Gene Symbol
PCDHA2
Entrez Gene ID
56146
Full Name
protocadherin alpha 2
Synonyms
PCDH-ALPHA2
General protein information
Preferred Namesprotocadherin alpha 2
Namesprotocadherin alpha-2 KIAA0345-like 12
Gene Type
protein-coding
Organism
Homo sapiens(human)
Genome
Chromosome: 5
Map Location: 5q31.3
Summary
This gene is a member of the protocadherin alpha gene cluster, one of three related gene clusters tandemly linked on chromosome five that demonstrate an unusual genomic organization similar to that of B-cell and T-cell receptor gene clusters. The alpha gene cluster is composed of 15 cadherin superfamily genes related to the mouse CNR genes and consists of 13 highly similar and 2 more distantly related coding sequences. The tandem array of 15 N-terminal exons, or variable exons, are followed by downstream C-terminal exons, or constant exons, which are shared by all genes in the cluster. The large, uninterrupted N-terminal exons each encode six cadherin ectodomains while the C-terminal exons encode the cytoplasmic domain. These neural cadherin-like cell adhesion proteins are integral plasma membrane proteins that most likely play a critical role in the establishment and function of specific cell-cell connections in the brain. Alternative splicing has been observed and additional variants have been suggested but their full-length nature has yet to be determined. [provided by RefSeq, Jul 2008].
Disorder MIM:
606308
mRNA and Protein(s)
mRNA
Protein
Name
NM_031496.1
NP_113684.1
protocadherin alpha-2 isoform 3 precursor
NM_018905.2
NP_061728.1
protocadherin alpha-2 isoform 1 precursor
NM_031495.2
NP_113683.1
protocadherin alpha-2 isoform 2 precursor
NM_031496.2
NP_113684.1
protocadherin alpha-2 isoform 3 precursor
NM_031495.1
NP_113683.1
protocadherin alpha-2 isoform 2 precursor
NM_018905.3
NP_061728.1
protocadherin alpha-2 isoform 1 precursor
LOC698874
XP_002804600.1
Gallus gallus (chicken)
PCDHA7
NP_001104607.1
Gallus gallus (chicken)
PCDHA9
NP_001104609.1
Gallus gallus (chicken)
PCDHA3
NP_001104603.1
Homo sapiens (human)
PCDHA2
NP_061728.1
Pan troglodytes (chimpanzee)
PCDHA2
NP_001076052.1
Mus musculus (house mouse)
Pcdha2
NP_932785.1
Gallus gallus (chicken)
PCDHA11
NP_001104598.1
Gallus gallus (chicken)
PCDHA4
NP_001104604.1
Gallus gallus (chicken)
PCDHA12
NP_001104599.1
Rattus norvegicus (Norway rat)
Pcdha2
NP_955798.1
Gallus gallus (chicken)
PCDHA2
NP_001104602.1
Gallus gallus (chicken)
PCDHA6
NP_001104606.1
Related articles in PubMed
Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
Fox CS, Liu Y, White CC, Feitosa M, Smith AV, Heard-Costa N, Lohman K, , , , Johnson AD, Foster MC, Greenawalt DM, Griffin P, Ding J, Newman AB, Tylavsky F, Miljkovic I, Kritchevsky SB, Launer L, Garcia M, Eiriksdottir G, Carr JJ, Gudnason V, Harris TB, Cupples LA, Borecki IB PLoS genetics8(5)e1002695(2012)
Systematic identification of SH3 domain-mediated human protein-protein interactions by peptide array target screening.
Wu C, Ma MH, Brown KR, Geisler M, Li L, Tzeng E, Jia CY, Jurisica I, Li SS Proteomics7(11)1775-85(2007 Jun)
Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides.
Gevaert K, Goethals M, Martens L, Van Damme J, Staes A, Thomas GR, Vandekerckhove J Nature biotechnology21(5)566-9(2003 May)
Comparative DNA sequence analysis of mouse and human protocadherin gene clusters.
Wu Q, Zhang T, Cheng JF, Kim Y, Grimwood J, Schmutz J, Dickson M, Noonan JP, Zhang MQ, Myers RM, Maniatis T Genome research11(3)389-404(2001 Mar)
Phylogenetic analysis of the cadherin superfamily allows identification of six major subfamilies besides several solitary members.
Nollet F, Kools P, van Roy F Journal of molecular biology299(3)551-72(2000 Jun)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following PCDHA2 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the PCDHA2 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+ /C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID
OHu29353
Clone ID Related Accession (Same CDS sequence)
NM_031496.1
, NM_031496.2
Accession Version
NM_031496.1
Documents for ORF clone product in default vector
Sequence Information
ORF Nucleotide Sequence (Length: 2427bp)
Protein sequence
SNP
Vector
pcDNA3.1+ /C-(K)DYK or customized vector
User Manual
Clone information
Clone Map
MSDS
Tag on pcDNA3.1+ /C-(K)DYK
C terminal DYKDDDDK tags
ORF Insert Method
CloneEZ™ Seamless cloning technology
Insert Structure
linear
Update Date
2019-02-15
Organism
Homo sapiens(human)
Product
protocadherin alpha-2 isoform 3 precursor
Comment
Comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from BC003126.1. On or before Aug 31, 2013 this sequence version replaced XM_005268491.1, XM_005278372.1.
Transcript Variant: This variant (3) splices the large, first exon into a unique exon contained within the intron between PCDHA3 and PCDHA4. The resulting isoform (3) has a shorter and distinct C-terminus compared to isoform 1.
##Evidence-Data-START##
Transcript exon combination :: BC003126.1 [ECO:0000332]
##Evidence-Data-END##
COMPLETENESS: complete on the 3' end.
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 2101 2161 2221 2281 2341 2401 ATGGCGTCTT CTATCAGAAG GGGCCGAGGG GCCTGGACAC GGCTGCTCTC GCTTCTGCTC CTCGCAGCCT GGGAGGTGGG GAGCGGCCAG CTCCGCTACT CCGTCCCCGA GGAGGCCAAA CACGGCACCT TCGTGGGCCG CATCGCGCAG GACCTGGGGC TGGAGCTGGA GGAGCTGGTG CCGCGCCTGT TCCGGGTGGC GTCCAAAAGA CACGGGGACC TTCTGGAGGT AAATCTGCAG AATGGCATTT TGTTTGTGAA TTCTCGGATC GACCGGGAGG AGCTGTGCGG GCGGAGCGCG GAATGTAGCA TCCACGTGGA GGTGATCGTG GACAGGCCGC TGCAGGTTTT CCATGTGGAA GTGGAGGTGA AGGACATTAA CGACAACCCG CCAATATTTC CAATGACAGT AAAGACTATC CGGTTTCCCG AATCAAGGCT GCTTGATTCT CGGTTTCCTC TAGAGGGAGC ATCTGATGCA GATATAGGAG TAAATGCTCT TCTCTCCTAC AAGCTCAGCT CCAGTGAGTT TTTCTTCCTA GATATACAGG CAAATGATGA ACTAAGCGAA TCTTTGTCTC TCGTGCTGGG GAAATCGCTG GACAGAGAGG AAACTGCTGA GGTTAATTTG TTACTGGTGG CTACTGATGG GGGCAAACCT GAGCTCACGG GCACCGTTCA AATACTTATT AAGGTATTAG ATGTAAATGA CAATGAACCA ACTTTTGCCC AATCAGTTTA CAAAGTAAAA TTGTTAGAGA ATACGGCAAA TGGGACCTTA GTGGTTAAGT TAAACGCTTC TGATGCAGAT GAAGGACCGA ACAGCGAGAT TGTGTATTCA CTCGGTAGTG ATGTGTCCTC CACTATACAG ACTAAGTTTA CCATAGATCC CATCTCAGGG GAAATCAGAA CTAAGGGAAA ATTAGATTAT GAAGAAGCAA AGTCCTACGA GATTCAGGTC ACTGCAACTG ACAAAGGAAC CCCTTCAATG TCAGGACATT GTAAAATTTC ATTAAAACTT GTGGACATCA ATGATAACAC ACCAGAAGTC TCAATAACGT CTCTCTCACT TCCCATCTCA GAGAACGCTT CCCTGGGCAC TGTCATTGCT CTCATCACGG TGTCGGATCG CGACTCTGGT ACGAATGGAC ATGTCACCTG CTCCCTGACG CCCCACGTCC CTTTCAAGCT GGTGTCCACC TTCAAGAATT ACTACTCGTT GGTGCTGGAC AGCGCCCTGG ACCGCGAGAG CGTGTCAGCC TATGAGCTGG TGGTGACCGC ACGGGACGGG GGCTCGCCTT CACTGTGGGC CACCACCAGC GTGTCCATCG AGGTGGCCGA CGTGAACGAC AACGCGCCGG CGTTCGCACA GCCTGAGTAC ACAGTATTCG TGAAGGAGAA CAACCCGCCG GGCTGCCACA TCTTCACGGT GTCAGCGTGG GATGCGGACG CGCAGGAGAA CGCGCTGGTG TCCTACTCGC TGGTGGAGCG GCGGGTGGGC GAGCGCGCGT TGTCGAGCTA CGTTTCGGTG CACGCGGAGA GCGGCAAGGT GTACGCGCTG CAGCCGCTGG ACCACGAGGA AGTGGAGCTG CTGCAGTTCC AGGTGAGCGC GCGGGATGCG GGCGTGCCGC CTCTGGGCAG CAACGTGACG CTGCAGGTGT TCGTGCTGGA CGAGAACGAC AACGCGCCGG CACTGTTGGC GCCTAGGGCT GGCACCGCTG CTGGCGCAGT GAGTGAGCTG GTGCCGTGGT CGGTGGGTGC AGGGCACGTG GTGGCGAAGG TGCGCGCAGT GGACGCTGAC TCAGGCTACA ACGCGTGGCT TTCGTACGAG CTTCAGCTGG GTACTGGCAG CGCTCGCATC CCGTTCCGCG TGGGGCTATA CACGGGTGAG ATCAGCACGA CACGTGCCCT AGACGAGGCT GACTCCCCTC GACACCGCCT ACTCGTGCTG GTGAAGGACC ACGGCGAACC AGCGTTGACA GCCACGGCCA CCGTGTTAGT GTCGTTGGTG GAAAGTGGCC AGGCACCCAA GGCCTCGTCG CGGGCGTGGG TGGGCGCCGC GGGCTCAGAG GCTACGCTGG TGGATGTCAA CGTGTACCTG ATCATCGCCA TCTGCGCGGT ATCCAGCCTG TTGGTGCTCA CGGTGCTGCT GTACACTGCG CTGCGGTGCT CGGTGCCACC CACCGAGGGT GCGCGCGCGC CAGGAAAGCC CACGCTGGTG TGCTCCAGCG CCGTGGGGAG CTGGTCTTAC TCGCAGCAGA GGCGGCAGAG GGTGTGCTCT GGGGAGGACC CCCCCAAGAC GGACCTCATG GCCTTCAGCC CTAGCTTATC TCAAGGTCCA GACTCCGCAG AAGAGAAACA GCTCTCAGAA TCAGAATACG TAGGAAAGAT ATGGAACTTC AATCTTCAAA TCCAGCTTGC CTCTTGA
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
RefSeq
NP_113684.1
CDS 107..2533
Translation
Target ORF information:
RefSeq Version NM_031496.1
Organism Homo sapiens(human)
Definition Homo sapiens protocadherin alpha 2 (PCDHA2), transcript variant 3, mRNA.
