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ABO cDNA ORF clone, Danio rerio(Zebrafish)

Summary

Gene Symbol ABO
Entrez Gene ID 563897
Full Name ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase)
Synonyms si:dkey-16g11.2
General protein information
Preferred Names

ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase)

Names

uncharacterized protein LOC563897
Gene Type protein-coding
Organism Danio rerio(Zebrafish)

Reference Sequences (RefSeq)

mRNA and Protein(s)

mRNA Protein Name
NM_001123269.1 NP_001116741.1 uncharacterized protein LOC563897
XM_017356137.1 XP_017211626.1 uncharacterized protein LOC563897 isoform X1

Pathways from BioSystems


Homologies


Canis lupus familiaris (dog) GBGT1 NP_001003193.1
Danio rerio (zebrafish) LOC100005704 XP_005165294.1
Danio rerio (zebrafish) LOC100330771 XP_002661025.1
Homo sapiens (human) GBGT1 NP_068836.2
Danio rerio (zebrafish) gbgt1l3 NP_001004620.1
Danio rerio (zebrafish) si:ch211-287c22.1 NP_001122030.1
Danio rerio (zebrafish) gbgt1l1 NP_956623.1
Danio rerio (zebrafish) gbgt1l4 NP_956419.1
Danio rerio (zebrafish) gbgt1l2 NP_001120986.1
Danio rerio (zebrafish) abo NP_001116741.1
Pan troglodytes (chimpanzee) GBGT1 XP_520336.2
Mus musculus (house mouse) Gbgt1 NP_631936.2
Danio rerio (zebrafish) si:ch211-135f11.4 XP_001344454.2
Bos taurus (cattle) GBGT1 NP_001069977.1
Gallus gallus (chicken) GBGT1 NP_001025854.1

Gene Ontology


Bibliography

Related articles in PubMed

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y, Bobe J
BMC genomics17368(2016 05)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

The following ABO gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the ABO cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID Accession No. Definition **Vector *Turnaround time Price (USD) Select
ODa35273 NM_001123269.1
Latest version!		 Danio rerio ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) (abo), mRNA. pcDNA3.1+/C-(K)DYK or customized vector 7-9 $174.30
$249.00
ODa44207 XM_017356137.1
Latest version!		 Danio rerio ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) (abo), transcript variant X1, mRNA. pcDNA3.1+/C-(K)DYK or customized vector 7-9 $104.30
$149.00

ORF Online Only Promotion

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*Business Day

** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)


CloneID ODa35273
Clone ID Related Accession (Same CDS sequence) NM_001123269.1
Accession Version NM_001123269.1 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 915bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2017-08-05
Organism Danio rerio(zebrafish)
Product uncharacterized protein LOC563897
Comment Comment: PREDICTED REFSEQ: This record has not been reviewed and the function is unknown. The reference sequence was derived from BX842571.5. On Apr 11, 2008 this sequence version replaced XM_687260.2. ##Evidence-Data-START## Transcript exon combination :: BI884716.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA2168446, SAMEA2168447 [ECO:0000348] ##Evidence-Data-END## 

