mRNA and Protein(s)
mRNA |
Protein |
Name |
NM_001106652.1 |
NP_001100122.1 |
thymic stromal cotransporter homolog |
XM_008763734.2 |
XP_008761956.1 |
thymic stromal cotransporter homolog isoform X1 |
Rattus norvegicus (Norway rat) |
Slc46a2 |
NP_001100122.1 |
Gallus gallus (chicken) |
SLC46A2 |
XP_429188.3 |
Pan troglodytes (chimpanzee) |
SLC46A2 |
XP_528392.2 |
Canis lupus familiaris (dog) |
SLC46A2 |
NP_001002997.1 |
Xenopus tropicalis (tropical clawed frog) |
LOC100487507 |
XP_002936742.1 |
|
SLC46A2 |
XP_001113919.1 |
Mus musculus (house mouse) |
Slc46a2 |
NP_066395.3 |
Danio rerio (zebrafish) |
LOC100002406 |
XP_001921462.3 |
Homo sapiens (human) |
SLC46A2 |
NP_149040.3 |
Bos taurus (cattle) |
SLC46A2 |
NP_001019690.1 |
Xenopus tropicalis (tropical clawed frog) |
LOC100487354 |
XP_002936741.2 |
Xenopus tropicalis (tropical clawed frog) |
LOC100487203 |
XP_002936740.2 |
Related articles in PubMed
SLC46 Family Transporters Facilitate Cytosolic Innate Immune Recognition of Monomeric Peptidoglycans.
Paik D, Monahan A, Caffrey DR, Elling R, Goldman WE, Silverman N
Journal of immunology (Baltimore, Md. : 1950)199(1)263-270(2017 Jul)
TSCOT+ thymic epithelial cell-mediated sensitive CD4 tolerance by direct presentation.
Ahn S, Lee G, Yang SJ, Lee D, Lee S, Shin HS, Kim MC, Lee KN, Palmer DC, Theoret MR, Jenkinson EJ, Anderson G, Restifo NP, Kim MG
PLoS biology6(8)e191(2008 Aug)
A putative 12 transmembrane domain cotransporter expressed in thymic cortical epithelial cells.
Kim MG, Flomerfelt FA, Lee KN, Chen C, Schwartz RH
Journal of immunology (Baltimore, Md. : 1950)164(6)3185-92(2000 Mar)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Slc46a2 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Slc46a2 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID |
ORa01889 |
Clone ID Related Accession (Same CDS sequence) |
NM_001106652.1
|
Accession Version |
NM_001106652.1 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 1443bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2019-10-10 |
Organism |
Rattus norvegicus(Norway rat) |
Product |
thymic stromal cotransporter homolog |
Comment |
Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH474039.2. On or before Oct 4, 2007 this sequence version replaced XM_232946.4, XM_001062037.1.
##Evidence-Data-START##
RNAseq introns :: single sample supports all introns SAMD00052296, SAMD00052297 [ECO:0000348]
##Evidence-Data-END##
|
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441