Target ORF information:
Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+ /C-(K)DYK
NM_031496.1
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 2101 2161 2221 2281 2341 2401 ATGGCGTCTT CTATCAGAAG GGGCCGAGGG GCCTGGACAC GGCTGCTCTC GCTTCTGCTC CTCGCAGCCT GGGAGGTGGG GAGCGGCCAG CTCCGCTACT CCGTCCCCGA GGAGGCCAAA CACGGCACCT TCGTGGGCCG CATCGCGCAG GACCTGGGGC TGGAGCTGGA GGAGCTGGTG CCGCGCCTGT TCCGGGTGGC GTCCAAAAGA CACGGGGACC TTCTGGAGGT AAATCTGCAG AATGGCATTT TGTTTGTGAA TTCTCGGATC GACCGGGAGG AGCTGTGCGG GCGGAGCGCG GAATGTAGCA TCCACGTGGA GGTGATCGTG GACAGGCCGC TGCAGGTTTT CCATGTGGAA GTGGAGGTGA AGGACATTAA CGACAACCCG CCAATATTTC CAATGACAGT AAAGACTATC CGGTTTCCCG AATCAAGGCT GCTTGATTCT CGGTTTCCTC TAGAGGGAGC ATCTGATGCA GATATAGGAG TAAATGCTCT TCTCTCCTAC AAGCTCAGCT CCAGTGAGTT TTTCTTCCTA GATATACAGG CAAATGATGA ACTAAGCGAA TCTTTGTCTC TCGTGCTGGG GAAATCGCTG GACAGAGAGG AAACTGCTGA GGTTAATTTG TTACTGGTGG CTACTGATGG GGGCAAACCT GAGCTCACGG GCACCGTTCA AATACTTATT AAGGTATTAG ATGTAAATGA CAATGAACCA ACTTTTGCCC AATCAGTTTA CAAAGTAAAA TTGTTAGAGA ATACGGCAAA TGGGACCTTA GTGGTTAAGT TAAACGCTTC TGATGCAGAT GAAGGACCGA ACAGCGAGAT TGTGTATTCA CTCGGTAGTG ATGTGTCCTC CACTATACAG ACTAAGTTTA CCATAGATCC CATCTCAGGG GAAATCAGAA CTAAGGGAAA ATTAGATTAT GAAGAAGCAA AGTCCTACGA GATTCAGGTC ACTGCAACTG ACAAAGGAAC CCCTTCAATG TCAGGACATT GTAAAATTTC ATTAAAACTT GTGGACATCA ATGATAACAC ACCAGAAGTC TCAATAACGT CTCTCTCACT TCCCATCTCA GAGAACGCTT CCCTGGGCAC TGTCATTGCT CTCATCACGG TGTCGGATCG CGACTCTGGT ACGAATGGAC ATGTCACCTG CTCCCTGACG CCCCACGTCC CTTTCAAGCT GGTGTCCACC TTCAAGAATT ACTACTCGTT GGTGCTGGAC AGCGCCCTGG ACCGCGAGAG CGTGTCAGCC TATGAGCTGG TGGTGACCGC ACGGGACGGG GGCTCGCCTT CACTGTGGGC CACCACCAGC GTGTCCATCG AGGTGGCCGA CGTGAACGAC AACGCGCCGG CGTTCGCACA GCCTGAGTAC ACAGTATTCG TGAAGGAGAA CAACCCGCCG GGCTGCCACA TCTTCACGGT GTCAGCGTGG GATGCGGACG CGCAGGAGAA CGCGCTGGTG TCCTACTCGC TGGTGGAGCG GCGGGTGGGC GAGCGCGCGT TGTCGAGCTA CGTTTCGGTG CACGCGGAGA GCGGCAAGGT GTACGCGCTG CAGCCGCTGG ACCACGAGGA AGTGGAGCTG CTGCAGTTCC AGGTGAGCGC GCGGGATGCG GGCGTGCCGC CTCTGGGCAG CAACGTGACG CTGCAGGTGT TCGTGCTGGA CGAGAACGAC AACGCGCCGG CACTGTTGGC GCCTAGGGCT GGCACCGCTG CTGGCGCAGT GAGTGAGCTG GTGCCGTGGT CGGTGGGTGC AGGGCACGTG GTGGCGAAGG TGCGCGCAGT GGACGCTGAC TCAGGCTACA ACGCGTGGCT TTCGTACGAG CTTCAGCTGG GTACTGGCAG CGCTCGCATC CCGTTCCGCG TGGGGCTATA CACGGGTGAG ATCAGCACGA CACGTGCCCT AGACGAGGCT GACTCCCCTC GACACCGCCT ACTCGTGCTG GTGAAGGACC ACGGCGAACC AGCGTTGACA GCCACGGCCA CCGTGTTAGT GTCGTTGGTG GAAAGTGGCC AGGCACCCAA GGCCTCGTCG CGGGCGTGGG TGGGCGCCGC GGGCTCAGAG GCTACGCTGG TGGATGTCAA CGTGTACCTG ATCATCGCCA TCTGCGCGGT ATCCAGCCTG TTGGTGCTCA CGGTGCTGCT GTACACTGCG CTGCGGTGCT CGGTGCCACC CACCGAGGGT GCGCGCGCGC CAGGAAAGCC CACGCTGGTG TGCTCCAGCG CCGTGGGGAG CTGGTCTTAC TCGCAGCAGA GGCGGCAGAG GGTGTGCTCT GGGGAGGACC CCCCCAAGAC GGACCTCATG GCCTTCAGCC CTAGCTTATC TCAAGGTCCA GACTCCGCAG AAGAGAAACA GCTCTCAGAA TCAGAATACG TAGGAAAGAT ATGGAACTTC AATCTTCAAA TCCAGCTTGC CTCTTGA
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
CloneID
OHu29353
Clone ID Related Accession (Same CDS sequence)
NM_031496.1
, NM_031496.2
Accession Version
NM_031496.2 Latest version!
Documents for ORF clone product in default vector
Sequence Information
ORF Nucleotide Sequence (Length: 2427bp)
Protein sequence
SNP
Vector
pcDNA3.1+ /C-(K)DYK or customized vector
User Manual
Clone information
Clone Map
MSDS
Tag on pcDNA3.1+ /C-(K)DYK
C terminal DYKDDDDK tags
ORF Insert Method
CloneEZ™ Seamless cloning technology
Insert Structure
linear
Update Date
2019-07-06
Organism
Homo sapiens(human)
Product
protocadherin alpha-2 isoform 3 precursor
Comment
Comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from AC005609.1 and BC003126.1. On May 31, 2019 this sequence version replaced NM_031496.1.
Transcript Variant: This variant (3) splices the large, first exon into a unique exon contained within the intron between PCDHA3 and PCDHA4. The resulting isoform (3) has a shorter and distinct C-terminus compared to isoform 1.
##Evidence-Data-START##
Transcript exon combination :: BC003126.1 [ECO:0000332]
##Evidence-Data-END##
COMPLETENESS: complete on the 3' end.
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 2101 2161 2221 2281 2341 2401 ATGGCGTCTT CTATCAGAAG GGGCCGAGGG GCCTGGACAC GGCTGCTCTC GCTTCTGCTC CTCGCAGCCT GGGAGGTGGG GAGCGGCCAG CTCCGCTACT CCGTCCCCGA GGAGGCCAAA CACGGCACCT TCGTGGGCCG CATCGCGCAG GACCTGGGGC TGGAGCTGGA GGAGCTGGTG CCGCGCCTGT TCCGGGTGGC GTCCAAAAGA CACGGGGACC TTCTGGAGGT AAATCTGCAG AATGGCATTT TGTTTGTGAA TTCTCGGATC GACCGGGAGG AGCTGTGCGG GCGGAGCGCG GAATGTAGCA TCCACGTGGA GGTGATCGTG GACAGGCCGC TGCAGGTTTT CCATGTGGAA GTGGAGGTGA AGGACATTAA CGACAACCCG CCAATATTTC CAATGACAGT AAAGACTATC CGGTTTCCCG AATCAAGGCT GCTTGATTCT CGGTTTCCTC TAGAGGGAGC ATCTGATGCA GATATAGGAG TAAATGCTCT TCTCTCCTAC AAGCTCAGCT CCAGTGAGTT TTTCTTCCTA GATATACAGG CAAATGATGA ACTAAGCGAA TCTTTGTCTC TCGTGCTGGG GAAATCGCTG GACAGAGAGG AAACTGCTGA GGTTAATTTG TTACTGGTGG CTACTGATGG GGGCAAACCT GAGCTCACGG GCACCGTTCA AATACTTATT AAGGTATTAG ATGTAAATGA CAATGAACCA ACTTTTGCCC AATCAGTTTA CAAAGTAAAA TTGTTAGAGA ATACGGCAAA TGGGACCTTA GTGGTTAAGT TAAACGCTTC TGATGCAGAT GAAGGACCGA ACAGCGAGAT TGTGTATTCA CTCGGTAGTG ATGTGTCCTC CACTATACAG ACTAAGTTTA CCATAGATCC CATCTCAGGG GAAATCAGAA CTAAGGGAAA ATTAGATTAT GAAGAAGCAA AGTCCTACGA GATTCAGGTC ACTGCAACTG ACAAAGGAAC CCCTTCAATG TCAGGACATT GTAAAATTTC ATTAAAACTT GTGGACATCA ATGATAACAC ACCAGAAGTC TCAATAACGT CTCTCTCACT TCCCATCTCA GAGAACGCTT CCCTGGGCAC TGTCATTGCT CTCATCACGG TGTCGGATCG CGACTCTGGT ACGAATGGAC ATGTCACCTG CTCCCTGACG CCCCACGTCC CTTTCAAGCT GGTGTCCACC TTCAAGAATT ACTACTCGTT GGTGCTGGAC AGCGCCCTGG ACCGCGAGAG CGTGTCAGCC TATGAGCTGG TGGTGACCGC ACGGGACGGG GGCTCGCCTT CACTGTGGGC CACCACCAGC GTGTCCATCG AGGTGGCCGA CGTGAACGAC AACGCGCCGG CGTTCGCACA GCCTGAGTAC ACAGTATTCG TGAAGGAGAA CAACCCGCCG GGCTGCCACA TCTTCACGGT GTCAGCGTGG GATGCGGACG CGCAGGAGAA CGCGCTGGTG TCCTACTCGC TGGTGGAGCG GCGGGTGGGC GAGCGCGCGT TGTCGAGCTA CGTTTCGGTG CACGCGGAGA GCGGCAAGGT GTACGCGCTG CAGCCGCTGG ACCACGAGGA AGTGGAGCTG CTGCAGTTCC AGGTGAGCGC GCGGGATGCG GGCGTGCCGC CTCTGGGCAG CAACGTGACG CTGCAGGTGT TCGTGCTGGA CGAGAACGAC AACGCGCCGG CACTGTTGGC GCCTAGGGCT GGCACCGCTG CTGGCGCAGT GAGTGAGCTG GTGCCGTGGT CGGTGGGTGC AGGGCACGTG GTGGCGAAGG TGCGCGCAGT GGACGCTGAC TCAGGCTACA ACGCGTGGCT TTCGTACGAG CTTCAGCTGG GTACTGGCAG CGCTCGCATC CCGTTCCGCG TGGGGCTATA CACGGGTGAG ATCAGCACGA CACGTGCCCT AGACGAGGCT GACTCCCCTC GACACCGCCT ACTCGTGCTG GTGAAGGACC ACGGCGAACC AGCGTTGACA GCCACGGCCA CCGTGTTAGT GTCGTTGGTG GAAAGTGGCC AGGCACCCAA GGCCTCGTCG CGGGCGTGGG TGGGCGCCGC GGGCTCAGAG GCTACGCTGG TGGATGTCAA CGTGTACCTG ATCATCGCCA TCTGCGCGGT ATCCAGCCTG TTGGTGCTCA CGGTGCTGCT GTACACTGCG CTGCGGTGCT CGGTGCCACC CACCGAGGGT GCGCGCGCGC CAGGAAAGCC CACGCTGGTG TGCTCCAGCG CCGTGGGGAG CTGGTCTTAC TCGCAGCAGA GGCGGCAGAG GGTGTGCTCT GGGGAGGACC CCCCCAAGAC GGACCTCATG GCCTTCAGCC CTAGCTTATC TCAAGGTCCA GACTCCGCAG AAGAGAAACA GCTCTCAGAA TCAGAATACG TAGGAAAGAT ATGGAACTTC AATCTTCAAA TCCAGCTTGC CTCTTGA
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
RefSeq
NP_113684.1
CDS 114..2540
Translation
Target ORF information:
RefSeq Version NM_031496.2
Organism Homo sapiens(human)
Definition Homo sapiens protocadherin alpha 2 (PCDHA2), transcript variant 3, mRNA.
