Gene Symbol | PYGO1 |
Entrez Gene ID | 26108 |
Full Name | pygopus family PHD finger 1 |
General protein information |
|
Gene Type | protein-coding |
Organism | Homo sapiens(human) |
Genome | |
Disorder MIM: |
ORF » Species Summary » Homo sapiens » PYGO1 cDNA ORF clone
Gene Symbol | PYGO1 |
Entrez Gene ID | 26108 |
Full Name | pygopus family PHD finger 1 |
General protein information |
|
Gene Type | protein-coding |
Organism | Homo sapiens(human) |
Genome | |
Disorder MIM: |
mRNA | Protein | Name |
---|---|---|
XM_011521446.2 | XP_011519748.1 | pygopus homolog 1 isoform X1 |
NM_001330326.2 | NP_001317255.1 | pygopus homolog 1 isoform 2 |
NM_015617.3 | NP_056432.1 | pygopus homolog 1 isoform 1 |
NM_015617.2 | NP_056432.1 | pygopus homolog 1 isoform 1 |
NM_001367806.1 | NP_001354735.1 | pygopus homolog 1 isoform 2 |
NM_001330326.1 | NP_001317255.1 | pygopus homolog 1 isoform 2 |
Danio rerio (zebrafish) | pygo1 | NP_001107109.1 |
Xenopus tropicalis (tropical clawed frog) | pygo1 | XP_002942500.2 |
PYGO1 | XP_001090005.2 | |
Canis lupus familiaris (dog) | PYGO1 | XP_005638747.1 |
Rattus norvegicus (Norway rat) | Pygo1 | NP_001178046.1 |
Homo sapiens (human) | PYGO1 | NP_056432.1 |
Bos taurus (cattle) | PYGO1 | XP_002690938.1 |
Pan troglodytes (chimpanzee) | PYGO1 | XP_523199.1 |
Mus musculus (house mouse) | Pygo1 | NP_082392.1 |
Gallus gallus (chicken) | PYGO1 | NP_001019862.1 |
Single nucleotide polymorphisms in Wnt signaling and cell death pathway genes and susceptibility to colorectal cancer.
Frank B, Hoffmeister M, Klopp N, Illig T, Chang-Claude J, Brenner H
Carcinogenesis31(8)1381-6(2010 Aug)
Decoding of methylated histone H3 tail by the Pygo-BCL9 Wnt signaling complex.
Fiedler M, S?nchez-Barrena MJ, Nekrasov M, Mieszczanek J, Rybin V, M?ller J, Evans P, Bienz M
Molecular cell30(4)507-18(2008 May)
Pygopus residues required for its binding to Legless are critical for transcription and development.
Townsley FM, Thompson B, Bienz M
The Journal of biological chemistry279(7)5177-83(2004 Feb)
A new nuclear component of the Wnt signalling pathway.
Thompson B, Townsley F, Rosin-Arbesfeld R, Musisi H, Bienz M
Nature cell biology4(5)367-73(2002 May)
Wnt/wingless signaling requires BCL9/legless-mediated recruitment of pygopus to the nuclear beta-catenin-TCF complex.
Kramps T, Peter O, Brunner E, Nellen D, Froesch B, Chatterjee S, Murone M, Z?llig S, Basler K
Cell109(1)47-60(2002 Apr)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
Observational study of gene-disease association. (HuGE Navigator)
Title: Single nucleotide polymorphisms in Wnt signaling and cell death pathway genes and susceptibility to colorectal cancer.
Data show that human and Drosophila Pygo PHD fingers associate with their cognate HD1 domains from BCL9/Legless to bind specifically to the histone H3 tail methylated at lysine 4 (H3K4me).
Title: Decoding of methylated histone H3 tail by the Pygo-BCL9 Wnt signaling complex.
