Syx13 cDNA ORF clone, Drosophila melanogaster(fruit fly)

Gene
Clones
gRNAs

Summary

Gene Symbol	Syx13
Entrez Gene ID	39485
Full Name	Syntaxin 13
Synonyms	CG11278,Dm Syx13,DmSyx13,Dmel\CG11278,SYN13,Syx,Syx20,ff16,ff16 (69D1-70A2),l(3)01470,syx13
General protein information	Preferred Names Syntaxin 13 Names CG11278 gene product from transcript CG11278-RA CG11278-PA CG11278-PB Syntaxin13 Syx13-PA Syx13-PB dSyntaxin13 syntaxin syntaxin 13
Gene Type	protein-coding
Organism	Drosophila melanogaster(fruit fly)
Genome	Chromosome: 3L Map Location: 69F6-69F6\|3-38.63 cM

mRNA and Protein(s)

mRNA	Protein	Name
NM_079330.3	NP_524054.1	syntaxin 13, isoform A
NM_001274865.1	NP_001261794.1	syntaxin 13, isoform B

Pathways from BioSystems

Homologies

Pan troglodytes (chimpanzee)	TSNARE1	XP_519987.4
Bos taurus (cattle)	TSNARE1	NP_001075915.1
Danio rerio (zebrafish)	LOC101882035	XP_005158362.1
Drosophila melanogaster (fruit fly)	Syx13	NP_524054.1
Homo sapiens (human)	TSNARE1	NP_659440.2
	TSNARE1	XP_001089591.2
Canis lupus familiaris (dog)	TSNARE1	XP_005628067.1
Xenopus tropicalis (tropical clawed frog)	tsnare1	NP_001106394.1
Gallus gallus (chicken)	TSNARE1	XP_418416.3
Anopheles gambiae (African malaria mosquito)	AgaP_AGAP011727	XP_320788.4

Gene Ontology
Bibliography

Related articles in PubMed

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
Matthews BB, Dos Santos G, Crosby MA, Emmert DB, St Pierre SE, Gramates LS, Zhou P, Schroeder AJ, Falls K, Strelets V, Russo SM, Gelbart WM,
G3 (Bethesda, Md.)5(8)1721-36(2015 Jun)

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
Crosby MA, Gramates LS, Dos Santos G, Matthews BB, St Pierre SE, Zhou P, Schroeder AJ, Falls K, Emmert DB, Russo SM, Gelbart WM,
G3 (Bethesda, Md.)5(8)1737-49(2015 Jun)

Sequence finishing and mapping of Drosophila melanogaster heterochromatin.
Hoskins RA, Carlson JW, Kennedy C, Acevedo D, Evans-Holm M, Frise E, Wan KH, Park S, Mendez-Lago M, Rossi F, Villasante A, Dimitri P, Karpen GH, Celniker SE
Science (New York, N.Y.)316(5831)1625-8(2007 Jun)

The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
Smith CD, Shu S, Mungall CJ, Karpen GH
Science (New York, N.Y.)316(5831)1586-91(2007 Jun)

Combined evidence annotation of transposable elements in genome sequences.
Quesneville H, Bergman CM, Andrieu O, Autard D, Nouaud D, Ashburner M, Anxolabehere D
PLoS computational biology1(2)166-75(2005 Jul)

GeneRIFs: Gene References Into Functions What's a GeneRIF?

Data show that syntaxin 13 (syx13) is a geneti modifier of the mutant CHMP2B (CHMP2BIntron5) eye phenotype.
Title: Syntaxin 13, a genetic modifier of mutant CHMP2B in frontotemporal dementia, is required for autophagosome maturation.

The following Syx13 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Syx13 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1⁺/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.

***CloneID	Accession No.	Definition	**Vector	*Turnaround time	Price (USD)	Select
OFa18390	NM_079330.3 Latest version!	Drosophila melanogaster syntaxin 13, transcript variant A (Syx13), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$174.30 $249.00
OFa18390	NM_001274865.1 Latest version!	Drosophila melanogaster syntaxin 13, transcript variant B (Syx13), mRNA.	pcDNA3.1-C-(k)DYK or customized vector	7-9	$174.30 $249.00

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** You may select a custom vector to replace pcDNA3.1+/C-(K)DYK after clone is added to cart.

** GenScript guarantees 100% sequence accuracy of all synthetic DNA constructs we deliver, but we do not guarantee protein expression in your experimental system. Protein expression is influenced by many factors that may vary between experiments or laboratories. In addition, please pay attention to the signal peptide, propeptide and transit peptide in target ORF, which may affect the choice of vector (N/C terminal tag vector).