Target ORF information:
Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+ /C-(K)DYK
NM_031496.2
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 2101 2161 2221 2281 2341 2401 ATGGCGTCTT CTATCAGAAG GGGCCGAGGG GCCTGGACAC GGCTGCTCTC GCTTCTGCTC CTCGCAGCCT GGGAGGTGGG GAGCGGCCAG CTCCGCTACT CCGTCCCCGA GGAGGCCAAA CACGGCACCT TCGTGGGCCG CATCGCGCAG GACCTGGGGC TGGAGCTGGA GGAGCTGGTG CCGCGCCTGT TCCGGGTGGC GTCCAAAAGA CACGGGGACC TTCTGGAGGT AAATCTGCAG AATGGCATTT TGTTTGTGAA TTCTCGGATC GACCGGGAGG AGCTGTGCGG GCGGAGCGCG GAATGTAGCA TCCACGTGGA GGTGATCGTG GACAGGCCGC TGCAGGTTTT CCATGTGGAA GTGGAGGTGA AGGACATTAA CGACAACCCG CCAATATTTC CAATGACAGT AAAGACTATC CGGTTTCCCG AATCAAGGCT GCTTGATTCT CGGTTTCCTC TAGAGGGAGC ATCTGATGCA GATATAGGAG TAAATGCTCT TCTCTCCTAC AAGCTCAGCT CCAGTGAGTT TTTCTTCCTA GATATACAGG CAAATGATGA ACTAAGCGAA TCTTTGTCTC TCGTGCTGGG GAAATCGCTG GACAGAGAGG AAACTGCTGA GGTTAATTTG TTACTGGTGG CTACTGATGG GGGCAAACCT GAGCTCACGG GCACCGTTCA AATACTTATT AAGGTATTAG ATGTAAATGA CAATGAACCA ACTTTTGCCC AATCAGTTTA CAAAGTAAAA TTGTTAGAGA ATACGGCAAA TGGGACCTTA GTGGTTAAGT TAAACGCTTC TGATGCAGAT GAAGGACCGA ACAGCGAGAT TGTGTATTCA CTCGGTAGTG ATGTGTCCTC CACTATACAG ACTAAGTTTA CCATAGATCC CATCTCAGGG GAAATCAGAA CTAAGGGAAA ATTAGATTAT GAAGAAGCAA AGTCCTACGA GATTCAGGTC ACTGCAACTG ACAAAGGAAC CCCTTCAATG TCAGGACATT GTAAAATTTC ATTAAAACTT GTGGACATCA ATGATAACAC ACCAGAAGTC TCAATAACGT CTCTCTCACT TCCCATCTCA GAGAACGCTT CCCTGGGCAC TGTCATTGCT CTCATCACGG TGTCGGATCG CGACTCTGGT ACGAATGGAC ATGTCACCTG CTCCCTGACG CCCCACGTCC CTTTCAAGCT GGTGTCCACC TTCAAGAATT ACTACTCGTT GGTGCTGGAC AGCGCCCTGG ACCGCGAGAG CGTGTCAGCC TATGAGCTGG TGGTGACCGC ACGGGACGGG GGCTCGCCTT CACTGTGGGC CACCACCAGC GTGTCCATCG AGGTGGCCGA CGTGAACGAC AACGCGCCGG CGTTCGCACA GCCTGAGTAC ACAGTATTCG TGAAGGAGAA CAACCCGCCG GGCTGCCACA TCTTCACGGT GTCAGCGTGG GATGCGGACG CGCAGGAGAA CGCGCTGGTG TCCTACTCGC TGGTGGAGCG GCGGGTGGGC GAGCGCGCGT TGTCGAGCTA CGTTTCGGTG CACGCGGAGA GCGGCAAGGT GTACGCGCTG CAGCCGCTGG ACCACGAGGA AGTGGAGCTG CTGCAGTTCC AGGTGAGCGC GCGGGATGCG GGCGTGCCGC CTCTGGGCAG CAACGTGACG CTGCAGGTGT TCGTGCTGGA CGAGAACGAC AACGCGCCGG CACTGTTGGC GCCTAGGGCT GGCACCGCTG CTGGCGCAGT GAGTGAGCTG GTGCCGTGGT CGGTGGGTGC AGGGCACGTG GTGGCGAAGG TGCGCGCAGT GGACGCTGAC TCAGGCTACA ACGCGTGGCT TTCGTACGAG CTTCAGCTGG GTACTGGCAG CGCTCGCATC CCGTTCCGCG TGGGGCTATA CACGGGTGAG ATCAGCACGA CACGTGCCCT AGACGAGGCT GACTCCCCTC GACACCGCCT ACTCGTGCTG GTGAAGGACC ACGGCGAACC AGCGTTGACA GCCACGGCCA CCGTGTTAGT GTCGTTGGTG GAAAGTGGCC AGGCACCCAA GGCCTCGTCG CGGGCGTGGG TGGGCGCCGC GGGCTCAGAG GCTACGCTGG TGGATGTCAA CGTGTACCTG ATCATCGCCA TCTGCGCGGT ATCCAGCCTG TTGGTGCTCA CGGTGCTGCT GTACACTGCG CTGCGGTGCT CGGTGCCACC CACCGAGGGT GCGCGCGCGC CAGGAAAGCC CACGCTGGTG TGCTCCAGCG CCGTGGGGAG CTGGTCTTAC TCGCAGCAGA GGCGGCAGAG GGTGTGCTCT GGGGAGGACC CCCCCAAGAC GGACCTCATG GCCTTCAGCC CTAGCTTATC TCAAGGTCCA GACTCCGCAG AAGAGAAACA GCTCTCAGAA TCAGAATACG TAGGAAAGAT ATGGAACTTC AATCTTCAAA TCCAGCTTGC CTCTTGA
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
CloneID
OHu00408
Clone ID Related Accession (Same CDS sequence)
NM_031495.2
, NM_031495.1
Accession Version
NM_031495.2 Latest version!
Documents for ORF clone product in default vector
Sequence Information
ORF Nucleotide Sequence (Length: 2475bp)
Protein sequence
SNP
Vector
pcDNA3.1+ /C-(K)DYK or customized vector
User Manual
Clone information
Clone Map
MSDS
Tag on pcDNA3.1+ /C-(K)DYK
C terminal DYKDDDDK tags
ORF Insert Method
CloneEZ™ Seamless cloning technology
Insert Structure
linear
Update Date
2019-07-06
Organism
Homo sapiens(human)
Product
protocadherin alpha-2 isoform 2 precursor
Comment
Comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from AC005609.1, BC003126.1 and AF152480.1. On Jun 1, 2019 this sequence version replaced NM_031495.1.
Transcript Variant: This variant (2) utilizes the large, first exon then continues into the downstream intron 1 sequence before terminating. This one-exon transcript encodes a shorter isoform (2), compared to isoform 1. This short variant is represented based on data in PMID:10380929.
