Gene Symbol |
TMEM53 |
Entrez Gene ID |
540738 |
Full Name |
transmembrane protein 53 |
General protein information |
- Preferred Names
transmembrane protein 53
Names
transmembrane protein 53
|
Gene Type |
protein-coding |
Organism |
Bos taurus(cattle) |
|
TMEM53 |
XP_002801564.1 |
Bos taurus (cattle) |
TMEM53 |
NP_001033661.1 |
Mus musculus (house mouse) |
Tmem53 |
NP_001272741.1 |
Rattus norvegicus (Norway rat) |
Tmem53 |
NP_001101434.1 |
Danio rerio (zebrafish) |
tmem53 |
NP_001002637.1 |
Oryza sativa (rice) |
Os06g0730300 |
NP_001058655.1 |
Xenopus tropicalis (tropical clawed frog) |
tmem53 |
NP_001107322.1 |
Caenorhabditis elegans (roundworm) |
C09B8.4 |
NP_509006.2 |
Pan troglodytes (chimpanzee) |
TMEM53 |
XP_513099.3 |
Gallus gallus (chicken) |
TMEM53 |
NP_001264509.1 |
Homo sapiens (human) |
TMEM53 |
NP_078863.2 |
Caenorhabditis elegans (roundworm) |
T10B11.6 |
NP_491980.1 |
Caenorhabditis elegans (roundworm) |
T24H10.4 |
NP_495945.2 |
Arabidopsis thaliana (thale cress) |
AT3G19970 |
NP_566652.1 |
Canis lupus familiaris (dog) |
TMEM53 |
XP_005629146.1 |
Drosophila melanogaster (fruit fly) |
CG8245 |
NP_610178.2 |
Anopheles gambiae (African malaria mosquito) |
AgaP_AGAP009586 |
XP_318608.3 |
Related articles in PubMed
A whole-genome assembly of the domestic cow, Bos taurus.
Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Mar?ais G, Roberts M, Subramanian P, Yorke JA, Salzberg SL
Genome biology10(4)R42(2009)
GeneRIFs: Gene References Into Functions What's a GeneRIF?
The following TMEM53 gene cDNA ORF clone sequences were retrieved from the NCBI Reference Sequence Database (RefSeq). These sequences represent the protein coding region of the TMEM53 cDNA ORF which is encoded by the open reading frame (ORF) sequence. ORF sequences can be delivered in our standard vector, pcDNA3.1+/C-(K)DYK or the vector of your choice as an expression/transfection-ready ORF clone. Not the clone you want? Click here to find your clone.
CloneID |
OBa42800 |
Clone ID Related Accession (Same CDS sequence) |
NM_001038572.1
|
Accession Version |
NM_001038572.1 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 885bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2019-10-19 |
Organism |
Bos taurus(cattle) |
Product |
transmembrane protein 53 |
Comment |
Comment: PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC109854.1. On Jan 6, 2006 this sequence version replaced XM_612890.2.
##Evidence-Data-START##
Transcript exon combination :: BC109854.1, EV670745.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns SAMN03145413, SAMN03145414 [ECO:0000348]
##Evidence-Data-END##
|
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841