***One clone ID might be correlated to multiple accession numbers, which share the same CDS sequence.

Reference Sequences (Refseq)

Syx13 ( NM_079330.3 ) cDNA ORF clone, Drosophila melanogaster(fruit fly) -> NP_524054.1 Drosophila melanogaster syntaxin 13, transcript variant A (Syx13), mRNA.

Price & Availability↑

CloneID	OFa18390
Clone ID Related Accession (Same CDS sequence)	NM_079330.3 , NM_001274865.1
Accession Version	NM_079330.3 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 855bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-04-24
Organism	Drosophila melanogaster(fruit fly)
Product	syntaxin 13, isoform A
Comment	Comment: REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_037436). On Jan 16, 2013 this sequence version replaced NM_079330.2. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.26 URL :: http://flybase.org ##Genome-Annotation-Data-END##

ATGTCCAAGG CCTTGAACAA TCCCGGTGGC AACGGAGGAG GCGGTGGCCC CCATCGGGAC 
TATGGTGCGA TGGCCGATTC AACGCCCGAA GTGAGCTTTG CGGCAGCCGG CGGTTCGTCC 
GGCTTCAGTC CGACGGAATT CATGTCTCTT AGTGAGGACA TTGGCCACAA CATCACTGCC 
ATCCACAGCA GCACCAAGCA GTTGGAGAAG CAGCTGAAAC TGATTGGCAC ATCCAAGGAG 
CAGCCAAATC TGCGGGAGAA GGTGCACACC ATCAACACCA AGTGCAATGC CCGGGTGCAG 
ACCACCAGTC AGGACTTGCA GAGGCTACAG GCCGTTGTGC GGCACGGAGA TCGCCAGCAG 
AAGCTGCAGC TGGAGAAGCT CACCCGGGAG TTCCATGGCG TGGTGGAGAA GTACTCCAAT 
CTGCAGCGAC GCATCTCATC GGCCATGCGG CAGACCCTGC AGCAGGCGCA GCAATTTGCC 
GATCAGGTGG TGGAGACCAA CGCCCGTGCT GAGCTGCTGC AGCAACAGCG CTTGGAGCAG 
GCCCATCTCC AGCAGGAGCA CGACATGCTC GACGATCGGC GGCGGCAGGT CGAGCAAATA 
GAGTCGGACA TCATCGATGT CAACCAGATC ATGACCCAGC TGAGTGGACT GGTGCACGAT 
CAGGGGCAGC AGATGGATTT CATCGAGAAC AGTATTGAGC AGACGGCCGC CAACGTTGAG 
GATGGCACCT CGGAACTGGC CAAGGCGGCC AGGAGTCGCC AGAGCTACCG GCGCAAGATC 
TTGATACTCC TGGTGATCGC TGTGATAATA GGTTTAATCG TAACTGGCGT TATCGTTGCC 
AAACTGAACA GTTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_524054.1
CDS	135..989
Translation	MSKALNNPGGNGGGGGPHRDYGAMADSTPEVSFAAAGGSSGFSPTEFMSLSEDIGHNITAIHSSTKQLEKQLKLIGTSKEQPNLREKVHTINTKCNARVQTTSQDLQRLQAVVRHGDRQQKLQLEKLTREFHGVVEKYSNLQRRISSAMRQTLQQAQQFADQVVETNARAELLQQQRLEQAHLQQEHDMLDDRRRQVEQIESDIIDVNQIMTQLSGLVHDQGQQMDFIENSIEQTAANVEDGTSELAKAARSRQSYRRKILILLVIAVIIGLIVTGVIVAKLNS

Target ORF information:

RefSeq Version	NM_079330.3
Organism	Drosophila melanogaster(fruit fly)
Definition	Drosophila melanogaster syntaxin 13, transcript variant A (Syx13), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_079330.3

ORF Insert Sequence:

ATGTCCAAGG CCTTGAACAA TCCCGGTGGC AACGGAGGAG GCGGTGGCCC CCATCGGGAC 
TATGGTGCGA TGGCCGATTC AACGCCCGAA GTGAGCTTTG CGGCAGCCGG CGGTTCGTCC 
GGCTTCAGTC CGACGGAATT CATGTCTCTT AGTGAGGACA TTGGCCACAA CATCACTGCC 
ATCCACAGCA GCACCAAGCA GTTGGAGAAG CAGCTGAAAC TGATTGGCAC ATCCAAGGAG 
CAGCCAAATC TGCGGGAGAA GGTGCACACC ATCAACACCA AGTGCAATGC CCGGGTGCAG 
ACCACCAGTC AGGACTTGCA GAGGCTACAG GCCGTTGTGC GGCACGGAGA TCGCCAGCAG 
AAGCTGCAGC TGGAGAAGCT CACCCGGGAG TTCCATGGCG TGGTGGAGAA GTACTCCAAT 
CTGCAGCGAC GCATCTCATC GGCCATGCGG CAGACCCTGC AGCAGGCGCA GCAATTTGCC 
GATCAGGTGG TGGAGACCAA CGCCCGTGCT GAGCTGCTGC AGCAACAGCG CTTGGAGCAG 
GCCCATCTCC AGCAGGAGCA CGACATGCTC GACGATCGGC GGCGGCAGGT CGAGCAAATA 
GAGTCGGACA TCATCGATGT CAACCAGATC ATGACCCAGC TGAGTGGACT GGTGCACGAT 
CAGGGGCAGC AGATGGATTT CATCGAGAAC AGTATTGAGC AGACGGCCGC CAACGTTGAG 
GATGGCACCT CGGAACTGGC CAAGGCGGCC AGGAGTCGCC AGAGCTACCG GCGCAAGATC 
TTGATACTCC TGGTGATCGC TGTGATAATA GGTTTAATCG TAACTGGCGT TATCGTTGCC 
AAACTGAACA GTTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

Syx13 ( NM_001274865.1 ) cDNA ORF clone, Drosophila melanogaster(fruit fly) -> NP_001261794.1 Drosophila melanogaster syntaxin 13, transcript variant B (Syx13), mRNA.

Price & Availability↑

CloneID	OFa18390
Clone ID Related Accession (Same CDS sequence)	NM_079330.3 , NM_001274865.1
Accession Version	NM_001274865.1 Latest version!	Documents for ORF clone product in default vector
Sequence Information	ORF Nucleotide Sequence (Length: 855bp) Protein sequence SNP
Vector	pcDNA3.1-C-(k)DYK or customized vector	User Manual
Clone information	Clone Map	MSDS
Tag on pcDNA3.1⁺/C-(K)DYK	C terminal DYKDDDDK tags
ORF Insert Method	CloneEZ™ Seamless cloning technology
Insert Structure	linear
Update Date	2019-04-24
Organism	Drosophila melanogaster(fruit fly)
Product	syntaxin 13, isoform B
Comment	Comment: REVIEWED REFSEQ: This record has been curated by FlyBase. This record is derived from an annotated genomic sequence (NT_037436). ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 6.26 URL :: http://flybase.org ##Genome-Annotation-Data-END##

ATGTCCAAGG CCTTGAACAA TCCCGGTGGC AACGGAGGAG GCGGTGGCCC CCATCGGGAC 
TATGGTGCGA TGGCCGATTC AACGCCCGAA GTGAGCTTTG CGGCAGCCGG CGGTTCGTCC 
GGCTTCAGTC CGACGGAATT CATGTCTCTT AGTGAGGACA TTGGCCACAA CATCACTGCC 
ATCCACAGCA GCACCAAGCA GTTGGAGAAG CAGCTGAAAC TGATTGGCAC ATCCAAGGAG 
CAGCCAAATC TGCGGGAGAA GGTGCACACC ATCAACACCA AGTGCAATGC CCGGGTGCAG 
ACCACCAGTC AGGACTTGCA GAGGCTACAG GCCGTTGTGC GGCACGGAGA TCGCCAGCAG 
AAGCTGCAGC TGGAGAAGCT CACCCGGGAG TTCCATGGCG TGGTGGAGAA GTACTCCAAT 
CTGCAGCGAC GCATCTCATC GGCCATGCGG CAGACCCTGC AGCAGGCGCA GCAATTTGCC 
GATCAGGTGG TGGAGACCAA CGCCCGTGCT GAGCTGCTGC AGCAACAGCG CTTGGAGCAG 
GCCCATCTCC AGCAGGAGCA CGACATGCTC GACGATCGGC GGCGGCAGGT CGAGCAAATA 
GAGTCGGACA TCATCGATGT CAACCAGATC ATGACCCAGC TGAGTGGACT GGTGCACGAT 
CAGGGGCAGC AGATGGATTT CATCGAGAAC AGTATTGAGC AGACGGCCGC CAACGTTGAG 
GATGGCACCT CGGAACTGGC CAAGGCGGCC AGGAGTCGCC AGAGCTACCG GCGCAAGATC 
TTGATACTCC TGGTGATCGC TGTGATAATA GGTTTAATCG TAACTGGCGT TATCGTTGCC 
AAACTGAACA GTTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

RefSeq	NP_001261794.1
CDS	215..1069
Translation	MSKALNNPGGNGGGGGPHRDYGAMADSTPEVSFAAAGGSSGFSPTEFMSLSEDIGHNITAIHSSTKQLEKQLKLIGTSKEQPNLREKVHTINTKCNARVQTTSQDLQRLQAVVRHGDRQQKLQLEKLTREFHGVVEKYSNLQRRISSAMRQTLQQAQQFADQVVETNARAELLQQQRLEQAHLQQEHDMLDDRRRQVEQIESDIIDVNQIMTQLSGLVHDQGQQMDFIENSIEQTAANVEDGTSELAKAARSRQSYRRKILILLVIAVIIGLIVTGVIVAKLNS

Target ORF information:

RefSeq Version	NM_001274865.1
Organism	Drosophila melanogaster(fruit fly)
Definition	Drosophila melanogaster syntaxin 13, transcript variant B (Syx13), mRNA.

