Gene Symbol | UPK1B |
Entrez Gene ID | 282113 |
Full Name | uroplakin 1B |
General protein information |
|
Gene Type | protein-coding |
Organism | Bos taurus(cattle) |
ORF » Species Summary » Bos taurus » UPK1B cDNA ORF clone
Gene Symbol | UPK1B |
Entrez Gene ID | 282113 |
Full Name | uroplakin 1B |
General protein information |
|
Gene Type | protein-coding |
Organism | Bos taurus(cattle) |
mRNA | Protein | Name |
---|---|---|
XM_005201259.3 | XP_005201316.1 | uroplakin-1b isoform X1 |
XM_024992546.1 | XP_024848314.1 | uroplakin-1b isoform X3 |
NM_174482.2 | NP_776907.2 | uroplakin-1b |
XM_005201261.4 | XP_005201318.2 | uroplakin-1b isoform X2 |
XM_010801071.3 | XP_010799373.2 | uroplakin-1b isoform X2 |
XM_005201259.4 | XP_005201316.2 | uroplakin-1b isoform X1 |
XM_005201261.3 | XP_005201318.1 | uroplakin-1b isoform X2 |
XM_010801071.2 | XP_010799373.1 | uroplakin-1b isoform X2 |
UPK1B | XP_001108219.1 | |
Bos taurus (cattle) | UPK1B | NP_776907.2 |
Rattus norvegicus (Norway rat) | Upk1b | NP_001019424.1 |
Homo sapiens (human) | UPK1B | NP_008883.2 |
Mus musculus (house mouse) | Upk1b | NP_849255.2 |
Xenopus tropicalis (tropical clawed frog) | upk1b | NP_001037968.1 |
Gallus gallus (chicken) | UPK1B | XP_416567.3 |
Pan troglodytes (chimpanzee) | UPK1B | XP_526274.3 |
Canis lupus familiaris (dog) | UPK1B | XP_850140.2 |
A whole-genome assembly of the domestic cow, Bos taurus.
Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Mar?ais G, Roberts M, Subramanian P, Yorke JA, Salzberg SL
Genome biology10(4)R42(2009)
Specific heterodimer formation is a prerequisite for uroplakins to exit from the endoplasmic reticulum.
Tu L, Sun TT, Kreibich G
Molecular biology of the cell13(12)4221-30(2002 Dec)
Uroplakin IIIb, a urothelial differentiation marker, dimerizes with uroplakin Ib as an early step of urothelial plaque assembly.
Deng FM, Liang FX, Tu L, Resing KA, Hu P, Supino M, Hu CC, Zhou G, Ding M, Kreibich G, Sun TT
The Journal of cell biology159(4)685-94(2002 Nov)
Organization of uroplakin subunits: transmembrane topology, pair formation and plaque composition.
Liang FX, Riedel I, Deng FM, Zhou G, Xu C, Wu XR, Kong XP, Moll R, Sun TT
The Biochemical journal355(Pt 1)13-8(2001 Apr)
Selective interactions of UPIa and UPIb, two members of the transmembrane 4 superfamily, with distinct single transmembrane-domained proteins in differentiated urothelial cells.
Wu XR, Medina JJ, Sun TT
The Journal of biological chemistry270(50)29752-9(1995 Dec)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following UPK1B gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the UPK1B cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OBa43479 | |
Clone ID Related Accession (Same CDS sequence) | NM_174482.2 | |
Accession Version | NM_174482.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 783bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-10-19 | |
Organism | Bos taurus(cattle) | |
Product | uroplakin-1b | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC116014.1. On Jun 4, 2006 this sequence version replaced NM_174482.1. ##Evidence-Data-START## Transcript exon combination :: BC116014.1, EE334769.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN03145415, SAMN03145416 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGCCAAAG ACGACTCCAC TGTTCGTTGC TTCCAGGGCC TGCTGATTTT TGGAAATGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_776907.2 |
CDS | 130..912 |
Translation |
Target ORF information:
Target ORF information:
|
NM_174482.2 |
1 | ATGGCCAAAG ACGACTCCAC TGTTCGTTGC TTCCAGGGCC TGCTGATTTT TGGAAATGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OBa15576 | |
Clone ID Related Accession (Same CDS sequence) | XM_005201259.3 | |
Accession Version | XM_005201259.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 933bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-01-25 | |
Organism | Bos taurus(cattle) | |
Product | uroplakin-1b isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003103810.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jan 26, 2016 this sequence version replaced XM_005201259.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Bos taurus Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCCTTCTC CCAATCACAG ACCACCCTTC CCTGGTCCCA GAGGTTCAAA GGATTGGTGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005201316.1 |
CDS | 13..945 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005201259.3 |
1 | ATGCCTTCTC CCAATCACAG ACCACCCTTC CCTGGTCCCA GAGGTTCAAA GGATTGGTGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OBa15577 | |
Clone ID Related Accession (Same CDS sequence) | XM_005201261.3 , XM_010801071.2 | |
Accession Version | XM_005201261.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 783bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-01-25 | |
Organism | Bos taurus(cattle) | |
Product | uroplakin-1b isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003103810.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jan 26, 2016 this sequence version replaced XM_005201261.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Bos taurus Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCCAAAG ACGACTCCAC TGTTCGTTGC TTCCAGGGCC TGCTGATTTT TGGAAATGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005201318.1 |
CDS | 139..921 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005201261.3 |
