Gene Symbol | Tmem53 |
Entrez Gene ID | 68777 |
Full Name | transmembrane protein 53 |
Synonyms | 1110038M16Rik,1500001P22Rik,1700012A05Rik |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
ORF » Species Summary » Mus musculus » Tmem53 cDNA ORF clone
gRNAs
Gene Symbol | Tmem53 |
Entrez Gene ID | 68777 |
Full Name | transmembrane protein 53 |
Synonyms | 1110038M16Rik,1500001P22Rik,1700012A05Rik |
General protein information |
|
Gene Type | protein-coding |
Organism | Mus musculus(house mouse) |
Genome |
mRNA | Protein | Name |
---|---|---|
NM_001285815.1 | NP_001272744.1 | transmembrane protein 53 isoform d |
NM_029589.1 | NP_083865.1 | transmembrane protein 53 isoform c |
NM_001285812.1 | NP_001272741.1 | transmembrane protein 53 isoform a |
NM_026837.3 | NP_081113.1 | transmembrane protein 53 isoform b |
XM_030253755.1 | XP_030109615.1 | transmembrane protein 53 isoform X1 |
NM_001285814.1 | NP_001272743.1 | transmembrane protein 53 isoform c |
NM_001285816.1 | NP_001272745.1 | transmembrane protein 53 isoform d |
TMEM53 | XP_002801564.1 | |
Bos taurus (cattle) | TMEM53 | NP_001033661.1 |
Mus musculus (house mouse) | Tmem53 | NP_001272741.1 |
Rattus norvegicus (Norway rat) | Tmem53 | NP_001101434.1 |
Danio rerio (zebrafish) | tmem53 | NP_001002637.1 |
Oryza sativa (rice) | Os06g0730300 | NP_001058655.1 |
Xenopus tropicalis (tropical clawed frog) | tmem53 | NP_001107322.1 |
Caenorhabditis elegans (roundworm) | C09B8.4 | NP_509006.2 |
Pan troglodytes (chimpanzee) | TMEM53 | XP_513099.3 |
Gallus gallus (chicken) | TMEM53 | NP_001264509.1 |
Homo sapiens (human) | TMEM53 | NP_078863.2 |
Caenorhabditis elegans (roundworm) | T10B11.6 | NP_491980.1 |
Caenorhabditis elegans (roundworm) | T24H10.4 | NP_495945.2 |
Arabidopsis thaliana (thale cress) | AT3G19970 | NP_566652.1 |
Canis lupus familiaris (dog) | TMEM53 | XP_005629146.1 |
Drosophila melanogaster (fruit fly) | CG8245 | NP_610178.2 |
Anopheles gambiae (African malaria mosquito) | AgaP_AGAP009586 | XP_318608.3 |
Tissue expression patterns identify mouse cilia genes.
McClintock TS, Glasser CE, Bose SC, Bergman DA
Physiological genomics32(2)198-206(2008 Jan)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
Tmem53 is most abundantly expressed in tissues rich in highly ciliated cells, such as olfactory sensory neurons, and is predicted to be important to cilia.
Title: Tissue expression patterns identify mouse cilia genes.
The following Tmem53 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the Tmem53 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID | OMu17312 | |
Clone ID Related Accession (Same CDS sequence) | NM_001285812.1 | |
Accession Version | NM_001285812.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 852bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-23 | |
Organism | Mus musculus(house mouse) | |
Product | transmembrane protein 53 isoform a | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AL671866.8, AK004164.1, AW049729.1 and AL844169.6. Transcript Variant: This variant (1) encodes the longest isoform (a). Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: BC020121.1, BF164608.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGCCTCGG CCGAGCTGGA TTACAGCATC GAGATCCCGG ATCAGCCCTG CTGGAGCCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001272741.1 |
CDS | 124..975 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGCCTCGG CCGAGCTGGA TTACAGCATC GAGATCCCGG ATCAGCCCTG CTGGAGCCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu17356 | |
Clone ID Related Accession (Same CDS sequence) | NM_029589.1 , NM_001285814.1 | |
Accession Version | NM_029589.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 786bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-23 | |
Organism | Mus musculus(house mouse) | |
Product | transmembrane protein 53 isoform c | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK005885.1, AK005104.1 and AL844169.6. Transcript Variant: This variant (3) includes alternate 5' exon structure and it thus differs in its 5' UTR and 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (c) has a distinct and shorter N-terminus, compared to isoform a. Both variants 3 and 4 encode isoform c. ##Evidence-Data-START## Transcript exon combination :: AK005885.1, BY706028.1 [ECO:0000332] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGAATCCTG ATGGAAAGAA CAGACAAGGT GGGAAGGAAG CTGGGAAGCA ACAGCCTGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_083865.1 |
CDS | 91..876 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGAATCCTG ATGGAAAGAA CAGACAAGGT GGGAAGGAAG CTGGGAAGCA ACAGCCTGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu17356 | |
Clone ID Related Accession (Same CDS sequence) | NM_029589.1 , NM_001285814.1 | |
Accession Version | NM_001285814.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 786bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-23 | |
Organism | Mus musculus(house mouse) | |
Product | transmembrane protein 53 isoform c | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AL671866.8, AK004164.1, AW049729.1 and AL844169.6. Transcript Variant: This variant (4) differs in its 5' UTR and 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (c) has a distinct and shorter N-terminus, compared to isoform a. Both variants 3 and 4 encode isoform c. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: BQ928065.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849384, SAMN00849385 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGAATCCTG ATGGAAAGAA CAGACAAGGT GGGAAGGAAG CTGGGAAGCA ACAGCCTGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001272743.1 |
