Gene Symbol | Sema3f |
Entrez Gene ID | 315996 |
Full Name | semaphorin 3F |
Synonyms | SemaIV |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
ORF » Species Summary » Rattus norvegicus » Sema3f cDNA ORF clone
Gene Symbol | Sema3f |
Entrez Gene ID | 315996 |
Full Name | semaphorin 3F |
Synonyms | SemaIV |
General protein information |
|
Gene Type | protein-coding |
Organism | Rattus norvegicus(Norway rat) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_017595691.1 | XP_017451180.1 | semaphorin-3F isoform X1 |
NM_001108185.1 | NP_001101655.1 | semaphorin-3F precursor |
XM_017595693.1 | XP_017451182.1 | semaphorin-3F isoform X1 |
XM_008766532.2 | XP_008764754.1 | semaphorin-3F isoform X2 |
XM_017595692.1 | XP_017451181.1 | semaphorin-3F isoform X1 |
XM_006243778.3 | XP_006243840.1 | semaphorin-3F isoform X2 |
XM_017595695.1 | XP_017451184.1 | semaphorin-3F isoform X4 |
XM_017595694.1 | XP_017451183.1 | semaphorin-3F isoform X3 |
Pan troglodytes (chimpanzee) | SEMA3F | XP_003309850.2 |
SEMA3F | XP_001103281.1 | |
Rattus norvegicus (Norway rat) | Sema3f | NP_001101655.1 |
Danio rerio (zebrafish) | sema3fb | XP_001921106.2 |
Canis lupus familiaris (dog) | SEMA3F | XP_541879.1 |
Mus musculus (house mouse) | Sema3f | NP_035479.2 |
Xenopus tropicalis (tropical clawed frog) | sema3f | NP_001011157.1 |
Homo sapiens (human) | SEMA3F | NP_004177.3 |
Bos taurus (cattle) | SEMA3F | XP_002697079.1 |
Danio rerio (zebrafish) | sema3fa | NP_001014822.1 |
Gallus gallus (chicken) | SEMA3F | NP_989589.1 |
Down-regulation of semaphorin 3F in rat retinal ganglion cells in response to optic nerve crush.
Ko JA, Minamoto A, Sugimoto Y, Kiuchi Y
Cell biochemistry and function34(5)378-84(2016 Jul)
Neural cell adhesion molecule NrCAM regulates Semaphorin 3F-induced dendritic spine remodeling.
Demyanenko GP, Mohan V, Zhang X, Brennaman LH, Dharbal KE, Tran TS, Manis PB, Maness PF
The Journal of neuroscience : the official journal of the Society for Neuroscience34(34)11274-87(2014 Aug)
Extracellular matrix secretion by cardiac fibroblasts: role of microRNA-29b and microRNA-30c.
Abonnenc M, Nabeebaccus AA, Mayr U, Barallobre-Barreiro J, Dong X, Cuello F, Sur S, Drozdov I, Langley SR, Lu R, Stathopoulou K, Didangelos A, Yin X, Zimmermann WH, Shah AM, Zampetaki A, Mayr M
Circulation research113(10)1138-47(2013 Oct)
Plexin A3 is involved in semaphorin 3F-mediated oligodendrocyte precursor cell migration.
Xiang X, Zhang X, Huang QL
Neuroscience letters530(2)127-32(2012 Nov)
Sema3F downregulates p53 expression leading to axonal growth cone collapse in primary hippocampal neurons.
Yang G, Qu X, Zhang J, Zhao W, Wang H
International journal of clinical and experimental pathology5(7)634-41(2012)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
Sema3F may contribute to the regulation of retinal ganglion cell function or survival.
Title: Down-regulation of semaphorin 3F in rat retinal ganglion cells in response to optic nerve crush.
These results suggest that plexin A3 is expressed in OPCs and immature oligodendrocytes and is involved in OPC migration.
Title: Plexin A3 is involved in semaphorin 3F-mediated oligodendrocyte precursor cell migration.
These data reveal a novel mechanism by which Sema3F can induce hippocampal neuron growth cone collapse.
Title: Sema3F downregulates p53 expression leading to axonal growth cone collapse in primary hippocampal neurons.
In combination with other inhibitory molecules, semaphorin 3F converts estrogenized myometrium to an inhospitable environment for sympathetic nerves.
Title: Estrogen up-regulation of semaphorin 3F correlates with sympathetic denervation of the rat uterus.
These data are consistent with a model whereby Sema3A and 3F, in combination with other guidance molecules, contributes to the navigation of DA axons to their final synaptic targets.
Title: Expression by midbrain dopamine neurons of Sema3A and 3F receptors is associated with chemorepulsion in vitro but a mild in vivo phenotype.