1 | ATGGCCAAAG ACGACTCCAC TGTTCGTTGC TTCCAGGGCC TGCTGATTTT TGGAAATGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OBa15577 | |
Clone ID Related Accession (Same CDS sequence) | XM_005201261.3 , XM_010801071.2 | |
Accession Version | XM_010801071.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 783bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-01-25 | |
Organism | Bos taurus(cattle) | |
Product | uroplakin-1b isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003103810.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jan 26, 2016 this sequence version replaced XM_010801071.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Bos taurus Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 6.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCCAAAG ACGACTCCAC TGTTCGTTGC TTCCAGGGCC TGCTGATTTT TGGAAATGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_010799373.1 |
CDS | 152..934 |
Translation |
Target ORF information:
Target ORF information:
|
XM_010801071.2 |
1 | ATGGCCAAAG ACGACTCCAC TGTTCGTTGC TTCCAGGGCC TGCTGATTTT TGGAAATGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OBa218605 | |
Clone ID Related Accession (Same CDS sequence) | XM_005201259.4 | |
Accession Version | XM_005201259.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 933bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-05-06 | |
Organism | Bos taurus(cattle) | |
Product | uroplakin-1b isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037328.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On May 7, 2018 this sequence version replaced XM_005201259.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Bos taurus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGCCTTCTC CCAATCACAG ACCACCCTTC CCTGGTCCCA GAGGTTCAAA GGATTGGTGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005201316.2 |
CDS | 141..1073 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005201259.4 |
1 | ATGCCTTCTC CCAATCACAG ACCACCCTTC CCTGGTCCCA GAGGTTCAAA GGATTGGTGC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OBa218606 | |
Clone ID Related Accession (Same CDS sequence) | XM_005201261.4 , XM_010801071.3 | |
Accession Version | XM_005201261.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 783bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-05-06 | |
Organism | Bos taurus(cattle) | |
Product | uroplakin-1b isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037328.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On May 7, 2018 this sequence version replaced XM_005201261.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Bos taurus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCCAAAG ACGACTCCAC TGTTCGTTGC TTCCAGGGCC TGCTGATTTT TGGAAATGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_005201318.2 |
CDS | 177..959 |
Translation |
Target ORF information:
Target ORF information:
|
XM_005201261.4 |
1 | ATGGCCAAAG ACGACTCCAC TGTTCGTTGC TTCCAGGGCC TGCTGATTTT TGGAAATGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OBa218606 | |
Clone ID Related Accession (Same CDS sequence) | XM_005201261.4 , XM_010801071.3 | |
Accession Version | XM_010801071.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 783bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-05-06 | |
Organism | Bos taurus(cattle) | |
Product | uroplakin-1b isoform X2 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037328.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On May 7, 2018 this sequence version replaced XM_010801071.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Bos taurus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCCAAAG ACGACTCCAC TGTTCGTTGC TTCCAGGGCC TGCTGATTTT TGGAAATGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_010799373.2 |
CDS | 190..972 |
Translation |
Target ORF information:
Target ORF information:
|
XM_010801071.3 |
1 | ATGGCCAAAG ACGACTCCAC TGTTCGTTGC TTCCAGGGCC TGCTGATTTT TGGAAATGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OBa218607 | |
Clone ID Related Accession (Same CDS sequence) | XM_024992546.1 | |
Accession Version | XM_024992546.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 714bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-05-06 | |
Organism | Bos taurus(cattle) | |
Product | uroplakin-1b isoform X3 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037328.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Bos taurus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTGCGGCA TCGCCCTGAT GGCAGAGTGC ATCTTCTTTG TATCAGACCA AAACAGCCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_024848314.1 |
CDS | 90..803 |
Translation |
Target ORF information:
Target ORF information:
|
XM_024992546.1 |
1 | ATGTGCGGCA TCGCCCTGAT GGCAGAGTGC ATCTTCTTTG TATCAGACCA AAACAGCCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
A whole-genome assembly of the domestic cow, Bos taurus. |
Specific heterodimer formation is a prerequisite for uroplakins to exit from the endoplasmic reticulum. |
Uroplakin IIIb, a urothelial differentiation marker, dimerizes with uroplakin Ib as an early step of urothelial plaque assembly. |
Organization of uroplakin subunits: transmembrane topology, pair formation and plaque composition. |
Selective interactions of UPIa and UPIb, two members of the transmembrane 4 superfamily, with distinct single transmembrane-domained proteins in differentiated urothelial cells. |