CDS | 255..1040 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGAATCCTG ATGGAAAGAA CAGACAAGGT GGGAAGGAAG CTGGGAAGCA ACAGCCTGTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu03137 | |
Clone ID Related Accession (Same CDS sequence) | NM_026837.3 | |
Accession Version | NM_026837.3 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 831bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-23 | |
Organism | Mus musculus(house mouse) | |
Product | transmembrane protein 53 isoform b | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AL671866.8, AK004164.1, AW049729.1 and AL844169.6. On Oct 23, 2013 this sequence version replaced NM_026837.2. Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region, compared to variant 1, resulting in an isoform (b) that is shorter than isoform a. ##Evidence-Data-START## Transcript exon combination :: BI248980.1, BY704409.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGCCTCGG CCGAGCTGGA TTACAGCATC GAGATCCCGG ATCAGCCCTG CTGGAGCCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_081113.1 |
CDS | 124..954 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGCCTCGG CCGAGCTGGA TTACAGCATC GAGATCCCGG ATCAGCCCTG CTGGAGCCAG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu08888 | |
Clone ID Related Accession (Same CDS sequence) | NM_001285815.1 , XM_030253755.1 , NM_001285816.1 | |
Accession Version | NM_001285815.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 618bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-23 | |
Organism | Mus musculus(house mouse) | |
Product | transmembrane protein 53 isoform d | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AL671866.8, BE647557.1, AK004164.1, AW049729.1 and AL844169.6. Transcript Variant: This variant (5) differs in its 5' UTR and initiates translation at a downstream in-frame start codon, compared to variant 1. The encoded isoform (d) is shorter at the N-terminus, compared to isoform a. Both variants 5 and 6 encode isoform d. ##Evidence-Data-START## CDS exon combination :: BI248980.1, AI429067.1 [ECO:0000331] RNAseq introns :: mixed/partial sample support SAMN00849386 [ECO:0000350] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGTCTTCT TCTCTGAGTC CTTGGGCATC CCTTCACTTC GCGTGATAGC CCAGAAACTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001272744.1 |
CDS | 441..1058 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGTCTTCT TCTCTGAGTC CTTGGGCATC CCTTCACTTC GCGTGATAGC CCAGAAACTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu08888 | |
Clone ID Related Accession (Same CDS sequence) | NM_001285815.1 , XM_030253755.1 , NM_001285816.1 | |
Accession Version | NM_001285816.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 618bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-02-23 | |
Organism | Mus musculus(house mouse) | |
Product | transmembrane protein 53 isoform d | |
Comment | Comment: VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AL671866.8, AK004164.1, AW049729.1 and AL844169.6. Transcript Variant: This variant (6) lacks a portion of the 5' coding region and initiates translation at a downstream in-frame start codon, compared to variant 1. The encoded isoform (d) is shorter at the N-terminus, compared to isoform a. Both variants 5 and 6 encode isoform d. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: BF123463.1, AA869708.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. |
1 | ATGGTCTTCT TCTCTGAGTC CTTGGGCATC CCTTCACTTC GCGTGATAGC CCAGAAACTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | NP_001272745.1 |
CDS | 221..838 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGTCTTCT TCTCTGAGTC CTTGGGCATC CCTTCACTTC GCGTGATAGC CCAGAAACTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID | OMu08888 | |
Clone ID Related Accession (Same CDS sequence) | NM_001285815.1 , XM_030253755.1 , NM_001285816.1 | |
Accession Version | XM_030253755.1 Latest version! | Documents for ORF clone product in default vector |
Sequence Information | ORF Nucleotide Sequence (Length: 618bp) Protein sequence SNP |
|
Vector | pcDNA3.1-C-(k)DYK or customized vector | ![]() |
Clone information | Clone Map | ![]() |
Tag on pcDNA3.1+/C-(K)DYK | C terminal DYKDDDDK tags | |
ORF Insert Method | CloneEZ™ Seamless cloning technology | |
Insert Structure | linear | |
Update Date | 2019-08-07 | |
Organism | Mus musculus(house mouse) | |
Product | transmembrane protein 53 isoform X1 | |
Comment | Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000070.6) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mus musculus Annotation Release 108 Annotation Version :: 108 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## |
1 | ATGGTCTTCT TCTCTGAGTC CTTGGGCATC CCTTCACTTC GCGTGATAGC CCAGAAACTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq | XP_030109615.1 |
CDS | 355..972 |
Translation |
Target ORF information:
Target ORF information:
|
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1 | ATGGTCTTCT TCTCTGAGTC CTTGGGCATC CCTTCACTTC GCGTGATAGC CCAGAAACTG |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
Tissue expression patterns identify mouse cilia genes. |