Target ORF information:

Epitope	DYKDDDDK
Bacterial selection	AMP^R
Mammalian selection	Neo^R
Vector	pcDNA3.1⁺/C-(K)DYK

NM_001274865.1

ORF Insert Sequence:

ATGTCCAAGG CCTTGAACAA TCCCGGTGGC AACGGAGGAG GCGGTGGCCC CCATCGGGAC 
TATGGTGCGA TGGCCGATTC AACGCCCGAA GTGAGCTTTG CGGCAGCCGG CGGTTCGTCC 
GGCTTCAGTC CGACGGAATT CATGTCTCTT AGTGAGGACA TTGGCCACAA CATCACTGCC 
ATCCACAGCA GCACCAAGCA GTTGGAGAAG CAGCTGAAAC TGATTGGCAC ATCCAAGGAG 
CAGCCAAATC TGCGGGAGAA GGTGCACACC ATCAACACCA AGTGCAATGC CCGGGTGCAG 
ACCACCAGTC AGGACTTGCA GAGGCTACAG GCCGTTGTGC GGCACGGAGA TCGCCAGCAG 
AAGCTGCAGC TGGAGAAGCT CACCCGGGAG TTCCATGGCG TGGTGGAGAA GTACTCCAAT 
CTGCAGCGAC GCATCTCATC GGCCATGCGG CAGACCCTGC AGCAGGCGCA GCAATTTGCC 
GATCAGGTGG TGGAGACCAA CGCCCGTGCT GAGCTGCTGC AGCAACAGCG CTTGGAGCAG 
GCCCATCTCC AGCAGGAGCA CGACATGCTC GACGATCGGC GGCGGCAGGT CGAGCAAATA 
GAGTCGGACA TCATCGATGT CAACCAGATC ATGACCCAGC TGAGTGGACT GGTGCACGAT 
CAGGGGCAGC AGATGGATTT CATCGAGAAC AGTATTGAGC AGACGGCCGC CAACGTTGAG 
GATGGCACCT CGGAACTGGC CAAGGCGGCC AGGAGTCGCC AGAGCTACCG GCGCAAGATC 
TTGATACTCC TGGTGATCGC TGTGATAATA GGTTTAATCG TAACTGGCGT TATCGTTGCC 
AAACTGAACA GTTAA

The stop codons will be deleted if pcDNA3.1⁺/C-(K)DYK vector is selected.

PubMed

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.
G3 (Bethesda, Md.)5(8)1721-36(2015 Jun)
Matthews BB,Dos Santos G,Crosby MA,Emmert DB,St Pierre SE,Gramates LS,Zhou P,Schroeder AJ,Falls K,Strelets V,Russo SM,Gelbart WM,

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders.
G3 (Bethesda, Md.)5(8)1737-49(2015 Jun)
Crosby MA,Gramates LS,Dos Santos G,Matthews BB,St Pierre SE,Zhou P,Schroeder AJ,Falls K,Emmert DB,Russo SM,Gelbart WM,

Sequence finishing and mapping of Drosophila melanogaster heterochromatin.
Science (New York, N.Y.)316(5831)1625-8(2007 Jun)
Hoskins RA,Carlson JW,Kennedy C,Acevedo D,Evans-Holm M,Frise E,Wan KH,Park S,Mendez-Lago M,Rossi F,Villasante A,Dimitri P,Karpen GH,Celniker SE

The Release 5.1 annotation of Drosophila melanogaster heterochromatin.
Science (New York, N.Y.)316(5831)1586-91(2007 Jun)
Smith CD,Shu S,Mungall CJ,Karpen GH

Combined evidence annotation of transposable elements in genome sequences.
PLoS computational biology1(2)166-75(2005 Jul)
Quesneville H,Bergman CM,Andrieu O,Autard D,Nouaud D,Ashburner M,Anxolabehere D

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Syx13 cDNA ORF clone, Drosophila melanogaster(fruit fly)

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Related articles in PubMed

Target ORF information:

Target ORF information:

ORF Insert Sequence:

Target ORF information:

Target ORF information:

ORF Insert Sequence:

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