##Evidence-Data-START##
Transcript is intronless :: AF152480.1, SRR1803611.86205.1 [ECO:0000345]
##Evidence-Data-END##
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 2101 2161 2221 2281 2341 2401 2461 ATGGCGTCTT CTATCAGAAG GGGCCGAGGG GCCTGGACAC GGCTGCTCTC GCTTCTGCTC CTCGCAGCCT GGGAGGTGGG GAGCGGCCAG CTCCGCTACT CCGTCCCCGA GGAGGCCAAA CACGGCACCT TCGTGGGCCG CATCGCGCAG GACCTGGGGC TGGAGCTGGA GGAGCTGGTG CCGCGCCTGT TCCGGGTGGC GTCCAAAAGA CACGGGGACC TTCTGGAGGT AAATCTGCAG AATGGCATTT TGTTTGTGAA TTCTCGGATC GACCGGGAGG AGCTGTGCGG GCGGAGCGCG GAATGTAGCA TCCACGTGGA GGTGATCGTG GACAGGCCGC TGCAGGTTTT CCATGTGGAA GTGGAGGTGA AGGACATTAA CGACAACCCG CCAATATTTC CAATGACAGT AAAGACTATC CGGTTTCCCG AATCAAGGCT GCTTGATTCT CGGTTTCCTC TAGAGGGAGC ATCTGATGCA GATATAGGAG TAAATGCTCT TCTCTCCTAC AAGCTCAGCT CCAGTGAGTT TTTCTTCCTA GATATACAGG CAAATGATGA ACTAAGCGAA TCTTTGTCTC TCGTGCTGGG GAAATCGCTG GACAGAGAGG AAACTGCTGA GGTTAATTTG TTACTGGTGG CTACTGATGG GGGCAAACCT GAGCTCACGG GCACCGTTCA AATACTTATT AAGGTATTAG ATGTAAATGA CAATGAACCA ACTTTTGCCC AATCAGTTTA CAAAGTAAAA TTGTTAGAGA ATACGGCAAA TGGGACCTTA GTGGTTAAGT TAAACGCTTC TGATGCAGAT GAAGGACCGA ACAGCGAGAT TGTGTATTCA CTCGGTAGTG ATGTGTCCTC CACTATACAG ACTAAGTTTA CCATAGATCC CATCTCAGGG GAAATCAGAA CTAAGGGAAA ATTAGATTAT GAAGAAGCAA AGTCCTACGA GATTCAGGTC ACTGCAACTG ACAAAGGAAC CCCTTCAATG TCAGGACATT GTAAAATTTC ATTAAAACTT GTGGACATCA ATGATAACAC ACCAGAAGTC TCAATAACGT CTCTCTCACT TCCCATCTCA GAGAACGCTT CCCTGGGCAC TGTCATTGCT CTCATCACGG TGTCGGATCG CGACTCTGGT ACGAATGGAC ATGTCACCTG CTCCCTGACG CCCCACGTCC CTTTCAAGCT GGTGTCCACC TTCAAGAATT ACTACTCGTT GGTGCTGGAC AGCGCCCTGG ACCGCGAGAG CGTGTCAGCC TATGAGCTGG TGGTGACCGC ACGGGACGGG GGCTCGCCTT CACTGTGGGC CACCACCAGC GTGTCCATCG AGGTGGCCGA CGTGAACGAC AACGCGCCGG CGTTCGCACA GCCTGAGTAC ACAGTATTCG TGAAGGAGAA CAACCCGCCG GGCTGCCACA TCTTCACGGT GTCAGCGTGG GATGCGGACG CGCAGGAGAA CGCGCTGGTG TCCTACTCGC TGGTGGAGCG GCGGGTGGGC GAGCGCGCGT TGTCGAGCTA CGTTTCGGTG CACGCGGAGA GCGGCAAGGT GTACGCGCTG CAGCCGCTGG ACCACGAGGA AGTGGAGCTG CTGCAGTTCC AGGTGAGCGC GCGGGATGCG GGCGTGCCGC CTCTGGGCAG CAACGTGACG CTGCAGGTGT TCGTGCTGGA CGAGAACGAC AACGCGCCGG CACTGTTGGC GCCTAGGGCT GGCACCGCTG CTGGCGCAGT GAGTGAGCTG GTGCCGTGGT CGGTGGGTGC AGGGCACGTG GTGGCGAAGG TGCGCGCAGT GGACGCTGAC TCAGGCTACA ACGCGTGGCT TTCGTACGAG CTTCAGCTGG GTACTGGCAG CGCTCGCATC CCGTTCCGCG TGGGGCTATA CACGGGTGAG ATCAGCACGA CACGTGCCCT AGACGAGGCT GACTCCCCTC GACACCGCCT ACTCGTGCTG GTGAAGGACC ACGGCGAACC AGCGTTGACA GCCACGGCCA CCGTGTTAGT GTCGTTGGTG GAAAGTGGCC AGGCACCCAA GGCCTCGTCG CGGGCGTGGG TGGGCGCCGC GGGCTCAGAG GCTACGCTGG TGGATGTCAA CGTGTACCTG ATCATCGCCA TCTGCGCGGT ATCCAGCCTG TTGGTGCTCA CGGTGCTGCT GTACACTGCG CTGCGGTGCT CGGTGCCACC CACCGAGGGT GCGCGCGCGC CAGGAAAGCC CACGCTGGTG TGCTCCAGCG CCGTGGGGAG CTGGTCTTAC TCGCAGCAGA GGCGGCAGAG GGTGTGCTCT GGGGAGGACC CCCCCAAGAC GGACCTCATG GCCTTCAGCC CTAGCTTATC TCAAGGTCCA GACTCCGCAG AAGAGAAACA GCTCTCAGAA TCAGAATACG TAGGAAAGGT GAGTCTTTTA CTTTTTCTTG CCAATTCTAA AATTGTTCTT TTTAAAAAAT TCTATATGAT TTCTACTAGT TATTTAGATT CATAG
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
RefSeq
NP_113683.1
CDS 114..2588
Translation
Target ORF information:
RefSeq Version NM_031495.2
Organism Homo sapiens(human)
Definition Homo sapiens protocadherin alpha 2 (PCDHA2), transcript variant 2, mRNA.
Target ORF information:
Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+ /C-(K)DYK
NM_031495.2
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 2101 2161 2221 2281 2341 2401 2461 ATGGCGTCTT CTATCAGAAG GGGCCGAGGG GCCTGGACAC GGCTGCTCTC GCTTCTGCTC CTCGCAGCCT GGGAGGTGGG GAGCGGCCAG CTCCGCTACT CCGTCCCCGA GGAGGCCAAA CACGGCACCT TCGTGGGCCG CATCGCGCAG GACCTGGGGC TGGAGCTGGA GGAGCTGGTG CCGCGCCTGT TCCGGGTGGC GTCCAAAAGA CACGGGGACC TTCTGGAGGT AAATCTGCAG AATGGCATTT TGTTTGTGAA TTCTCGGATC GACCGGGAGG AGCTGTGCGG GCGGAGCGCG GAATGTAGCA TCCACGTGGA GGTGATCGTG GACAGGCCGC TGCAGGTTTT CCATGTGGAA GTGGAGGTGA AGGACATTAA CGACAACCCG CCAATATTTC CAATGACAGT AAAGACTATC CGGTTTCCCG AATCAAGGCT GCTTGATTCT CGGTTTCCTC TAGAGGGAGC ATCTGATGCA GATATAGGAG TAAATGCTCT TCTCTCCTAC AAGCTCAGCT CCAGTGAGTT TTTCTTCCTA GATATACAGG CAAATGATGA ACTAAGCGAA TCTTTGTCTC TCGTGCTGGG GAAATCGCTG GACAGAGAGG AAACTGCTGA GGTTAATTTG TTACTGGTGG CTACTGATGG GGGCAAACCT GAGCTCACGG GCACCGTTCA AATACTTATT AAGGTATTAG ATGTAAATGA CAATGAACCA ACTTTTGCCC AATCAGTTTA CAAAGTAAAA TTGTTAGAGA ATACGGCAAA TGGGACCTTA GTGGTTAAGT TAAACGCTTC TGATGCAGAT GAAGGACCGA ACAGCGAGAT TGTGTATTCA CTCGGTAGTG ATGTGTCCTC CACTATACAG ACTAAGTTTA CCATAGATCC CATCTCAGGG GAAATCAGAA CTAAGGGAAA ATTAGATTAT GAAGAAGCAA AGTCCTACGA GATTCAGGTC ACTGCAACTG ACAAAGGAAC CCCTTCAATG TCAGGACATT GTAAAATTTC ATTAAAACTT GTGGACATCA ATGATAACAC ACCAGAAGTC TCAATAACGT CTCTCTCACT TCCCATCTCA GAGAACGCTT CCCTGGGCAC TGTCATTGCT CTCATCACGG TGTCGGATCG CGACTCTGGT ACGAATGGAC ATGTCACCTG CTCCCTGACG CCCCACGTCC CTTTCAAGCT GGTGTCCACC TTCAAGAATT ACTACTCGTT GGTGCTGGAC AGCGCCCTGG ACCGCGAGAG CGTGTCAGCC TATGAGCTGG TGGTGACCGC ACGGGACGGG GGCTCGCCTT CACTGTGGGC CACCACCAGC GTGTCCATCG AGGTGGCCGA CGTGAACGAC AACGCGCCGG CGTTCGCACA GCCTGAGTAC ACAGTATTCG TGAAGGAGAA CAACCCGCCG GGCTGCCACA TCTTCACGGT GTCAGCGTGG GATGCGGACG CGCAGGAGAA CGCGCTGGTG TCCTACTCGC TGGTGGAGCG GCGGGTGGGC GAGCGCGCGT TGTCGAGCTA CGTTTCGGTG CACGCGGAGA GCGGCAAGGT GTACGCGCTG CAGCCGCTGG ACCACGAGGA AGTGGAGCTG CTGCAGTTCC AGGTGAGCGC GCGGGATGCG GGCGTGCCGC CTCTGGGCAG CAACGTGACG CTGCAGGTGT TCGTGCTGGA CGAGAACGAC AACGCGCCGG CACTGTTGGC GCCTAGGGCT GGCACCGCTG CTGGCGCAGT GAGTGAGCTG GTGCCGTGGT CGGTGGGTGC AGGGCACGTG GTGGCGAAGG TGCGCGCAGT GGACGCTGAC TCAGGCTACA ACGCGTGGCT TTCGTACGAG CTTCAGCTGG GTACTGGCAG CGCTCGCATC CCGTTCCGCG TGGGGCTATA CACGGGTGAG ATCAGCACGA CACGTGCCCT AGACGAGGCT GACTCCCCTC GACACCGCCT ACTCGTGCTG GTGAAGGACC ACGGCGAACC AGCGTTGACA GCCACGGCCA CCGTGTTAGT GTCGTTGGTG GAAAGTGGCC AGGCACCCAA GGCCTCGTCG CGGGCGTGGG TGGGCGCCGC GGGCTCAGAG GCTACGCTGG TGGATGTCAA CGTGTACCTG ATCATCGCCA TCTGCGCGGT ATCCAGCCTG TTGGTGCTCA CGGTGCTGCT GTACACTGCG CTGCGGTGCT CGGTGCCACC CACCGAGGGT GCGCGCGCGC CAGGAAAGCC CACGCTGGTG TGCTCCAGCG CCGTGGGGAG CTGGTCTTAC TCGCAGCAGA GGCGGCAGAG GGTGTGCTCT GGGGAGGACC CCCCCAAGAC GGACCTCATG GCCTTCAGCC CTAGCTTATC TCAAGGTCCA GACTCCGCAG AAGAGAAACA GCTCTCAGAA TCAGAATACG TAGGAAAGGT GAGTCTTTTA CTTTTTCTTG CCAATTCTAA AATTGTTCTT TTTAAAAAAT TCTATATGAT TTCTACTAGT TATTTAGATT CATAG
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
CloneID
OHu00408
Clone ID Related Accession (Same CDS sequence)
NM_031495.2
, NM_031495.1
Accession Version
NM_031495.1
Documents for ORF clone product in default vector
Sequence Information
ORF Nucleotide Sequence (Length: 2475bp)
Protein sequence
SNP
Vector
pcDNA3.1+ /C-(K)DYK or customized vector
User Manual
Clone information
Clone Map
MSDS
Tag on pcDNA3.1+ /C-(K)DYK
C terminal DYKDDDDK tags
ORF Insert Method
CloneEZ™ Seamless cloning technology
Insert Structure
linear
Update Date
2019-02-15
Organism
Homo sapiens(human)
Product
protocadherin alpha-2 isoform 2 precursor
Comment
Comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from BC003126.1 and AF152480.1.
