCGAAGGCTC AAACTGGTCA AGATGTACCG ATCTAAGAAC AACCTGTCTG AACTGCAAGC TTTGATAGTG AAATGGAGAA GCAGTACCCA GCTGATGCTG TATGAGCTGC AGGCAGCCTT TTCTGCAGAT GGCAAGAAAG TGAGTCTCAG TCAGCTGATA GATACTTTTG GATTGGAAGA CCACTTATTA CATTACAGCA GAGCAGAAGA AGATTTTGTA GACACATAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
XP_001234168.2 |
CDS | 118..786 |
Translation | |
Target ORF information:
RefSeq Version | XM_001234167.5 |
Organism | Gallus gallus(chicken) |
Definition | Gallus gallus SWI5 dependent homologous recombination repair protein 1 (SFR1), transcript variant X1, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
XM_001234167.5 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661
| ATGGAGGAAG CAGCGTGTGG TAAATTGACG TCTTTGTGCC ATACACCAAA GGATTCTGGG ACAGCAGCTC CACAGAGGAC TAGTTCAGGA AAACAGCCAA TGAGTGCAAC TCTAAGGGAA CGATTAAGGA AAACAAGACG TTCATTCACT ACTAATTTTG CAGTGGCAAA GCGGCTCAAG GTAGACACTG AAGAAAAAGA CTGCACAGAT GTTGATAATA GGTGTCTGCC AAAGATAGGC ATGGATTGTT CCACATTACA GGATGGTTCT GAATGCCTGG AACAAAACTG CACTGTAAAT ACATATTTCA AAAGTCCATT ACAGGAAAAC AATCTCTGTG AATCAGCAGA GAATGTGGTA AGGGTTGATC TTGGTCAGCA GCAGTCCCTA GGAGAAAAAG TGAGGCTGAT GAAACAAGTG AAAGAGAAGG AAGAACTACT TCGAAGGCTC AAACTGGTCA AGATGTACCG ATCTAAGAAC AACCTGTCTG AACTGCAAGC TTTGATAGTG AAATGGAGAA GCAGTACCCA GCTGATGCTG TATGAGCTGC AGGCAGCCTT TTCTGCAGAT GGCAAGAAAG TGAGTCTCAG TCAGCTGATA GATACTTTTG GATTGGAAGA CCACTTATTA CATTACAGCA GAGCAGAAGA AGATTTTGTA GACACATAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.