| ATGGGTCCCG GGTTCACCTG TCCGTGGAGC GGCTCGCTCT CTGGCTTCCG GGTGAGGACT TGGATCGAGC CTGTGGTGGC TTCAACCCAG GTGGCCGGTT CCCTCTATGA TACAGGACTA CTTCTGGTAC TGAAGGAGTC CTTTGCATCT GACGCTAGAG ACTCCTCTAA TTACAGTGCC AACCAGTCGC TGGGGGAACG TCAGGAGGAC CAACAGCAGA AGGCCATCTC CAATTTCTAC ATCATTTACA ACCTCGTGGT GGGCCTGACA CCCCTGCTGT CCGCCTATGT ACTGGGCTGG CTCAGCGACC GCTACCACCG TAAGATCTCT ATCTGCACGG CGATGCTGGG CTTCCTTCTG TCCCGCATCG GACTCTTACT CAAAGTGATG CTGGACTGGC CACTGGAGGT GATGTACGGA GCAGCGGCGC TCAATGGGCT GTGCGGGGGC TTCTCCGCTT ATTGGTCCGG GGTCATGGCG CTGGGATCCC TGAGCTGCTC CCAAAGCCGC CGCTCCGTGC GCCTCATCCT CATCGATTTA GTCCTAGGCT TGGCTGGGTT CTGTGGCAGT ATGGCTTCAG GGCATCTCTT CAAGCAAATC GTTGGGCACT CTGCGCAAGG CCTTCTGTTA ACCGCCTGCA GCGTGGGCTG TGCGGCGTTT GCCCTTTTCT ACAGTCTCTT CGTGCTAAAG GTCCCTGAAG CTGTGTCCAA GCCCAACAAG GTGCACCCCA CTGTAGATAC TGTGTCTGGC ATGATGGGCA CCTATCGAAC CCTGGATCCA GATCAACAGG ACAAGCCTAA TATACAGGCA AACCCTCCAA CTCCTGGAAA AGAGAAGCCT TCCCAAGCCA TCATTGCTCT GCTGTTTGTG GGCGCCATTG TTTATGACCT TGCTGTCGTG GGCACATTGG ACGTTATGGC CCTTTTCGTG CTAAAGGATC CTCTCCATTG GAACCAAGTG CAGCTGGGCT ATGGGATGGC TTCTGGGTAC ATAATCTTCA TAACCAGCTT CTTGGGTGTC TTGGTCTTCT CCCGCTACTT CCGGGACACC ACGATGATCA TAATTGGGAT GGTTTCCTTT GGGTCTGGAG CCCTTCTCTT GGCCTTTGTG AAGAAGACAT ACATGTTCTA TATTGCCCGA GCTGTCATGC TGTTTGCACT TATTCCCATC ACAACCATCC GGTCAGCCAT GTCCAAGCTT GTAAAGGACT CTTCCTATGG AAAGATTTTC GTCATACTGC AGCTGTGCCT AGCTCTGACT GGGGTGGTGA CATCCACCAT GTACAACAAG ATCTATCAGC TTACGCTGAA CAAGTTCGCC GGCACCTGCT TTCTTCTGTC TTCTTTTCTC TCCTTCTTGG CCATTGTCCC AATTGGTGTT GTGGCCTACA AACAAGTCCC GGGGTCACGA CAAGGAGAGT GTGCGGATAC ACAGAGGAGC TGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
NP_001100122.1 |
CDS | 134..1576 |
Translation | |
Target ORF information:
RefSeq Version | NM_001106652.1 |
Organism | Rattus norvegicus(Norway rat) |
Definition | Rattus norvegicus solute carrier family 46, member 2 (Slc46a2), mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
NM_001106652.1 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441
| ATGGGTCCCG GGTTCACCTG TCCGTGGAGC GGCTCGCTCT CTGGCTTCCG GGTGAGGACT TGGATCGAGC CTGTGGTGGC TTCAACCCAG GTGGCCGGTT CCCTCTATGA TACAGGACTA CTTCTGGTAC TGAAGGAGTC CTTTGCATCT GACGCTAGAG ACTCCTCTAA TTACAGTGCC AACCAGTCGC TGGGGGAACG TCAGGAGGAC CAACAGCAGA AGGCCATCTC CAATTTCTAC ATCATTTACA ACCTCGTGGT GGGCCTGACA CCCCTGCTGT CCGCCTATGT ACTGGGCTGG CTCAGCGACC GCTACCACCG TAAGATCTCT ATCTGCACGG CGATGCTGGG CTTCCTTCTG TCCCGCATCG GACTCTTACT CAAAGTGATG CTGGACTGGC CACTGGAGGT GATGTACGGA GCAGCGGCGC TCAATGGGCT GTGCGGGGGC TTCTCCGCTT ATTGGTCCGG GGTCATGGCG CTGGGATCCC TGAGCTGCTC CCAAAGCCGC CGCTCCGTGC GCCTCATCCT CATCGATTTA GTCCTAGGCT TGGCTGGGTT CTGTGGCAGT ATGGCTTCAG GGCATCTCTT CAAGCAAATC GTTGGGCACT CTGCGCAAGG CCTTCTGTTA ACCGCCTGCA GCGTGGGCTG TGCGGCGTTT GCCCTTTTCT ACAGTCTCTT CGTGCTAAAG GTCCCTGAAG CTGTGTCCAA GCCCAACAAG GTGCACCCCA CTGTAGATAC TGTGTCTGGC ATGATGGGCA