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
ATGAAACTTA AAGTCTTATC TCTACTCATA CTGACTGGCT TCTGTCTAAC TGGACTCCTT 
TATCTGGGCT TCACCTCTGG ATGGATTAAC CCATATAGCC AAGCTGAATT GACACCATGG 
TTAGCCCCAA TTGTATGGGA GGGAACGTTT GATCCCAAAC TGATTGATTC AATCTACAAA 
AAACAGAACA TCACAGTAGC GACTACAGTC TTCGCTCTTG GCAAATACAC AGTGTTTCTT 
AAAGATTTCC TGGAGTCTGC AGAGCGCTAT TACTTTGTTG GGTTTCGTGT GCACTATTAT 
GTCTTCACCG ATCACCCAGA ACAGGTTCCT GTTGTGAAAC TGGGTGTAGA ACGTAAACTG 
ACGGTGATGA CAGTTAAAAG TTCTAACAGA TGGCAGGAGA TGACATTGCG GAGGATGGAG 
AGGGTGGAGA AACTGATTGA GAGCCGATTG GTGAAGGAAG CAGACTATGT TTTCAGCCTT 
GATGTGGATA CAAAGTTCTA CGGCCGCTGG GGAGCAGAGA CTTTGGGTGA TCTTATAGGT 
GTGATTCATC CTGGTTACTA TCATACACGA CGTGAGCAAT TCCCTTATGA GCGAAGGCCT 
GAGTCTCAAG CGTTTATCCC TTATTCTGAA GGTGATTATT ATTATTGTGG AGCTGTGCTT 
GGTGGTAAAG TGAAAGATGT ACATGAGGTT GCTAAAACCT GCCGAGAGCA GCTGGACATC 
GATGCAGCTA AATCCATTGA GGCAGCATGG CAGGAGGAGT CCCATTTGAA TAAGTATTTG 
CTGTATAACA AACCCAGTAA ACTGCTTTCA CCTGAGTACA TGTGGCAGGA CTTGGTACCG 
CAGGCAAATA GGGTCAAAAT CATTCGCTTC TCTCAAGTTA TTAAAAATTA TGCAGACGTT 
CGTCCAAACC CATAA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq NP_001116741.1
CDS23..937
Translation

Target ORF information:

RefSeq Version NM_001123269.1
Organism Danio rerio(zebrafish)
Definition Danio rerio ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) (abo), mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 NM_001123269.1

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
601
661
721
781
841
901
ATGAAACTTA AAGTCTTATC TCTACTCATA CTGACTGGCT TCTGTCTAAC TGGACTCCTT 
TATCTGGGCT TCACCTCTGG ATGGATTAAC CCATATAGCC AAGCTGAATT GACACCATGG 
TTAGCCCCAA TTGTATGGGA GGGAACGTTT GATCCCAAAC TGATTGATTC AATCTACAAA 
AAACAGAACA TCACAGTAGC GACTACAGTC TTCGCTCTTG GCAAATACAC AGTGTTTCTT 
AAAGATTTCC TGGAGTCTGC AGAGCGCTAT TACTTTGTTG GGTTTCGTGT GCACTATTAT 
GTCTTCACCG ATCACCCAGA ACAGGTTCCT GTTGTGAAAC TGGGTGTAGA ACGTAAACTG 
ACGGTGATGA CAGTTAAAAG TTCTAACAGA TGGCAGGAGA TGACATTGCG GAGGATGGAG 
AGGGTGGAGA AACTGATTGA GAGCCGATTG GTGAAGGAAG CAGACTATGT TTTCAGCCTT 
GATGTGGATA CAAAGTTCTA CGGCCGCTGG GGAGCAGAGA CTTTGGGTGA TCTTATAGGT 
GTGATTCATC CTGGTTACTA TCATACACGA CGTGAGCAAT TCCCTTATGA GCGAAGGCCT 
GAGTCTCAAG CGTTTATCCC TTATTCTGAA GGTGATTATT ATTATTGTGG AGCTGTGCTT 
GGTGGTAAAG TGAAAGATGT ACATGAGGTT GCTAAAACCT GCCGAGAGCA GCTGGACATC 
GATGCAGCTA AATCCATTGA GGCAGCATGG CAGGAGGAGT CCCATTTGAA TAAGTATTTG 
CTGTATAACA AACCCAGTAA ACTGCTTTCA CCTGAGTACA TGTGGCAGGA CTTGGTACCG 
CAGGCAAATA GGGTCAAAAT CATTCGCTTC TCTCAAGTTA TTAAAAATTA TGCAGACGTT 
CGTCCAAACC CATAA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