| ATGGCTTCAG CCCAGCTGGA CTACACCATC GAGATCCCTG ATCAGCCCTG CCGGAGTCAG GAGAACAGCC CTGACCAAGG TGGGAAGGAG GCTGGGACTC GACTGCCTTT GGTGATTCTC TTGGGCTGGG GAGGCTGCTC TGACAAGAAC CTGGCCAAGT ACAGTGCCAT CTATCACAAA AGGGGCTGCA TCGTCATCCG ATACACAGCC CCCTGGCACA TGGTCTTCTT CTCCGAGACC CTGGGCATCC CTTCACTTCG TGTCTTGGCC CAGAAGCTGC TTGAGCTGCT CTTTGATTAC GAGGTTGAGA AGGAGCCCCT GCTCTTCCAC GTCTTCAGCA ACGCTGGCGT CATGCTGTAC CGATATGTGC TGGAGCTCCT GCAGACCCAC CAGCGCTTCT GTCACCTGCG TGTGGTGGGC ACCATCTTTG ACAGCGGTCC TGGTGACAGC AACCTGCTGG GGGCTCTGCG GGCACTGGCA GTCGTCCTAG AGCACCGTCC TGCCGCGCTG CGCCTGCTGC TCCTGGTGGC CTTCACCCTG GTGGCCTTCC TGTTCCACGT CCTGCTCGCG CCACTCACTG CCCTCTTCCA CACGCACTTC TATGACAGGC TGCTCGACGC AGCCTCTCGC TGGCCCGAGC TCTACCTCTA CTCCAGGGCC GACGAGGTGG TCCTGGCCCG GGATGTGGAG CGCATGGTGG AGGCACGCCT GGCACACCAG GTCCTGGTAC GCTCCGTGGA CTTCGTGTCG TCTGCACACG TCAGCCACCT CCGCGACTAC CCTACTTATT ACACTACCCT CTGCATCAAC TTCATGCACA GCTGTGTCCA CTGCTCAGGT CCTTGCCCTC CCCACCTCAC TTCTGCTCCA GAAATAAATG CCTGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
NP_001033661.1 |
CDS | 43..927 |
Translation | |
Target ORF information:
RefSeq Version | NM_001038572.1 |
Organism | Bos taurus(cattle) |
Definition | Bos taurus transmembrane protein 53 (TMEM53), mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
NM_001038572.1 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841
| ATGGCTTCAG CCCAGCTGGA CTACACCATC GAGATCCCTG ATCAGCCCTG CCGGAGTCAG GAGAACAGCC CTGACCAAGG TGGGAAGGAG GCTGGGACTC GACTGCCTTT GGTGATTCTC TTGGGCTGGG GAGGCTGCTC TGACAAGAAC CTGGCCAAGT ACAGTGCCAT CTATCACAAA AGGGGCTGCA TCGTCATCCG ATACACAGCC CCCTGGCACA TGGTCTTCTT CTCCGAGACC CTGGGCATCC CTTCACTTCG TGTCTTGGCC CAGAAGCTGC TTGAGCTGCT CTTTGATTAC GAGGTTGAGA AGGAGCCCCT GCTCTTCCAC GTCTTCAGCA ACGCTGGCGT CATGCTGTAC CGATATGTGC TGGAGCTCCT GCAGACCCAC CAGCGCTTCT GTCACCTGCG TGTGGTGGGC ACCATCTTTG ACAGCGGTCC TGGTGACAGC AACCTGCTGG GGGCTCTGCG GGCACTGGCA GTCGTCCTAG AGCACCGTCC TGCCGCGCTG CGCCTGCTGC TCCTGGTGGC CTTCACCCTG GTGGCCTTCC TGTTCCACGT CCTGCTCGCG CCACTCACTG CCCTCTTCCA CACGCACTTC TATGACAGGC TGCTCGACGC AGCCTCTCGC TGGCCCGAGC TCTACCTCTA CTCCAGGGCC GACGAGGTGG TCCTGGCCCG GGATGTGGAG CGCATGGTGG AGGCACGCCT GGCACACCAG GTCCTGGTAC GCTCCGTGGA CTTCGTGTCG TCTGCACACG TCAGCCACCT CCGCGACTAC CCTACTTATT ACACTACCCT CTGCATCAAC TTCATGCACA GCTGTGTCCA CTGCTCAGGT CCTTGCCCTC CCCACCTCAC TTCTGCTCCA GAAATAAATG CCTGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
CloneID |
OBa232947 |
Clone ID Related Accession (Same CDS sequence) |
XM_024989647.1
|
Accession Version |
XM_024989647.1 Latest version! |
Documents for ORF clone product in default vector |
Sequence Information |
ORF Nucleotide Sequence (Length: 915bp)
Protein sequence
SNP |
Vector |
pcDNA3.1+/C-(K)DYK or customized vector |
User Manual |
Clone information |
Clone Map |
MSDS |
Tag on pcDNA3.1+/C-(K)DYK |
C terminal DYKDDDDK tags |
ORF Insert Method |
CloneEZ™ Seamless cloning technology |
Insert Structure |
linear |
Update Date |
2018-05-06 |
Organism |
Bos taurus(cattle) |
Product |
transmembrane protein 53 isoform X1 |
Comment |
Comment: MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_037330.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Bos taurus Annotation Release 106
Annotation Version :: 106
Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
Annotation Software Version :: 8.0