The following PYGO1 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the PYGO1 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
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CloneID | OHu00380 | |
Clone ID Related Accession (Same CDS sequence) | NM_015617.3 , NM_015617.2 | |
Accession Version | NM_015617.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1260bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-06 | |
Organism | Homo sapiens(human) | |
Product | pygopus homolog 1 isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC012378.10, AF457207.1 and AC022083.6. On Dec 19, 2018 this sequence version replaced NM_015617.2. Transcript Variant: This variant (1) encodes isoform 1. Variants 1 and 2 encode isoforms that are the same length, but have distinct protein sequences. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: SRR1803614.48348.1, SRR1803613.219019.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1968189, SAMEA1968968 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGCCCGCCG AGAACTCTCC AGCTCCCGCT TACAAAGTTT CCTCGCATGG TGGTGATAGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_056432.1 |
CDS | 120..1379 |
Translation |
Target ORF information:
Target ORF information:
|
NM_015617.3 |
1 | ATGCCCGCCG AGAACTCTCC AGCTCCCGCT TACAAAGTTT CCTCGCATGG TGGTGATAGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu00380 | |
Clone ID Related Accession (Same CDS sequence) | NM_015617.3 , NM_015617.2 | |
Accession Version | NM_015617.2 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1260bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-10-02 | |
Organism | Homo sapiens(human) | |
Product | pygopus homolog 1 isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AF457207.1 and AC022083.6. On Dec 11, 2013 this sequence version replaced NM_015617.1. Transcript Variant: This variant (1) encodes isoform 1. Variants 1 and 2 encode isoforms that are the same length, but have distinct protein sequences. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: AF457207.1, SRR1803614.48348.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1968189, SAMEA1968968 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGCCCGCCG AGAACTCTCC AGCTCCCGCT TACAAAGTTT CCTCGCATGG TGGTGATAGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_056432.1 |
CDS | 1..1260 |
Translation |
Target ORF information:
Target ORF information:
|
NM_015617.2 |
1 | ATGCCCGCCG AGAACTCTCC AGCTCCCGCT TACAAAGTTT CCTCGCATGG TGGTGATAGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu48225 | |
Clone ID Related Accession (Same CDS sequence) | XM_011521446.2 , NM_001330326.2 , NM_001367806.1 , NM_001330326.1 | |
Accession Version | NM_001330326.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1260bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Homo sapiens(human) | |
Product | pygopus homolog 1 isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC012378.10 and AC022083.6. On Dec 19, 2018 this sequence version replaced NM_001330326.1. Transcript Variant: This variant (2) differs in the 5' and 3' UTRs, and uses an alternate start codon, compared to variant 1. The encoded isoform (2) is the same length as isoform 1, but has a distinct N-terminus. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: SRR1803612.26301.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1968968, SAMEA2144120 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGTCAGCAG AACAGGAGAA GGATCCCATT TCGCTGAAGA GAGTTCGAGG TGGTGATAGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001317255.1 |
CDS | 463..1722 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001330326.2 |
1 | ATGTCAGCAG AACAGGAGAA GGATCCCATT TCGCTGAAGA GAGTTCGAGG TGGTGATAGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu48225 | |
Clone ID Related Accession (Same CDS sequence) | XM_011521446.2 , NM_001330326.2 , NM_001367806.1 , NM_001330326.1 | |
Accession Version | NM_001367806.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1260bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Homo sapiens(human) | |
Product | pygopus homolog 1 isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC012378.10 and AC022083.6. On Dec 19, 2018 this sequence version replaced XM_011521446.3. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: SRR1803617.153189.1, SRR1803617.351206.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1968189, SAMEA1968540 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation, expression, longest protein ##RefSeq-Attributes-END## COMPLETENESS: complete on the 3' end. |
1 | ATGTCAGCAG AACAGGAGAA GGATCCCATT TCGCTGAAGA GAGTTCGAGG TGGTGATAGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001354735.1 |
CDS | 463..1722 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001367806.1 |
1 | ATGTCAGCAG AACAGGAGAA GGATCCCATT TCGCTGAAGA GAGTTCGAGG TGGTGATAGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu48225 | |
Clone ID Related Accession (Same CDS sequence) | XM_011521446.2 , NM_001330326.2 , NM_001367806.1 , NM_001330326.1 | |
Accession Version | NM_001330326.1 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1260bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2017-10-03 | |
Organism | Homo sapiens(human) | |
Product | pygopus homolog 1 isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC012378.10 and AC022083.6. On Aug 23, 2016 this sequence version replaced XM_005254300.4. Transcript Variant: This variant (2) differs in the 5' and 3' UTRs, and uses an alternate start codon, compared to variant 1. The encoded isoform (2) is the same length as isoform 1, but has a distinct N-terminus. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: SRR1803612.26301.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMEA1968968, SAMEA2144120 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGTCAGCAG AACAGGAGAA GGATCCCATT TCGCTGAAGA GAGTTCGAGG TGGTGATAGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001317255.1 |
CDS | 96..1355 |
Translation |
Target ORF information:
Target ORF information:
|
NM_001330326.1 |
1 | ATGTCAGCAG AACAGGAGAA GGATCCCATT TCGCTGAAGA GAGTTCGAGG TGGTGATAGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OHu48225 | |
Clone ID Related Accession (Same CDS sequence) | XM_011521446.2 , NM_001330326.2 , NM_001367806.1 , NM_001330326.1 | |
Accession Version | XM_011521446.2 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 1260bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | User Manual |
Clone information | Clone Map | MSDS |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-05 | |
Organism | Homo sapiens(human) | |
Product | pygopus homolog 1 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000015.10) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 6, 2016 this sequence version replaced XM_011521446.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Homo sapiens Annotation Release 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGTCAGCAG AACAGGAGAA GGATCCCATT TCGCTGAAGA GAGTTCGAGG TGGTGATAGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_011519748.1 |
CDS | 396..1655 |
Translation |
Target ORF information:
Target ORF information:
|
XM_011521446.2 |
1 | ATGTCAGCAG AACAGGAGAA GGATCCCATT TCGCTGAAGA GAGTTCGAGG TGGTGATAGT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Single nucleotide polymorphisms in Wnt signaling and cell death pathway genes and susceptibility to colorectal cancer. |
Decoding of methylated histone H3 tail by the Pygo-BCL9 Wnt signaling complex. |
Pygopus residues required for its binding to Legless are critical for transcription and development. |
A new nuclear component of the Wnt signalling pathway. |
Wnt/wingless signaling requires BCL9/legless-mediated recruitment of pygopus to the nuclear beta-catenin-TCF complex. |