CCTATCGAAC CCTGGATCCA GATCAACAGG ACAAGCCTAA TATACAGGCA AACCCTCCAA CTCCTGGAAA AGAGAAGCCT TCCCAAGCCA TCATTGCTCT GCTGTTTGTG GGCGCCATTG TTTATGACCT TGCTGTCGTG GGCACATTGG ACGTTATGGC CCTTTTCGTG CTAAAGGATC CTCTCCATTG GAACCAAGTG CAGCTGGGCT ATGGGATGGC TTCTGGGTAC ATAATCTTCA TAACCAGCTT CTTGGGTGTC TTGGTCTTCT CCCGCTACTT CCGGGACACC ACGATGATCA TAATTGGGAT GGTTTCCTTT GGGTCTGGAG CCCTTCTCTT GGCCTTTGTG AAGAAGACAT ACATGTTCTA TATTGCCCGA GCTGTCATGC TGTTTGCACT TATTCCCATC ACAACCATCC GGTCAGCCAT GTCCAAGCTT GTAAAGGACT CTTCCTATGG AAAGATTTTC GTCATACTGC AGCTGTGCCT AGCTCTGACT GGGGTGGTGA CATCCACCAT GTACAACAAG ATCTATCAGC TTACGCTGAA CAAGTTCGCC GGCACCTGCT TTCTTCTGTC TTCTTTTCTC TCCTTCTTGG CCATTGTCCC AATTGGTGTT GTGGCCTACA AACAAGTCCC GGGGTCACGA CAAGGAGAGT GTGCGGATAC ACAGAGGAGC TGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
ORa45491 |
Clone ID Related Accession (Same CDS sequence) |
XM_008763734.2
|
Accession Version |
XM_008763734.2 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 1359bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2016-07-25 |
Organism |
Rattus norvegicus(Norway rat) |
Product |
thymic stromal cotransporter homolog isoform X1 |
Comment |
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005104.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process
On Jul 26, 2016 this sequence version replaced XM_008763734.1.
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Version :: Rattus norvegicus Annotation Release 106
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 7.1
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
|
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321
| ATGGGTCCCG GGTTCACCTG TCCGTGGAGC GGCTCGCTCT CTGGCTTCCG GGTGAGGACT TGGATCGAGC CTGTGGTGGC TTCAACCCAG GTGGCCGGTT CCCTCTATGA TACAGGACTA CTTCTGGTAC TGAAGGAGTC CTTTGCATCT GACGCTAGAG ACTCCTCTAA TTACAGTGCC AACCAGTCGC TGGGGGAACG TCAGGAGGAC CAACAGCAGA AGGCCATCTC CAATTTCTAC ATCATTTACA ACCTCGTGGT GGGCCTGACA CCCCTGCTGT CCGCCTATGT ACTGGGCTGG CTCAGCGACC GCTACCACCG TAAGATCTCT ATCTGCACGG CGATGCTGGG CTTCCTTCTG TCCCGCATCG GACTCTTACT CAAAGTGATG CTGGACTGGC CACTGGAGGT GATGTACGGA GCAGCGGCGC TCAATGGGCT GTGCGGGGGC TTCTCCGCTT ATTGGTCCGG GGTCATGGCG CTGGGATCCC TGAGCTGCTC CCAAAGCCGC CGCTCCGTGC GCCTCATCCT CATCGATTTA GTCCTAGGCT TGGCTGGGTT CTGTGGCAGT ATGGCTTCAG GGCATCTCTT CAAGCAAATC GTTGGGCACT CTGCGCAAGG CCTTCTGTTA ACCGCCTGCA GCGTGGGCTG TGCGGCGTTT GCCCTTTTCT ACAGTCTCTT CGTGCTAAAG GTCCCTGAAG CTGTGTCCAA GCCCAACAAG GTGCACCCCA CTGTAGATAC TGTGTCTGGC ATGATGGGCA CCTATCGAAC CCTGGATCCA GATCAACAGG ACAAGCCTAA TATACAGGCA AACCCTCCAA CTCCTGGAAA AGAGAAGCCT TCCCAAGCCA TCATTGCTCT GCTGTTTGTG GGCGCCATTG TTTATGACCT TGCTGTCGTG GGCACATTGG ACGTTATGGC CCTTTTCGTG CTAAAGGATC CTCTCCATTG GAACCAAGTG