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
|
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901
| ATGGCTTCAG CCCAGCTGGA CTACACCATC GAGATCCCTG ATCAGCCCTG CCGGAGTCAG GGTATGGAAC GAGGGTTGGG TCCAGTCGTG GAGAACAGCC CTGACCAAGG TGGGAAGGAG GCTGGGACTC GACTGCCTTT GGTGATTCTC TTGGGCTGGG GAGGCTGCTC TGACAAGAAC CTGGCCAAGT ACAGTGCCAT CTATCACAAA AGGGGCTGCA TCGTCATCCG ATACACAGCC CCCTGGCACA TGGTCTTCTT CTCCGAGACC CTGGGCATCC CTTCACTTCG TGTCTTGGCC CAGAAGCTGC TTGAGCTGCT CTTTGATTAC GAGGTTGAGA AGGAGCCCCT GCTCTTCCAC GTCTTCAGCA ACGCTGGCGT CATGCTGTAC CGATATGTGC TGGAGCTCCT GCAGACCCAC CAGCGCTTCT GTCACCTGCG TGTGGTGGGC ACCATCTTTG ACAGCGGTCC TGGTGACAGC AACCTGCTGG GGGCTCTGCG GGCACTGGCA GTCGTCCTAG AGCACCGTCC TGCCGCGCTG CGCCTGCTGC TCCTGGTGGC CTTCACCCTG GTGGCCTTCC TGTTCCACGT CCTGCTCGCG CCACTCACTG CCCTCTTCCA CACGCACTTC TATGACAGGC TGCTCGACGC AGCCTCTCGC TGGCCCGAGC TCTACCTCTA CTCCAGGGCC GACGAGGTGG TCCTGGCCCG GGATGTGGAG CGCATGGTGG AGGCACGCCT GGCACACCAG GTCCTGGTAC GCTCCGTGGA CTTCGTGTCG TCTGCACACG TCAGCCACCT CCGCGACTAC CCTACTTATT ACACTACCCT CTGCATCAAC TTCATGCACA GCTGTGTCCA CTGCTCAGGT CCTTGCCCTC CCCACCTCAC TTCTGCTCCA GAAATAAATG CCTGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
RefSeq |
XP_024845415.1 |
CDS | 101..1015 |
Translation | |
Target ORF information:
RefSeq Version | XM_024989647.1 |
Organism | Bos taurus(cattle) |
Definition | Bos taurus transmembrane protein 53 (TMEM53), transcript variant X1, mRNA. |
Target ORF information:
Epitope | DYKDDDDK |
Bacterial selection | AMPR |
Mammalian selection | NeoR |
Vector | pcDNA3.1+/C-(K)DYK |
|
XM_024989647.1 |
ORF Insert Sequence:
1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901
| ATGGCTTCAG CCCAGCTGGA CTACACCATC GAGATCCCTG ATCAGCCCTG CCGGAGTCAG GGTATGGAAC GAGGGTTGGG TCCAGTCGTG GAGAACAGCC CTGACCAAGG TGGGAAGGAG GCTGGGACTC GACTGCCTTT GGTGATTCTC TTGGGCTGGG GAGGCTGCTC TGACAAGAAC CTGGCCAAGT ACAGTGCCAT CTATCACAAA AGGGGCTGCA TCGTCATCCG ATACACAGCC CCCTGGCACA TGGTCTTCTT CTCCGAGACC CTGGGCATCC CTTCACTTCG TGTCTTGGCC CAGAAGCTGC TTGAGCTGCT CTTTGATTAC GAGGTTGAGA AGGAGCCCCT GCTCTTCCAC GTCTTCAGCA ACGCTGGCGT CATGCTGTAC CGATATGTGC TGGAGCTCCT GCAGACCCAC CAGCGCTTCT GTCACCTGCG TGTGGTGGGC ACCATCTTTG ACAGCGGTCC TGGTGACAGC AACCTGCTGG GGGCTCTGCG GGCACTGGCA GTCGTCCTAG AGCACCGTCC TGCCGCGCTG CGCCTGCTGC TCCTGGTGGC CTTCACCCTG GTGGCCTTCC TGTTCCACGT CCTGCTCGCG CCACTCACTG CCCTCTTCCA CACGCACTTC TATGACAGGC TGCTCGACGC AGCCTCTCGC TGGCCCGAGC TCTACCTCTA CTCCAGGGCC GACGAGGTGG TCCTGGCCCG GGATGTGGAG CGCATGGTGG AGGCACGCCT GGCACACCAG GTCCTGGTAC GCTCCGTGGA CTTCGTGTCG TCTGCACACG TCAGCCACCT CCGCGACTAC CCTACTTATT ACACTACCCT CTGCATCAAC TTCATGCACA GCTGTGTCCA CTGCTCAGGT CCTTGCCCTC CCCACCTCAC TTCTGCTCCA GAAATAAATG CCTGA |
The stop codons will be deleted if pcDNA3.1+/C-(K)DYK vector is selected.
 |
A whole-genome assembly of the domestic cow, Bos taurus.
Genome biology10(4)R42(2009)
Zimin AV,Delcher AL,Florea L,Kelley DR,Schatz MC,Puiu D,Hanrahan F,Pertea G,Van Tassell CP,Sonstegard TS,Mar?ais G,Roberts M,Subramanian P,Yorke JA,Salzberg SL |