Transcript Variant: This variant (2) utilizes the large, first exon then continues into the downstream intron 1 sequence before terminating. This one-exon transcript encodes a shorter isoform (2), compared to isoform 1. This short variant is represented based on data in PMID:10380929.
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 2101 2161 2221 2281 2341 2401 2461 ATGGCGTCTT CTATCAGAAG GGGCCGAGGG GCCTGGACAC GGCTGCTCTC GCTTCTGCTC CTCGCAGCCT GGGAGGTGGG GAGCGGCCAG CTCCGCTACT CCGTCCCCGA GGAGGCCAAA CACGGCACCT TCGTGGGCCG CATCGCGCAG GACCTGGGGC TGGAGCTGGA GGAGCTGGTG CCGCGCCTGT TCCGGGTGGC GTCCAAAAGA CACGGGGACC TTCTGGAGGT AAATCTGCAG AATGGCATTT TGTTTGTGAA TTCTCGGATC GACCGGGAGG AGCTGTGCGG GCGGAGCGCG GAATGTAGCA TCCACGTGGA GGTGATCGTG GACAGGCCGC TGCAGGTTTT CCATGTGGAA GTGGAGGTGA AGGACATTAA CGACAACCCG CCAATATTTC CAATGACAGT AAAGACTATC CGGTTTCCCG AATCAAGGCT GCTTGATTCT CGGTTTCCTC TAGAGGGAGC ATCTGATGCA GATATAGGAG TAAATGCTCT TCTCTCCTAC AAGCTCAGCT CCAGTGAGTT TTTCTTCCTA GATATACAGG CAAATGATGA ACTAAGCGAA TCTTTGTCTC TCGTGCTGGG GAAATCGCTG GACAGAGAGG AAACTGCTGA GGTTAATTTG TTACTGGTGG CTACTGATGG GGGCAAACCT GAGCTCACGG GCACCGTTCA AATACTTATT AAGGTATTAG ATGTAAATGA CAATGAACCA ACTTTTGCCC AATCAGTTTA CAAAGTAAAA TTGTTAGAGA ATACGGCAAA TGGGACCTTA GTGGTTAAGT TAAACGCTTC TGATGCAGAT GAAGGACCGA ACAGCGAGAT TGTGTATTCA CTCGGTAGTG ATGTGTCCTC CACTATACAG ACTAAGTTTA CCATAGATCC CATCTCAGGG GAAATCAGAA CTAAGGGAAA ATTAGATTAT GAAGAAGCAA AGTCCTACGA GATTCAGGTC ACTGCAACTG ACAAAGGAAC CCCTTCAATG TCAGGACATT GTAAAATTTC ATTAAAACTT GTGGACATCA ATGATAACAC ACCAGAAGTC TCAATAACGT CTCTCTCACT TCCCATCTCA GAGAACGCTT CCCTGGGCAC TGTCATTGCT CTCATCACGG TGTCGGATCG CGACTCTGGT ACGAATGGAC ATGTCACCTG CTCCCTGACG CCCCACGTCC CTTTCAAGCT GGTGTCCACC TTCAAGAATT ACTACTCGTT GGTGCTGGAC AGCGCCCTGG ACCGCGAGAG CGTGTCAGCC TATGAGCTGG TGGTGACCGC ACGGGACGGG GGCTCGCCTT CACTGTGGGC CACCACCAGC GTGTCCATCG AGGTGGCCGA CGTGAACGAC AACGCGCCGG CGTTCGCACA GCCTGAGTAC ACAGTATTCG TGAAGGAGAA CAACCCGCCG GGCTGCCACA TCTTCACGGT GTCAGCGTGG GATGCGGACG CGCAGGAGAA CGCGCTGGTG TCCTACTCGC TGGTGGAGCG GCGGGTGGGC GAGCGCGCGT TGTCGAGCTA CGTTTCGGTG CACGCGGAGA GCGGCAAGGT GTACGCGCTG CAGCCGCTGG ACCACGAGGA AGTGGAGCTG CTGCAGTTCC AGGTGAGCGC GCGGGATGCG GGCGTGCCGC CTCTGGGCAG CAACGTGACG CTGCAGGTGT TCGTGCTGGA CGAGAACGAC AACGCGCCGG CACTGTTGGC GCCTAGGGCT GGCACCGCTG CTGGCGCAGT GAGTGAGCTG GTGCCGTGGT CGGTGGGTGC AGGGCACGTG GTGGCGAAGG TGCGCGCAGT GGACGCTGAC TCAGGCTACA ACGCGTGGCT TTCGTACGAG CTTCAGCTGG GTACTGGCAG CGCTCGCATC CCGTTCCGCG TGGGGCTATA CACGGGTGAG ATCAGCACGA CACGTGCCCT AGACGAGGCT GACTCCCCTC GACACCGCCT ACTCGTGCTG GTGAAGGACC ACGGCGAACC AGCGTTGACA GCCACGGCCA CCGTGTTAGT GTCGTTGGTG GAAAGTGGCC AGGCACCCAA GGCCTCGTCG CGGGCGTGGG TGGGCGCCGC GGGCTCAGAG GCTACGCTGG TGGATGTCAA CGTGTACCTG ATCATCGCCA TCTGCGCGGT ATCCAGCCTG TTGGTGCTCA CGGTGCTGCT GTACACTGCG CTGCGGTGCT CGGTGCCACC CACCGAGGGT GCGCGCGCGC CAGGAAAGCC CACGCTGGTG TGCTCCAGCG CCGTGGGGAG CTGGTCTTAC TCGCAGCAGA GGCGGCAGAG GGTGTGCTCT GGGGAGGACC CCCCCAAGAC GGACCTCATG GCCTTCAGCC CTAGCTTATC TCAAGGTCCA GACTCCGCAG AAGAGAAACA GCTCTCAGAA TCAGAATACG TAGGAAAGGT GAGTCTTTTA CTTTTTCTTG CCAATTCTAA AATTGTTCTT TTTAAAAAAT TCTATATGAT TTCTACTAGT TATTTAGATT CATAG
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
RefSeq
NP_113683.1
CDS 107..2581
Translation
Target ORF information:
RefSeq Version NM_031495.1
Organism Homo sapiens(human)
Definition Homo sapiens protocadherin alpha 2 (PCDHA2), transcript variant 2, mRNA.
Target ORF information:
Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+ /C-(K)DYK
NM_031495.1
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 2101 2161 2221 2281 2341 2401 2461 ATGGCGTCTT CTATCAGAAG GGGCCGAGGG GCCTGGACAC GGCTGCTCTC GCTTCTGCTC CTCGCAGCCT GGGAGGTGGG GAGCGGCCAG CTCCGCTACT CCGTCCCCGA GGAGGCCAAA CACGGCACCT TCGTGGGCCG CATCGCGCAG GACCTGGGGC TGGAGCTGGA GGAGCTGGTG CCGCGCCTGT TCCGGGTGGC GTCCAAAAGA CACGGGGACC TTCTGGAGGT AAATCTGCAG AATGGCATTT TGTTTGTGAA TTCTCGGATC GACCGGGAGG AGCTGTGCGG GCGGAGCGCG GAATGTAGCA TCCACGTGGA GGTGATCGTG GACAGGCCGC TGCAGGTTTT CCATGTGGAA GTGGAGGTGA AGGACATTAA CGACAACCCG CCAATATTTC CAATGACAGT AAAGACTATC CGGTTTCCCG AATCAAGGCT GCTTGATTCT CGGTTTCCTC TAGAGGGAGC ATCTGATGCA GATATAGGAG TAAATGCTCT TCTCTCCTAC AAGCTCAGCT CCAGTGAGTT TTTCTTCCTA GATATACAGG CAAATGATGA ACTAAGCGAA TCTTTGTCTC TCGTGCTGGG GAAATCGCTG GACAGAGAGG AAACTGCTGA GGTTAATTTG TTACTGGTGG CTACTGATGG GGGCAAACCT GAGCTCACGG GCACCGTTCA AATACTTATT AAGGTATTAG ATGTAAATGA CAATGAACCA ACTTTTGCCC AATCAGTTTA CAAAGTAAAA TTGTTAGAGA ATACGGCAAA TGGGACCTTA GTGGTTAAGT TAAACGCTTC TGATGCAGAT GAAGGACCGA ACAGCGAGAT TGTGTATTCA CTCGGTAGTG ATGTGTCCTC CACTATACAG ACTAAGTTTA CCATAGATCC CATCTCAGGG GAAATCAGAA CTAAGGGAAA ATTAGATTAT GAAGAAGCAA AGTCCTACGA GATTCAGGTC ACTGCAACTG ACAAAGGAAC CCCTTCAATG TCAGGACATT GTAAAATTTC ATTAAAACTT GTGGACATCA ATGATAACAC ACCAGAAGTC TCAATAACGT CTCTCTCACT TCCCATCTCA GAGAACGCTT CCCTGGGCAC TGTCATTGCT CTCATCACGG TGTCGGATCG CGACTCTGGT ACGAATGGAC ATGTCACCTG CTCCCTGACG CCCCACGTCC CTTTCAAGCT GGTGTCCACC TTCAAGAATT ACTACTCGTT GGTGCTGGAC AGCGCCCTGG ACCGCGAGAG CGTGTCAGCC TATGAGCTGG TGGTGACCGC ACGGGACGGG GGCTCGCCTT CACTGTGGGC CACCACCAGC GTGTCCATCG AGGTGGCCGA CGTGAACGAC AACGCGCCGG CGTTCGCACA GCCTGAGTAC ACAGTATTCG TGAAGGAGAA CAACCCGCCG GGCTGCCACA TCTTCACGGT GTCAGCGTGG GATGCGGACG CGCAGGAGAA CGCGCTGGTG TCCTACTCGC TGGTGGAGCG GCGGGTGGGC GAGCGCGCGT TGTCGAGCTA CGTTTCGGTG CACGCGGAGA GCGGCAAGGT GTACGCGCTG CAGCCGCTGG ACCACGAGGA AGTGGAGCTG CTGCAGTTCC AGGTGAGCGC GCGGGATGCG GGCGTGCCGC CTCTGGGCAG CAACGTGACG CTGCAGGTGT TCGTGCTGGA CGAGAACGAC AACGCGCCGG CACTGTTGGC GCCTAGGGCT GGCACCGCTG CTGGCGCAGT GAGTGAGCTG GTGCCGTGGT CGGTGGGTGC AGGGCACGTG GTGGCGAAGG TGCGCGCAGT GGACGCTGAC TCAGGCTACA ACGCGTGGCT TTCGTACGAG CTTCAGCTGG GTACTGGCAG CGCTCGCATC CCGTTCCGCG TGGGGCTATA CACGGGTGAG ATCAGCACGA CACGTGCCCT AGACGAGGCT GACTCCCCTC GACACCGCCT ACTCGTGCTG GTGAAGGACC ACGGCGAACC AGCGTTGACA GCCACGGCCA CCGTGTTAGT GTCGTTGGTG GAAAGTGGCC AGGCACCCAA GGCCTCGTCG CGGGCGTGGG TGGGCGCCGC GGGCTCAGAG GCTACGCTGG TGGATGTCAA CGTGTACCTG ATCATCGCCA TCTGCGCGGT ATCCAGCCTG TTGGTGCTCA CGGTGCTGCT GTACACTGCG CTGCGGTGCT CGGTGCCACC CACCGAGGGT GCGCGCGCGC CAGGAAAGCC CACGCTGGTG TGCTCCAGCG CCGTGGGGAG CTGGTCTTAC TCGCAGCAGA GGCGGCAGAG GGTGTGCTCT GGGGAGGACC CCCCCAAGAC GGACCTCATG GCCTTCAGCC CTAGCTTATC TCAAGGTCCA GACTCCGCAG AAGAGAAACA GCTCTCAGAA TCAGAATACG TAGGAAAGGT GAGTCTTTTA CTTTTTCTTG CCAATTCTAA AATTGTTCTT TTTAAAAAAT TCTATATGAT TTCTACTAGT TATTTAGATT CATAG
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
CloneID
OHu03143
Clone ID Related Accession (Same CDS sequence)
NM_018905.2
, NM_018905.3
Accession Version
NM_018905.2
Documents for ORF clone product in default vector
Sequence Information
ORF Nucleotide Sequence (Length: 2847bp)
Protein sequence
SNP
Vector
pcDNA3.1+ /C-(K)DYK or customized vector
User Manual
Clone information
Clone Map
MSDS
Tag on pcDNA3.1+ /C-(K)DYK
C terminal DYKDDDDK tags
ORF Insert Method
CloneEZ™ Seamless cloning technology
Insert Structure
linear
Update Date
2017-09-30
Organism
Homo sapiens(human)
Product
protocadherin alpha-2 isoform 1 precursor
Comment
Comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from BC003126.1 and AF152310.1. This sequence is a reference standard in the RefSeqGene project. On May 22, 2001 this sequence version replaced NM_018905.1.