CloneID ODa44207
Clone ID Related Accession (Same CDS sequence) XM_017356137.1
Accession Version XM_017356137.1 Latest version! Documents for ORF clone product in default vector
Sequence Information ORF Nucleotide Sequence (Length: 549bp)
Protein sequence
SNP
Vector pcDNA3.1+/C-(K)DYK or customized vector User Manual
Clone information Clone Map MSDS
Tag on pcDNA3.1+/C-(K)DYK C terminal DYKDDDDK tags
ORF Insert Method CloneEZ™ Seamless cloning technology
Insert Structure linear
Update Date 2016-06-23
Organism Danio rerio(Zebrafish)
Product uncharacterized protein LOC563897 isoform X1
Comment MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007116.6) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Danio rerio Annotation Release 105 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## 

1
61
121
181
241
301
361
421
481
541
ATGACAGTTA AAAGTTCTAA CAGATGGCAG GAGATGACAT TGCGGAGGAT GGAGAGGGTG 
GAGAAACTGA TTGAGAGCCG ATTGGTGAAG GAAGCAGACT ATGTTTTCAG CCTTGATGTG 
GATACAAAGT TCTACGGCCG CTGGGGAGCA GAGACTTTGG GTGATCTTAT AGGTGTGATT 
CATCCTGGTT ACTATCATAC ACGACGTGAG CAATTCCCTT ATGAGCGAAG GCCTGAGTCT 
CAAGCGTTTA TCCCTTATTC TGAAGGTGAT TATTATTATT GTGGAGCTGT GCTTGGTGGT 
AAAGTGAAAG ATGTACATGA GGTTGCTAAA ACCTGCCGAG AGCAGCTGGA CATCGATGCA 
GCTAAATCCA TTGAGGCAGC ATGGCAGGAG GAGTCCCATT TGAATAAGTA TTTGCTGTAT 
AACAAACCCA GTAAACTGCT TTCACCTGAG TACATGTGGC AGGACTTGGT ACCGCAGGCA 
AATAGGGTCA AAATCATTCG CTTCTCTCAA GTTATTAAAA ATTATGCAGA CGTTCGTCCA 
AACCCATAA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

RefSeq XP_017211626.1
CDS390..938
Translation

Target ORF information:

RefSeq Version XM_017356137.1
Organism Danio rerio(Zebrafish)
Definition Danio rerio ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) (abo), transcript variant X1, mRNA.

Target ORF information:

Epitope DYKDDDDK
Bacterial selection AMPR
Mammalian selection NeoR
Vector pcDNA3.1+/C-(K)DYK
 XM_017356137.1

ORF Insert Sequence:

1
61
121
181
241
301
361
421
481
541
ATGACAGTTA AAAGTTCTAA CAGATGGCAG GAGATGACAT TGCGGAGGAT GGAGAGGGTG 
GAGAAACTGA TTGAGAGCCG ATTGGTGAAG GAAGCAGACT ATGTTTTCAG CCTTGATGTG 
GATACAAAGT TCTACGGCCG CTGGGGAGCA GAGACTTTGG GTGATCTTAT AGGTGTGATT 
CATCCTGGTT ACTATCATAC ACGACGTGAG CAATTCCCTT ATGAGCGAAG GCCTGAGTCT 
CAAGCGTTTA TCCCTTATTC TGAAGGTGAT TATTATTATT GTGGAGCTGT GCTTGGTGGT 
AAAGTGAAAG ATGTACATGA GGTTGCTAAA ACCTGCCGAG AGCAGCTGGA CATCGATGCA 
GCTAAATCCA TTGAGGCAGC ATGGCAGGAG GAGTCCCATT TGAATAAGTA TTTGCTGTAT 
AACAAACCCA GTAAACTGCT TTCACCTGAG TACATGTGGC AGGACTTGGT ACCGCAGGCA 
AATAGGGTCA AAATCATTCG CTTCTCTCAA GTTATTAAAA ATTATGCAGA CGTTCGTCCA 
AACCCATAA

The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.

PubMed

book

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
BMC genomics17368(2016 05)
Pasquier J,Cabau C,Nguyen T,Jouanno E,Severac D,Braasch I,Journot L,Pontarotti P,Klopp C,Postlethwait JH,Guiguen Y,Bobe J