Gene Symbol | Vma21 |
Entrez Gene ID | 67048 |
Full Name | VMA21 vacuolar H+-ATPase homolog (S. cerevisiae) |
Synonyms | 2610030H06Rik,AI840175 |
General protein information |
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Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
ORF » Species Summary » Mus musculus » Vma21 cDNA ORF clone
gRNAs
Gene Symbol | Vma21 |
Entrez Gene ID | 67048 |
Full Name | VMA21 vacuolar H+-ATPase homolog (S. cerevisiae) |
Synonyms | 2610030H06Rik,AI840175 |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
mRNA | Protein | Name |
---|---|---|
XM_006528261.3 | XP_006528324.1 | vacuolar ATPase assembly integral membrane protein Vma21 isoform X1 |
NM_001081356.3 | NP_001074825.1 | vacuolar ATPase assembly integral membrane protein Vma21 isoform 2 |
NM_001290780.1 | NP_001277709.1 | vacuolar ATPase assembly integral membrane protein Vma21 isoform 1 |
NM_001290781.1 | NP_001277710.1 | vacuolar ATPase assembly integral membrane protein Vma21 isoform 3 |
XM_006528261.4 | XP_006528324.1 | vacuolar ATPase assembly integral membrane protein Vma21 isoform X1 |
Rattus norvegicus (Norway rat) | Vma21 | XP_006253363.1 |
Gallus gallus (chicken) | VMA21 | NP_001026298.1 |
Rattus norvegicus (Norway rat) | LOC100912478 | XP_003751732.1 |
Danio rerio (zebrafish) | si:ch73-26o5.1 | NP_001189353.1 |
Xenopus tropicalis (tropical clawed frog) | vma21 | NP_001037928.1 |
Mus musculus (house mouse) | Vma21 | NP_001074825.1 |
LOC100428263 | XP_002803358.1 |
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.
Gaudet P, Livstone MS, Lewis SE, Thomas PD
Briefings in bioinformatics12(5)449-62(2011 Sep)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following Vma21 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Vma21 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMu16983 | |
Clone ID Related Accession (Same CDS sequence) | NM_001290780.1 | |
Accession Version | NM_001290780.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 405bp) Protein sequence SNP |
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Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-23 | |
Organism | Mus musculus(house mouse) | |
Product | vacuolar ATPase assembly integral membrane protein Vma21 isoform 1 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AL807394.10. On Mar 20, 2014 this sequence version replaced XM_006528262.1. Transcript Variant: This variant (1) encodes the longest isoform (1). Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: BY725771.1, BE291449.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849375, SAMN00849377 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGCGCTGCA GCCTCCAGAG TTCAGGTATC CCTGAGTTCC GCTGGGCAAC GGTGGCCGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001277709.1 |
CDS | 159..563 |
Translation |
Target ORF information:
Target ORF information:
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1 | ATGCGCTGCA GCCTCCAGAG TTCAGGTATC CCTGAGTTCC GCTGGGCAAC GGTGGCCGCT |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu17363 | |
Clone ID Related Accession (Same CDS sequence) | NM_001290781.1 | |
Accession Version | NM_001290781.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 363bp) Protein sequence SNP |
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Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-23 | |
Organism | Mus musculus(house mouse) | |
Product | vacuolar ATPase assembly integral membrane protein Vma21 isoform 3 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CJ137757.1, AA015086.1, AK164163.1, CX564875.1, AL807394.10 and BG143407.1. On Mar 20, 2014 this sequence version replaced XM_006528263.1. Transcript Variant: This variant (3) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (3) has a distinct N-terminus and is shorter than isoform 1. ##Evidence-Data-START## Transcript exon combination :: AA015086.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGCTGCGCG GAAAGTCCCG GCTCAACGTG GAGTGGCTAG GCTACTCGCC CGGCCTGCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001277710.1 |
CDS | 375..737 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGCTGCGCG GAAAGTCCCG GCTCAACGTG GAGTGGCTAG GCTACTCGCC CGGCCTGCTC |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu56364 | |
Clone ID Related Accession (Same CDS sequence) | XM_006528261.3 , XM_006528261.4 | |
Accession Version | XM_006528261.3 | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 486bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2016-06-21 | |
Organism | Mus musculus(house mouse) | |
Product | vacuolar ATPase assembly integral membrane protein Vma21 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000086.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jun 22, 2016 this sequence version replaced XM_006528261.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Mus musculus Annotation Release 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCACCGC AGCCGACAGC TGGGTCGTCC TTTCCGCGGC TCCTCTACCT CGGGTCACCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006528324.1 |
CDS | 193..678 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGCACCGC AGCCGACAGC TGGGTCGTCC TTTCCGCGGC TCCTCTACCT CGGGTCACCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu16772 | |
Clone ID Related Accession (Same CDS sequence) | NM_001081356.3 | |
Accession Version | NM_001081356.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 306bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-23 | |
Organism | Mus musculus(house mouse) | |
Product | vacuolar ATPase assembly integral membrane protein Vma21 isoform 2 | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CJ071023.1, AK164163.1, CX564875.1, AL807394.10 and BG143407.1. On Mar 21, 2014 this sequence version replaced NM_001081356.2. Transcript Variant: This variant (2) uses an alternate splice site in the 5' coding region and initiates translation at an alternate upstream start codon, compared to variant 1. The encoded isoform (2) has a distinct N-terminus and is shorter than isoform 1. ##Evidence-Data-START## Transcript exon combination :: CJ071023.1, AK164163.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGAGCGTC TTGATAAAGC AGCGCTCAAT GCGCTGCAGC CTCCAGAGTT CAGAAATGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001074825.1 |
CDS | 131..436 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGAGCGTC TTGATAAAGC AGCGCTCAAT GCGCTGCAGC CTCCAGAGTT CAGAAATGAA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu56364 | |
Clone ID Related Accession (Same CDS sequence) | XM_006528261.3 , XM_006528261.4 | |
Accession Version | XM_006528261.4 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 486bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | vacuolar ATPase assembly integral membrane protein Vma21 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000086.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 8, 2019 this sequence version replaced XM_006528261.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGCACCGC AGCCGACAGC TGGGTCGTCC TTTCCGCGGC TCCTCTACCT CGGGTCACCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_006528324.1 |
CDS | 194..679 |
Translation |
Target ORF information:
Target ORF information:
|
![]() |
1 | ATGGCACCGC AGCCGACAGC TGGGTCGTCC TTTCCGCGGC TCCTCTACCT CGGGTCACCA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. |