Transcript Variant: This variant (1) includes the constant region exons and encodes the longest isoform (1).
##Evidence-Data-START##
Transcript exon combination :: AF152310.1, SRR1660809.11757.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns SAMEA2142670, SAMEA2144333 [ECO:0000348]
##Evidence-Data-END##
COMPLETENESS: complete on the 3' end.
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 2101 2161 2221 2281 2341 2401 2461 2521 2581 2641 2701 2761 2821 ATGGCGTCTT CTATCAGAAG GGGCCGAGGG GCCTGGACAC GGCTGCTCTC GCTTCTGCTC CTCGCAGCCT GGGAGGTGGG GAGCGGCCAG CTCCGCTACT CCGTCCCCGA GGAGGCCAAA CACGGCACCT TCGTGGGCCG CATCGCGCAG GACCTGGGGC TGGAGCTGGA GGAGCTGGTG CCGCGCCTGT TCCGGGTGGC GTCCAAAAGA CACGGGGACC TTCTGGAGGT AAATCTGCAG AATGGCATTT TGTTTGTGAA TTCTCGGATC GACCGGGAGG AGCTGTGCGG GCGGAGCGCG GAATGTAGCA TCCACGTGGA GGTGATCGTG GACAGGCCGC TGCAGGTTTT CCATGTGGAA GTGGAGGTGA AGGACATTAA CGACAACCCG CCAATATTTC CAATGACAGT AAAGACTATC CGGTTTCCCG AATCAAGGCT GCTTGATTCT CGGTTTCCTC TAGAGGGAGC ATCTGATGCA GATATAGGAG TAAATGCTCT TCTCTCCTAC AAGCTCAGCT CCAGTGAGTT TTTCTTCCTA GATATACAGG CAAATGATGA ACTAAGCGAA TCTTTGTCTC TCGTGCTGGG GAAATCGCTG GACAGAGAGG AAACTGCTGA GGTTAATTTG TTACTGGTGG CTACTGATGG GGGCAAACCT GAGCTCACGG GCACCGTTCA AATACTTATT AAGGTATTAG ATGTAAATGA CAATGAACCA ACTTTTGCCC AATCAGTTTA CAAAGTAAAA TTGTTAGAGA ATACGGCAAA TGGGACCTTA GTGGTTAAGT TAAACGCTTC TGATGCAGAT GAAGGACCGA ACAGCGAGAT TGTGTATTCA CTCGGTAGTG ATGTGTCCTC CACTATACAG ACTAAGTTTA CCATAGATCC CATCTCAGGG GAAATCAGAA CTAAGGGAAA ATTAGATTAT GAAGAAGCAA AGTCCTACGA GATTCAGGTC ACTGCAACTG ACAAAGGAAC CCCTTCAATG TCAGGACATT GTAAAATTTC ATTAAAACTT GTGGACATCA ATGATAACAC ACCAGAAGTC TCAATAACGT CTCTCTCACT TCCCATCTCA GAGAACGCTT CCCTGGGCAC TGTCATTGCT CTCATCACGG TGTCGGATCG CGACTCTGGT ACGAATGGAC ATGTCACCTG CTCCCTGACG CCCCACGTCC CTTTCAAGCT GGTGTCCACC TTCAAGAATT ACTACTCGTT GGTGCTGGAC AGCGCCCTGG ACCGCGAGAG CGTGTCAGCC TATGAGCTGG TGGTGACCGC ACGGGACGGG GGCTCGCCTT CACTGTGGGC CACCACCAGC GTGTCCATCG AGGTGGCCGA CGTGAACGAC AACGCGCCGG CGTTCGCACA GCCTGAGTAC ACAGTATTCG TGAAGGAGAA CAACCCGCCG GGCTGCCACA TCTTCACGGT GTCAGCGTGG GATGCGGACG CGCAGGAGAA CGCGCTGGTG TCCTACTCGC TGGTGGAGCG GCGGGTGGGC GAGCGCGCGT TGTCGAGCTA CGTTTCGGTG CACGCGGAGA GCGGCAAGGT GTACGCGCTG CAGCCGCTGG ACCACGAGGA AGTGGAGCTG CTGCAGTTCC AGGTGAGCGC GCGGGATGCG GGCGTGCCGC CTCTGGGCAG CAACGTGACG CTGCAGGTGT TCGTGCTGGA CGAGAACGAC AACGCGCCGG CACTGTTGGC GCCTAGGGCT GGCACCGCTG CTGGCGCAGT GAGTGAGCTG GTGCCGTGGT CGGTGGGTGC AGGGCACGTG GTGGCGAAGG TGCGCGCAGT GGACGCTGAC TCAGGCTACA ACGCGTGGCT TTCGTACGAG CTTCAGCTGG GTACTGGCAG CGCTCGCATC CCGTTCCGCG TGGGGCTATA CACGGGTGAG ATCAGCACGA CACGTGCCCT AGACGAGGCT GACTCCCCTC GACACCGCCT ACTCGTGCTG GTGAAGGACC ACGGCGAACC AGCGTTGACA GCCACGGCCA CCGTGTTAGT GTCGTTGGTG GAAAGTGGCC AGGCACCCAA GGCCTCGTCG CGGGCGTGGG TGGGCGCCGC GGGCTCAGAG GCTACGCTGG TGGATGTCAA CGTGTACCTG ATCATCGCCA TCTGCGCGGT ATCCAGCCTG TTGGTGCTCA CGGTGCTGCT GTACACTGCG CTGCGGTGCT CGGTGCCACC CACCGAGGGT GCGCGCGCGC CAGGAAAGCC CACGCTGGTG TGCTCCAGCG CCGTGGGGAG CTGGTCTTAC TCGCAGCAGA GGCGGCAGAG GGTGTGCTCT GGGGAGGACC CCCCCAAGAC GGACCTCATG GCCTTCAGCC CTAGCTTATC TCAAGGTCCA GACTCCGCAG AAGAGAAACA GCTCTCAGAA TCAGAATACG TAGGAAAGCC ACGACAGCCC AACCCTGACT GGCGTTACTC TGCCTCCCTG AGAGCAGGCA TGCACAGCTC TGTGCACCTA GAGGAGGCTG GCATTCTACG GGCTGGTCCA GGAGGGCCTG ATCAGCAGTG GCCAACAGTA TCCAGTGCAA CACCAGAACC AGAGGCAGGA GAAGTGTCCC CTCCAGTCGG TGCGGGTGTC AACAGCAACA GCTGGACCTT TAAATACGGA CCAGGCAACC CCAAACAATC CGGTCCCGGT GAGTTGCCCG ACAAATTCAT TATCCCAGGA TCTCCTGCAA TCATCTCCAT CCGGCAGGAG CCTACTAACA GCCAAATTGA CAAAAGTGAC TTCATAACCT TCGGCAAAAA GGAGGAGACC AAGAAAAAGA AGAAAAAGAA GAAGGGTAAC AAGACCCAGG AGAAAAAAGA GAAAGGGAAC AGCACGACTG ACAACAGTGA CCAGTGA
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
RefSeq
NP_061728.1
CDS 107..2953
Translation
Target ORF information:
RefSeq Version NM_018905.2
Organism Homo sapiens(human)
Definition Homo sapiens protocadherin alpha 2 (PCDHA2), transcript variant 1, mRNA.