The following Sema3f gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Sema3f cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ORa06843 | |
Clone ID Related Accession (Same CDS sequence) | NM_001108185.1 , XM_008766532.2 , XM_006243778.3 | |
Accession Version | NM_001108185.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2358bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-04-18 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | semaphorin-3F precursor | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CH473954.2. On or before Oct 22, 2008 this sequence version replaced XM_236623.4, XM_001073412.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## RNAseq introns :: mixed/partial sample support SAMD00052296, SAMD00052297 [ECO:0000350] ##Evidence-Data-END## |
1 | ATGCTTGTCA CTGGCTTCAT CCTCTGGGCT TCCCTGCTGA CTGGGGCCTG GCCAGCTGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001101655.1 |
CDS | 203..2560 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001108185.1 |
1 | ATGCTTGTCA CTGGCTTCAT CCTCTGGGCT TCCCTGCTGA CTGGGGCCTG GCCAGCTGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa06843 | |
Clone ID Related Accession (Same CDS sequence) | NM_001108185.1 , XM_008766532.2 , XM_006243778.3 | |
Accession Version | XM_008766532.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2358bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | semaphorin-3F isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005107.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_008766532.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCTTGTCA CTGGCTTCAT CCTCTGGGCT TCCCTGCTGA CTGGGGCCTG GCCAGCTGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_008764754.1 |
CDS | 88..2445 |
Translation |
Target ORF information:
Target ORF information:
|
XM_008766532.2 |
1 | ATGCTTGTCA CTGGCTTCAT CCTCTGGGCT TCCCTGCTGA CTGGGGCCTG GCCAGCTGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa06843 | |
Clone ID Related Accession (Same CDS sequence) | NM_001108185.1 , XM_008766532.2 , XM_006243778.3 | |
Accession Version | XM_006243778.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2358bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | semaphorin-3F isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005107.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 26, 2016 this sequence version replaced XM_006243778.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCTTGTCA CTGGCTTCAT CCTCTGGGCT TCCCTGCTGA CTGGGGCCTG GCCAGCTGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006243840.1 |
CDS | 750..3107 |
Translation |
Target ORF information:
Target ORF information:
|
XM_006243778.3 |
1 | ATGCTTGTCA CTGGCTTCAT CCTCTGGGCT TCCCTGCTGA CTGGGGCCTG GCCAGCTGCC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa62440 | |
Clone ID Related Accession (Same CDS sequence) | XM_017595691.1 , XM_017595693.1 , XM_017595692.1 | |
Accession Version | XM_017595691.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2409bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | semaphorin-3F isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005107.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTGTCCAC AGAGCTGGAG CCTGCTTCCT GGGCCCCAGG CCCCTCCCAC AATGCTTGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017451180.1 |
CDS | 866..3274 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017595691.1 |
1 | ATGTGTCCAC AGAGCTGGAG CCTGCTTCCT GGGCCCCAGG CCCCTCCCAC AATGCTTGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa62440 | |
Clone ID Related Accession (Same CDS sequence) | XM_017595691.1 , XM_017595693.1 , XM_017595692.1 | |
Accession Version | XM_017595693.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2409bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | semaphorin-3F isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005107.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTGTCCAC AGAGCTGGAG CCTGCTTCCT GGGCCCCAGG CCCCTCCCAC AATGCTTGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017451182.1 |
CDS | 813..3221 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017595693.1 |
1 | ATGTGTCCAC AGAGCTGGAG CCTGCTTCCT GGGCCCCAGG CCCCTCCCAC AATGCTTGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa62440 | |
Clone ID Related Accession (Same CDS sequence) | XM_017595691.1 , XM_017595693.1 , XM_017595692.1 | |
Accession Version | XM_017595692.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2409bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | semaphorin-3F isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005107.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTGTCCAC AGAGCTGGAG CCTGCTTCCT GGGCCCCAGG CCCCTCCCAC AATGCTTGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017451181.1 |
CDS | 267..2675 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017595692.1 |
1 | ATGTGTCCAC AGAGCTGGAG CCTGCTTCCT GGGCCCCAGG CCCCTCCCAC AATGCTTGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa62441 | |
Clone ID Related Accession (Same CDS sequence) | XM_017595694.1 | |
Accession Version | XM_017595694.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 2316bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | semaphorin-3F isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005107.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTGTCCAC AGAGCTGGAG CCTGCTTCCT GGGCCCCAGG CCCCTCCCAC AATGCTTGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017451183.1 |
CDS | 865..3180 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017595694.1 |
1 | ATGTGTCCAC AGAGCTGGAG CCTGCTTCCT GGGCCCCAGG CCCCTCCCAC AATGCTTGTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ORa62442 | |
Clone ID Related Accession (Same CDS sequence) | XM_017595695.1 | |
Accession Version | XM_017595695.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1911bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-07-25 | |
Organism | Rattus norvegicus(Norway rat) | |
Product | semaphorin-3F isoform X4 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_005107.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Rattus norvegicus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCCATGGA CTTCCCCAGG AGACCTGGCT GGCCAGAATT CAAACCGGAG GACCCTGCGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_017451184.1 |
CDS | 1171..3081 |
Translation |
Target ORF information:
Target ORF information:
|
XM_017595695.1 |
1 | ATGCCATGGA CTTCCCCAGG AGACCTGGCT GGCCAGAATT CAAACCGGAG GACCCTGCGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Down-regulation of semaphorin 3F in rat retinal ganglion cells in response to optic nerve crush. |
Neural cell adhesion molecule NrCAM regulates Semaphorin 3F-induced dendritic spine remodeling. |
Extracellular matrix secretion by cardiac fibroblasts: role of microRNA-29b and microRNA-30c. |
Plexin A3 is involved in semaphorin 3F-mediated oligodendrocyte precursor cell migration. |
Sema3F downregulates p53 expression leading to axonal growth cone collapse in primary hippocampal neurons. |