Gene Symbol | ptbp1a |
Entrez Gene ID | 323490 |
Full Name | polypyrimidine tract binding protein 1a |
Synonyms | ptbp1,wu:fb99f12,zgc:110689 |
General protein information |
|
Gene Type | protein-coding |
Organism | Danio rerio(zebrafish) |
ORF » Species Summary » Danio rerio » ptbp1a cDNA ORF clone
Gene Symbol | ptbp1a |
Entrez Gene ID | 323490 |
Full Name | polypyrimidine tract binding protein 1a |
Synonyms | ptbp1,wu:fb99f12,zgc:110689 |
General protein information |
|
Gene Type | protein-coding |
Organism | Danio rerio(zebrafish) |
mRNA | Protein | Name |
---|---|---|
NM_001020477.1 | NP_001018313.1 | polypyrimidine tract binding protein 1a |
XM_021478816.1 | XP_021334491.1 | polypyrimidine tract binding protein 1a isoform X1 |
PTBP1 | XP_001092088.2 | |
Danio rerio (zebrafish) | ptbp1b | NP_001116126.1 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP003945 | XP_318405.4 |
Arabidopsis thaliana (thale cress) | PTB3 | NP_001077673.1 |
Xenopus tropicalis (tropical clawed frog) | ptbp1 | NP_001011140.1 |
Homo sapiens (human) | PTBP1 | NP_002810.1 |
Canis lupus familiaris (dog) | PTBP1 | XP_542215.2 |
Caenorhabditis elegans (roundworm) | ptb-1 | NP_741041.1 |
Drosophila melanogaster (fruit fly) | heph | NP_788776.2 |
Oryza sativa (rice) | Os05g0437300 | NP_001055652.1 |
Pan troglodytes (chimpanzee) | PTBP1 | XP_001172084.2 |
Bos taurus (cattle) | PTBP1 | NP_776867.1 |
Mus musculus (house mouse) | Ptbp1 | NP_001070831.1 |
Rattus norvegicus (Norway rat) | Ptbp1 | NP_001257986.1 |
Gallus gallus (chicken) | PTBP1 | NP_001026106.1 |
Danio rerio (zebrafish) | ptbp1a | NP_001018313.1 |
Oryza sativa (rice) | Os01g0867800 | NP_001044916.1 |
RFX transcription factors are essential for hearing in mice.
Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M, Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD, Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W, Hertzano R
Nature communications68549(2015 Oct)
Synergistic Induction of Potential Warburg Effect in Zebrafish Hepatocellular Carcinoma by Co-Transgenic Expression of Myc and xmrk Oncogenes.
Li Z, Zheng W, Li H, Li C, Gong Z
PloS one10(7)e0132319(2015)
On the crucial cerebellar wound healing-related pathways and their cross-talks after traumatic brain injury in Danio rerio.
Wu CC, Tsai TH, Chang C, Lee TT, Lin C, Cheng IH, Sun MC, Chuang YJ, Chen BS
PloS one9(6)e97902(2014)
Evolution of the vertebrate paralemmin gene family: ancient origin of gene duplicates suggests distinct functions.
Hultqvist G, Ocampo Daza D, Larhammar D, Kilimann MW
PloS one7(7)e41850(2012)
hnRNP I is required to generate the Ca2+ signal that causes egg activation in zebrafish.
Mei W, Lee KW, Marlow FL, Miller AL, Mullins MC
Development (Cambridge, England)136(17)3007-17(2009 Sep)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
Data report on a zebrafish maternal-effect mutant, brom bones, which is defective in the cytosolic Ca(2+) rise and subsequent egg activation events, including cortical granule exocytosis and cytoplasmic segregation [brom bones].
Title: hnRNP I is required to generate the Ca2+ signal that causes egg activation in zebrafish.
Two stretches of polypyrimidine tracts designated PPT1 and PPT2 which influence the IRES activity of cx55.5 protein were identified; deletion of PPT1 results in an appreciable decrease of the IRES activity
Title: Characterization of the internal IRES element of the zebrafish connexin55.5 reveals functional implication of the polypyrimidine tract binding protein.
The following ptbp1a gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the ptbp1a cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | ODa32046 | |
Clone ID Related Accession (Same CDS sequence) | NM_001020477.1 | |
Accession Version | NM_001020477.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1725bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2018-11-23 | |
Organism | Danio rerio(zebrafish) | |
Product | polypyrimidine tract binding protein 1a | |
Comment | Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC095372.1. ##Evidence-Data-START## Transcript exon combination :: BC095372.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## |
1 | ATGGACGGCC GTTTAGAGAC TGATCTGTAT CCTCTGGGAT CCAGTTACGT CACTGAAATA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001018313.1 |
CDS | 19..1743 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001020477.1 |
1 | ATGGACGGCC GTTTAGAGAC TGATCTGTAT CCTCTGGGAT CCAGTTACGT CACTGAAATA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | ODa150269 | |
Clone ID Related Accession (Same CDS sequence) | XM_021478816.1 | |
Accession Version | XM_021478816.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1722bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-06-14 | |
Organism | Danio rerio(zebrafish) | |
Product | polypyrimidine tract binding protein 1a isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007113.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGACGGCC GTTTAGAGAC TGATCTGTAT CCTCTGGGAT CCAGTTACGT CACTGAAATA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_021334491.1 |
CDS | 89..1810 |
Translation |
Target ORF information:
Target ORF information:
|
XM_021478816.1 |
1 | ATGGACGGCC GTTTAGAGAC TGATCTGTAT CCTCTGGGAT CCAGTTACGT CACTGAAATA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RFX transcription factors are essential for hearing in mice. |
Synergistic Induction of Potential Warburg Effect in Zebrafish Hepatocellular Carcinoma by Co-Transgenic Expression of Myc and xmrk Oncogenes. |
On the crucial cerebellar wound healing-related pathways and their cross-talks after traumatic brain injury in Danio rerio. |
Evolution of the vertebrate paralemmin gene family: ancient origin of gene duplicates suggests distinct functions. |
hnRNP I is required to generate the Ca2+ signal that causes egg activation in zebrafish. |