Target ORF information:
Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+ /C-(K)DYK
NM_018905.2
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 2101 2161 2221 2281 2341 2401 2461 2521 2581 2641 2701 2761 2821 ATGGCGTCTT CTATCAGAAG GGGCCGAGGG GCCTGGACAC GGCTGCTCTC GCTTCTGCTC CTCGCAGCCT GGGAGGTGGG GAGCGGCCAG CTCCGCTACT CCGTCCCCGA GGAGGCCAAA CACGGCACCT TCGTGGGCCG CATCGCGCAG GACCTGGGGC TGGAGCTGGA GGAGCTGGTG CCGCGCCTGT TCCGGGTGGC GTCCAAAAGA CACGGGGACC TTCTGGAGGT AAATCTGCAG AATGGCATTT TGTTTGTGAA TTCTCGGATC GACCGGGAGG AGCTGTGCGG GCGGAGCGCG GAATGTAGCA TCCACGTGGA GGTGATCGTG GACAGGCCGC TGCAGGTTTT CCATGTGGAA GTGGAGGTGA AGGACATTAA CGACAACCCG CCAATATTTC CAATGACAGT AAAGACTATC CGGTTTCCCG AATCAAGGCT GCTTGATTCT CGGTTTCCTC TAGAGGGAGC ATCTGATGCA GATATAGGAG TAAATGCTCT TCTCTCCTAC AAGCTCAGCT CCAGTGAGTT TTTCTTCCTA GATATACAGG CAAATGATGA ACTAAGCGAA TCTTTGTCTC TCGTGCTGGG GAAATCGCTG GACAGAGAGG AAACTGCTGA GGTTAATTTG TTACTGGTGG CTACTGATGG GGGCAAACCT GAGCTCACGG GCACCGTTCA AATACTTATT AAGGTATTAG ATGTAAATGA CAATGAACCA ACTTTTGCCC AATCAGTTTA CAAAGTAAAA TTGTTAGAGA ATACGGCAAA TGGGACCTTA GTGGTTAAGT TAAACGCTTC TGATGCAGAT GAAGGACCGA ACAGCGAGAT TGTGTATTCA CTCGGTAGTG ATGTGTCCTC CACTATACAG ACTAAGTTTA CCATAGATCC CATCTCAGGG GAAATCAGAA CTAAGGGAAA ATTAGATTAT GAAGAAGCAA AGTCCTACGA GATTCAGGTC ACTGCAACTG ACAAAGGAAC CCCTTCAATG TCAGGACATT GTAAAATTTC ATTAAAACTT GTGGACATCA ATGATAACAC ACCAGAAGTC TCAATAACGT CTCTCTCACT TCCCATCTCA GAGAACGCTT CCCTGGGCAC TGTCATTGCT CTCATCACGG TGTCGGATCG CGACTCTGGT ACGAATGGAC ATGTCACCTG CTCCCTGACG CCCCACGTCC CTTTCAAGCT GGTGTCCACC TTCAAGAATT ACTACTCGTT GGTGCTGGAC AGCGCCCTGG ACCGCGAGAG CGTGTCAGCC TATGAGCTGG TGGTGACCGC ACGGGACGGG GGCTCGCCTT CACTGTGGGC CACCACCAGC GTGTCCATCG AGGTGGCCGA CGTGAACGAC AACGCGCCGG CGTTCGCACA GCCTGAGTAC ACAGTATTCG TGAAGGAGAA CAACCCGCCG GGCTGCCACA TCTTCACGGT GTCAGCGTGG GATGCGGACG CGCAGGAGAA CGCGCTGGTG TCCTACTCGC TGGTGGAGCG GCGGGTGGGC GAGCGCGCGT TGTCGAGCTA CGTTTCGGTG CACGCGGAGA GCGGCAAGGT GTACGCGCTG CAGCCGCTGG ACCACGAGGA AGTGGAGCTG CTGCAGTTCC AGGTGAGCGC GCGGGATGCG GGCGTGCCGC CTCTGGGCAG CAACGTGACG CTGCAGGTGT TCGTGCTGGA CGAGAACGAC AACGCGCCGG CACTGTTGGC GCCTAGGGCT GGCACCGCTG CTGGCGCAGT GAGTGAGCTG GTGCCGTGGT CGGTGGGTGC AGGGCACGTG GTGGCGAAGG TGCGCGCAGT GGACGCTGAC TCAGGCTACA ACGCGTGGCT TTCGTACGAG CTTCAGCTGG GTACTGGCAG CGCTCGCATC CCGTTCCGCG TGGGGCTATA CACGGGTGAG ATCAGCACGA CACGTGCCCT AGACGAGGCT GACTCCCCTC GACACCGCCT ACTCGTGCTG GTGAAGGACC ACGGCGAACC AGCGTTGACA GCCACGGCCA CCGTGTTAGT GTCGTTGGTG GAAAGTGGCC AGGCACCCAA GGCCTCGTCG CGGGCGTGGG TGGGCGCCGC GGGCTCAGAG GCTACGCTGG TGGATGTCAA CGTGTACCTG ATCATCGCCA TCTGCGCGGT ATCCAGCCTG TTGGTGCTCA CGGTGCTGCT GTACACTGCG CTGCGGTGCT CGGTGCCACC CACCGAGGGT GCGCGCGCGC CAGGAAAGCC CACGCTGGTG TGCTCCAGCG CCGTGGGGAG CTGGTCTTAC TCGCAGCAGA GGCGGCAGAG GGTGTGCTCT GGGGAGGACC CCCCCAAGAC GGACCTCATG GCCTTCAGCC CTAGCTTATC TCAAGGTCCA GACTCCGCAG AAGAGAAACA GCTCTCAGAA TCAGAATACG TAGGAAAGCC ACGACAGCCC AACCCTGACT GGCGTTACTC TGCCTCCCTG AGAGCAGGCA TGCACAGCTC TGTGCACCTA GAGGAGGCTG GCATTCTACG GGCTGGTCCA GGAGGGCCTG ATCAGCAGTG GCCAACAGTA TCCAGTGCAA CACCAGAACC AGAGGCAGGA GAAGTGTCCC CTCCAGTCGG TGCGGGTGTC AACAGCAACA GCTGGACCTT TAAATACGGA CCAGGCAACC CCAAACAATC CGGTCCCGGT GAGTTGCCCG ACAAATTCAT TATCCCAGGA TCTCCTGCAA TCATCTCCAT CCGGCAGGAG CCTACTAACA GCCAAATTGA CAAAAGTGAC TTCATAACCT TCGGCAAAAA GGAGGAGACC AAGAAAAAGA AGAAAAAGAA GAAGGGTAAC AAGACCCAGG AGAAAAAAGA GAAAGGGAAC AGCACGACTG ACAACAGTGA CCAGTGA
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
CloneID
OHu03143
Clone ID Related Accession (Same CDS sequence)
NM_018905.2
, NM_018905.3
Accession Version
NM_018905.3 Latest version!
Documents for ORF clone product in default vector
Sequence Information
ORF Nucleotide Sequence (Length: 2847bp)
Protein sequence
SNP
Vector
pcDNA3.1+ /C-(K)DYK or customized vector
User Manual
Clone information
Clone Map
MSDS
Tag on pcDNA3.1+ /C-(K)DYK
C terminal DYKDDDDK tags
ORF Insert Method
CloneEZ™ Seamless cloning technology
Insert Structure
linear
Update Date
2019-08-21
Organism
Homo sapiens(human)
Product
protocadherin alpha-2 isoform 1 precursor
Comment
Comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from AC005609.1, BC003126.1, AF152310.1 and AC010223.6. This sequence is a reference standard in the RefSeqGene project. On Nov 23, 2018 this sequence version replaced NM_018905.2.
Transcript Variant: This variant (1) includes the constant region exons and encodes the longest isoform (1).
##Evidence-Data-START##
Transcript exon combination :: SRR1660809.156560.1, AF152310.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns SAMEA2142670, SAMEA2144333 [ECO:0000348]
##Evidence-Data-END##
##RefSeq-Attributes-START##
MANE Ensembl match :: ENST00000526136.2/ ENSP00000431748.1
RefSeq Select criteria :: based on conservation, expression, longest protein
##RefSeq-Attributes-END##
COMPLETENESS: full length.
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 2101 2161 2221 2281 2341 2401 2461 2521 2581 2641 2701 2761 2821 ATGGCGTCTT CTATCAGAAG GGGCCGAGGG GCCTGGACAC GGCTGCTCTC GCTTCTGCTC CTCGCAGCCT GGGAGGTGGG GAGCGGCCAG CTCCGCTACT CCGTCCCCGA GGAGGCCAAA CACGGCACCT TCGTGGGCCG CATCGCGCAG GACCTGGGGC TGGAGCTGGA GGAGCTGGTG CCGCGCCTGT TCCGGGTGGC GTCCAAAAGA CACGGGGACC TTCTGGAGGT AAATCTGCAG AATGGCATTT TGTTTGTGAA TTCTCGGATC GACCGGGAGG AGCTGTGCGG GCGGAGCGCG GAATGTAGCA TCCACGTGGA GGTGATCGTG GACAGGCCGC TGCAGGTTTT CCATGTGGAA GTGGAGGTGA AGGACATTAA CGACAACCCG CCAATATTTC CAATGACAGT AAAGACTATC CGGTTTCCCG AATCAAGGCT GCTTGATTCT CGGTTTCCTC TAGAGGGAGC ATCTGATGCA GATATAGGAG TAAATGCTCT TCTCTCCTAC AAGCTCAGCT CCAGTGAGTT TTTCTTCCTA GATATACAGG CAAATGATGA ACTAAGCGAA TCTTTGTCTC TCGTGCTGGG GAAATCGCTG GACAGAGAGG AAACTGCTGA GGTTAATTTG TTACTGGTGG CTACTGATGG GGGCAAACCT GAGCTCACGG GCACCGTTCA AATACTTATT AAGGTATTAG ATGTAAATGA CAATGAACCA ACTTTTGCCC AATCAGTTTA CAAAGTAAAA TTGTTAGAGA ATACGGCAAA TGGGACCTTA GTGGTTAAGT TAAACGCTTC TGATGCAGAT GAAGGACCGA ACAGCGAGAT TGTGTATTCA CTCGGTAGTG ATGTGTCCTC CACTATACAG ACTAAGTTTA CCATAGATCC CATCTCAGGG GAAATCAGAA CTAAGGGAAA ATTAGATTAT GAAGAAGCAA AGTCCTACGA GATTCAGGTC ACTGCAACTG ACAAAGGAAC CCCTTCAATG TCAGGACATT GTAAAATTTC ATTAAAACTT GTGGACATCA ATGATAACAC ACCAGAAGTC TCAATAACGT CTCTCTCACT TCCCATCTCA GAGAACGCTT CCCTGGGCAC TGTCATTGCT CTCATCACGG TGTCGGATCG