CAGCTGGGCT ATGGGATGGC TTCTGGGTAC ATAATCTTCA TAACCAGCTT CTTGGGTGTC TTGGTCTTCT CCCGCTACTT CCGGGACACC ACGATGATCA TAATTGGGAT GGTTTCCTTT GGGTCTGGAG CCCTTCTCTT GGCCTTTGTG AAGAAGACAT ACATGTTCTA TATTGGAAAG ATTTTCGTCA TACTGCAGCT GTGCCTAGCT CTGACTGGGG TGGTGACATC CACCATGTAC AACAAGATCT ATCAGCTTAC GCTGAACAAG TTCGCCGGCA CCTGCTTTCT TCTGTCTTCT TTTCTCTCCT TCTTGGCCAT TGTCCCAATT GGTGTTGTGG CCTACAAACA AGTCCCGGGG TCACGACAAG GAGAGTGTGC GGATACACAG AGGAGCTGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
XP_008761956.1 |
CDS | 808..2166 |
Translation | |
Target ORF information:
RefSeq Version | XM_008763734.2 |
Organism | Rattus norvegicus(Norway rat) |
Definition | Rattus norvegicus solute carrier family 46, member 2 (Slc46a2), transcript variant X1, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
XM_008763734.2 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321
| ATGGGTCCCG GGTTCACCTG TCCGTGGAGC GGCTCGCTCT CTGGCTTCCG GGTGAGGACT TGGATCGAGC CTGTGGTGGC TTCAACCCAG GTGGCCGGTT CCCTCTATGA TACAGGACTA CTTCTGGTAC TGAAGGAGTC CTTTGCATCT GACGCTAGAG ACTCCTCTAA TTACAGTGCC AACCAGTCGC TGGGGGAACG TCAGGAGGAC CAACAGCAGA AGGCCATCTC CAATTTCTAC ATCATTTACA ACCTCGTGGT GGGCCTGACA CCCCTGCTGT CCGCCTATGT ACTGGGCTGG CTCAGCGACC GCTACCACCG TAAGATCTCT ATCTGCACGG CGATGCTGGG CTTCCTTCTG TCCCGCATCG GACTCTTACT CAAAGTGATG CTGGACTGGC CACTGGAGGT GATGTACGGA GCAGCGGCGC TCAATGGGCT GTGCGGGGGC TTCTCCGCTT ATTGGTCCGG GGTCATGGCG CTGGGATCCC TGAGCTGCTC CCAAAGCCGC CGCTCCGTGC GCCTCATCCT CATCGATTTA GTCCTAGGCT TGGCTGGGTT CTGTGGCAGT ATGGCTTCAG GGCATCTCTT CAAGCAAATC GTTGGGCACT CTGCGCAAGG CCTTCTGTTA ACCGCCTGCA GCGTGGGCTG TGCGGCGTTT GCCCTTTTCT ACAGTCTCTT CGTGCTAAAG GTCCCTGAAG CTGTGTCCAA GCCCAACAAG GTGCACCCCA CTGTAGATAC TGTGTCTGGC ATGATGGGCA CCTATCGAAC CCTGGATCCA GATCAACAGG ACAAGCCTAA TATACAGGCA AACCCTCCAA CTCCTGGAAA AGAGAAGCCT TCCCAAGCCA TCATTGCTCT GCTGTTTGTG GGCGCCATTG TTTATGACCT TGCTGTCGTG GGCACATTGG ACGTTATGGC CCTTTTCGTG CTAAAGGATC CTCTCCATTG GAACCAAGTG CAGCTGGGCT ATGGGATGGC TTCTGGGTAC ATAATCTTCA TAACCAGCTT CTTGGGTGTC TTGGTCTTCT CCCGCTACTT CCGGGACACC ACGATGATCA TAATTGGGAT GGTTTCCTTT GGGTCTGGAG CCCTTCTCTT GGCCTTTGTG AAGAAGACAT ACATGTTCTA TATTGGAAAG ATTTTCGTCA TACTGCAGCT GTGCCTAGCT CTGACTGGGG TGGTGACATC CACCATGTAC AACAAGATCT ATCAGCTTAC GCTGAACAAG TTCGCCGGCA CCTGCTTTCT TCTGTCTTCT TTTCTCTCCT TCTTGGCCAT TGTCCCAATT GGTGTTGTGG CCTACAAACA AGTCCCGGGG TCACGACAAG GAGAGTGTGC GGATACACAG AGGAGCTGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
 |
TSCOT+ thymic epithelial cell-mediated sensitive CD4 tolerance by direct presentation.
PLoS biology6(8)e191(2008 Aug)
Ahn S,Lee G,Yang SJ,Lee D,Lee S,Shin HS,Kim MC,Lee KN,Palmer DC,Theoret MR,Jenkinson EJ,Anderson G,Restifo NP,Kim MG |