CGACTCTGGT ACGAATGGAC ATGTCACCTG CTCCCTGACG CCCCACGTCC CTTTCAAGCT GGTGTCCACC TTCAAGAATT ACTACTCGTT GGTGCTGGAC AGCGCCCTGG ACCGCGAGAG CGTGTCAGCC TATGAGCTGG TGGTGACCGC ACGGGACGGG GGCTCGCCTT CACTGTGGGC CACCACCAGC GTGTCCATCG AGGTGGCCGA CGTGAACGAC AACGCGCCGG CGTTCGCACA GCCTGAGTAC ACAGTATTCG TGAAGGAGAA CAACCCGCCG GGCTGCCACA TCTTCACGGT GTCAGCGTGG GATGCGGACG CGCAGGAGAA CGCGCTGGTG TCCTACTCGC TGGTGGAGCG GCGGGTGGGC GAGCGCGCGT TGTCGAGCTA CGTTTCGGTG CACGCGGAGA GCGGCAAGGT GTACGCGCTG CAGCCGCTGG ACCACGAGGA AGTGGAGCTG CTGCAGTTCC AGGTGAGCGC GCGGGATGCG GGCGTGCCGC CTCTGGGCAG CAACGTGACG CTGCAGGTGT TCGTGCTGGA CGAGAACGAC AACGCGCCGG CACTGTTGGC GCCTAGGGCT GGCACCGCTG CTGGCGCAGT GAGTGAGCTG GTGCCGTGGT CGGTGGGTGC AGGGCACGTG GTGGCGAAGG TGCGCGCAGT GGACGCTGAC TCAGGCTACA ACGCGTGGCT TTCGTACGAG CTTCAGCTGG GTACTGGCAG CGCTCGCATC CCGTTCCGCG TGGGGCTATA CACGGGTGAG ATCAGCACGA CACGTGCCCT AGACGAGGCT GACTCCCCTC GACACCGCCT ACTCGTGCTG GTGAAGGACC ACGGCGAACC AGCGTTGACA GCCACGGCCA CCGTGTTAGT GTCGTTGGTG GAAAGTGGCC AGGCACCCAA GGCCTCGTCG CGGGCGTGGG TGGGCGCCGC GGGCTCAGAG GCTACGCTGG TGGATGTCAA CGTGTACCTG ATCATCGCCA TCTGCGCGGT ATCCAGCCTG TTGGTGCTCA CGGTGCTGCT GTACACTGCG CTGCGGTGCT CGGTGCCACC CACCGAGGGT GCGCGCGCGC CAGGAAAGCC CACGCTGGTG TGCTCCAGCG CCGTGGGGAG CTGGTCTTAC TCGCAGCAGA GGCGGCAGAG GGTGTGCTCT GGGGAGGACC CCCCCAAGAC GGACCTCATG GCCTTCAGCC CTAGCTTATC TCAAGGTCCA GACTCCGCAG AAGAGAAACA GCTCTCAGAA TCAGAATACG TAGGAAAGCC ACGACAGCCC AACCCTGACT GGCGTTACTC TGCCTCCCTG AGAGCAGGCA TGCACAGCTC TGTGCACCTA GAGGAGGCTG GCATTCTACG GGCTGGTCCA GGAGGGCCTG ATCAGCAGTG GCCAACAGTA TCCAGTGCAA CACCAGAACC AGAGGCAGGA GAAGTGTCCC CTCCAGTCGG TGCGGGTGTC AACAGCAACA GCTGGACCTT TAAATACGGA CCAGGCAACC CCAAACAATC CGGTCCCGGT GAGTTGCCCG ACAAATTCAT TATCCCAGGA TCTCCTGCAA TCATCTCCAT CCGGCAGGAG CCTACTAACA GCCAAATTGA CAAAAGTGAC TTCATAACCT TCGGCAAAAA GGAGGAGACC AAGAAAAAGA AGAAAAAGAA GAAGGGTAAC AAGACCCAGG AGAAAAAAGA GAAAGGGAAC AGCACGACTG ACAACAGTGA CCAGTGA
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
RefSeq
NP_061728.1
CDS 114..2960
Translation
Target ORF information:
RefSeq Version NM_018905.3
Organism Homo sapiens(human)
Definition Homo sapiens protocadherin alpha 2 (PCDHA2), transcript variant 1, mRNA.
Target ORF information:
Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+ /C-(K)DYK
NM_018905.3
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 2101 2161 2221 2281 2341 2401 2461 2521 2581 2641 2701 2761 2821 ATGGCGTCTT CTATCAGAAG GGGCCGAGGG GCCTGGACAC GGCTGCTCTC GCTTCTGCTC CTCGCAGCCT GGGAGGTGGG GAGCGGCCAG CTCCGCTACT CCGTCCCCGA GGAGGCCAAA CACGGCACCT TCGTGGGCCG CATCGCGCAG GACCTGGGGC TGGAGCTGGA GGAGCTGGTG CCGCGCCTGT TCCGGGTGGC GTCCAAAAGA CACGGGGACC TTCTGGAGGT AAATCTGCAG AATGGCATTT TGTTTGTGAA TTCTCGGATC GACCGGGAGG AGCTGTGCGG GCGGAGCGCG GAATGTAGCA TCCACGTGGA GGTGATCGTG GACAGGCCGC TGCAGGTTTT CCATGTGGAA GTGGAGGTGA AGGACATTAA CGACAACCCG CCAATATTTC CAATGACAGT AAAGACTATC CGGTTTCCCG AATCAAGGCT GCTTGATTCT CGGTTTCCTC TAGAGGGAGC ATCTGATGCA GATATAGGAG TAAATGCTCT TCTCTCCTAC AAGCTCAGCT CCAGTGAGTT TTTCTTCCTA GATATACAGG CAAATGATGA ACTAAGCGAA TCTTTGTCTC TCGTGCTGGG GAAATCGCTG GACAGAGAGG AAACTGCTGA GGTTAATTTG TTACTGGTGG CTACTGATGG GGGCAAACCT GAGCTCACGG GCACCGTTCA AATACTTATT AAGGTATTAG ATGTAAATGA CAATGAACCA ACTTTTGCCC AATCAGTTTA CAAAGTAAAA TTGTTAGAGA ATACGGCAAA TGGGACCTTA GTGGTTAAGT TAAACGCTTC TGATGCAGAT GAAGGACCGA ACAGCGAGAT TGTGTATTCA CTCGGTAGTG ATGTGTCCTC CACTATACAG ACTAAGTTTA CCATAGATCC CATCTCAGGG GAAATCAGAA CTAAGGGAAA ATTAGATTAT GAAGAAGCAA AGTCCTACGA GATTCAGGTC ACTGCAACTG ACAAAGGAAC CCCTTCAATG TCAGGACATT GTAAAATTTC ATTAAAACTT GTGGACATCA ATGATAACAC ACCAGAAGTC TCAATAACGT CTCTCTCACT TCCCATCTCA GAGAACGCTT CCCTGGGCAC TGTCATTGCT CTCATCACGG TGTCGGATCG CGACTCTGGT ACGAATGGAC ATGTCACCTG CTCCCTGACG CCCCACGTCC CTTTCAAGCT GGTGTCCACC TTCAAGAATT ACTACTCGTT GGTGCTGGAC AGCGCCCTGG ACCGCGAGAG CGTGTCAGCC TATGAGCTGG TGGTGACCGC ACGGGACGGG GGCTCGCCTT CACTGTGGGC CACCACCAGC GTGTCCATCG AGGTGGCCGA CGTGAACGAC AACGCGCCGG CGTTCGCACA GCCTGAGTAC ACAGTATTCG TGAAGGAGAA CAACCCGCCG GGCTGCCACA TCTTCACGGT GTCAGCGTGG GATGCGGACG CGCAGGAGAA CGCGCTGGTG TCCTACTCGC TGGTGGAGCG GCGGGTGGGC GAGCGCGCGT TGTCGAGCTA CGTTTCGGTG CACGCGGAGA GCGGCAAGGT GTACGCGCTG CAGCCGCTGG ACCACGAGGA AGTGGAGCTG CTGCAGTTCC AGGTGAGCGC GCGGGATGCG GGCGTGCCGC CTCTGGGCAG CAACGTGACG CTGCAGGTGT TCGTGCTGGA CGAGAACGAC AACGCGCCGG CACTGTTGGC GCCTAGGGCT GGCACCGCTG CTGGCGCAGT GAGTGAGCTG GTGCCGTGGT CGGTGGGTGC AGGGCACGTG GTGGCGAAGG TGCGCGCAGT GGACGCTGAC TCAGGCTACA ACGCGTGGCT TTCGTACGAG CTTCAGCTGG GTACTGGCAG CGCTCGCATC CCGTTCCGCG TGGGGCTATA CACGGGTGAG ATCAGCACGA CACGTGCCCT AGACGAGGCT GACTCCCCTC GACACCGCCT ACTCGTGCTG GTGAAGGACC ACGGCGAACC AGCGTTGACA GCCACGGCCA CCGTGTTAGT GTCGTTGGTG GAAAGTGGCC AGGCACCCAA GGCCTCGTCG CGGGCGTGGG TGGGCGCCGC GGGCTCAGAG GCTACGCTGG TGGATGTCAA CGTGTACCTG ATCATCGCCA TCTGCGCGGT ATCCAGCCTG TTGGTGCTCA CGGTGCTGCT GTACACTGCG CTGCGGTGCT CGGTGCCACC CACCGAGGGT GCGCGCGCGC CAGGAAAGCC CACGCTGGTG TGCTCCAGCG CCGTGGGGAG CTGGTCTTAC TCGCAGCAGA GGCGGCAGAG GGTGTGCTCT GGGGAGGACC CCCCCAAGAC GGACCTCATG GCCTTCAGCC CTAGCTTATC TCAAGGTCCA GACTCCGCAG AAGAGAAACA GCTCTCAGAA TCAGAATACG TAGGAAAGCC ACGACAGCCC AACCCTGACT GGCGTTACTC TGCCTCCCTG AGAGCAGGCA TGCACAGCTC TGTGCACCTA GAGGAGGCTG GCATTCTACG GGCTGGTCCA GGAGGGCCTG ATCAGCAGTG GCCAACAGTA TCCAGTGCAA CACCAGAACC AGAGGCAGGA GAAGTGTCCC CTCCAGTCGG TGCGGGTGTC AACAGCAACA GCTGGACCTT TAAATACGGA CCAGGCAACC CCAAACAATC CGGTCCCGGT GAGTTGCCCG ACAAATTCAT TATCCCAGGA TCTCCTGCAA TCATCTCCAT CCGGCAGGAG CCTACTAACA GCCAAATTGA CAAAAGTGAC TTCATAACCT TCGGCAAAAA GGAGGAGACC AAGAAAAAGA AGAAAAAGAA GAAGGGTAAC AAGACCCAGG AGAAAAAAGA GAAAGGGAAC AGCACGACTG ACAACAGTGA CCAGTGA
The stop codons will be deleted if pcDNA3.1+ /C-(K)DYK vector is selected.
Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
PLoS genetics8(5)e1002695(2012)
Fox CS,Liu Y,White CC,Feitosa M,Smith AV,Heard-Costa N,Lohman K,,,,Johnson AD,Foster MC,Greenawalt DM,Griffin P,Ding J,Newman AB,Tylavsky F,Miljkovic I,Kritchevsky SB,Launer L,Garcia M,Eiriksdottir G,Carr JJ,Gudnason V,Harris TB,Cupples LA,Borecki IB
Comparative DNA sequence analysis of mouse and human protocadherin gene clusters.
Genome research11(3)389-404(2001 Mar)
Wu Q,Zhang T,Cheng JF,Kim Y,Grimwood J,Schmutz J,Dickson M,Noonan JP,Zhang MQ,Myers RM,Maniatis T